HEADER ISOMERASE 22-APR-06 2DML TITLE THE SOLUTION STRUCTURE OF THE FIRST THIOREDOXIN DOMAIN OF MOUSE TITLE 2 PROTEIN DISULFIDE-ISOMERASE A6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 1ST THIOREDOXIN DOMAIN; COMPND 5 SYNONYM: THIOREDOXIN DOMAIN-CONTAINING PROTEIN 7; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PDIA6; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050509-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS THIOREDOXIN DOMAIN-CONTAINING PROTEIN 7, ENDOPLASMIC RETICULUM, KEYWDS 2 ISOMERASE, REDOX-ACTIVE CENTER, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 3 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DML 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DML 1 VERSN REVDAT 1 22-OCT-06 2DML 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE FIRST THIOREDOXIN DOMAIN OF JRNL TITL 2 MOUSE PROTEIN DISULFIDE-ISOMERASE A6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DML COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025592. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM THIOREDOXIN DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS HCL; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 17 -175.24 -59.95 REMARK 500 1 GLU A 21 95.61 -66.61 REMARK 500 1 PRO A 24 18.31 -69.79 REMARK 500 1 PHE A 27 -36.02 -34.68 REMARK 500 1 VAL A 31 -64.28 -100.66 REMARK 500 1 PRO A 45 4.00 -69.75 REMARK 500 1 LYS A 69 99.54 -59.03 REMARK 500 1 HIS A 78 44.59 -80.15 REMARK 500 1 ARG A 110 32.87 -94.02 REMARK 500 1 SER A 128 100.45 -48.01 REMARK 500 2 ASP A 17 -175.27 -57.10 REMARK 500 2 GLU A 21 98.19 -66.73 REMARK 500 2 PRO A 24 18.44 -69.70 REMARK 500 2 PHE A 27 -29.34 -39.28 REMARK 500 2 VAL A 31 -64.36 -99.77 REMARK 500 2 GLN A 33 30.00 -98.00 REMARK 500 2 PRO A 45 4.44 -69.74 REMARK 500 2 HIS A 78 41.72 -82.89 REMARK 500 2 ARG A 110 45.19 -84.91 REMARK 500 3 ALA A 8 164.54 -47.23 REMARK 500 3 VAL A 9 -40.04 -133.78 REMARK 500 3 SER A 15 -38.60 -35.98 REMARK 500 3 ASP A 17 171.33 -47.90 REMARK 500 3 GLU A 21 97.00 -66.73 REMARK 500 3 PRO A 24 17.97 -69.70 REMARK 500 3 PHE A 27 -29.51 -36.72 REMARK 500 3 VAL A 31 -64.48 -101.73 REMARK 500 3 GLN A 33 30.18 -99.03 REMARK 500 3 PRO A 45 3.67 -69.76 REMARK 500 3 LYS A 69 98.21 -57.06 REMARK 500 3 HIS A 78 40.60 -81.53 REMARK 500 3 ARG A 110 49.33 -82.86 REMARK 500 4 SER A 3 41.99 -91.22 REMARK 500 4 SER A 6 42.99 35.61 REMARK 500 4 GLU A 21 95.22 -67.35 REMARK 500 4 PRO A 24 18.29 -69.68 REMARK 500 4 PHE A 27 -30.72 -36.77 REMARK 500 4 VAL A 31 -64.88 -101.77 REMARK 500 4 PRO A 45 6.43 -69.81 REMARK 500 4 HIS A 49 -18.00 -49.12 REMARK 500 4 LYS A 69 99.80 -62.66 REMARK 500 4 HIS A 78 38.29 -82.43 REMARK 500 4 VAL A 87 124.28 -37.18 REMARK 500 4 ARG A 110 44.61 -83.81 REMARK 500 5 SER A 6 88.75 -67.99 REMARK 500 5 ASP A 17 -175.56 -52.01 REMARK 500 5 GLU A 21 95.94 -67.30 REMARK 500 5 PRO A 24 18.52 -69.81 REMARK 500 5 PHE A 27 -31.22 -37.98 REMARK 500 5 VAL A 31 -64.45 -98.69 REMARK 500 REMARK 500 THIS ENTRY HAS 252 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DML A 8 124 UNP Q922R8 PDIA6_MOUSE 16 132 SEQADV 2DML GLY A 1 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML SER A 2 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML SER A 3 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML GLY A 4 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML SER A 5 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML SER A 6 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML GLY A 7 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML SER A 125 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML GLY A 126 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML PRO A 127 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML SER A 128 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML SER A 129 UNP Q922R8 CLONING ARTIFACT SEQADV 2DML GLY A 130 UNP Q922R8 CLONING ARTIFACT SEQRES 1 A 130 GLY SER SER GLY SER SER GLY ALA VAL SER GLY LEU TYR SEQRES 2 A 130 SER SER SER ASP ASP VAL ILE GLU LEU THR PRO SER ASN SEQRES 3 A 130 PHE ASN ARG GLU VAL ILE GLN SER ASP GLY LEU TRP LEU SEQRES 4 A 130 VAL GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS GLN ARG SEQRES 5 A 130 LEU THR PRO GLU TRP LYS LYS ALA ALA THR ALA LEU LYS SEQRES 6 A 130 ASP VAL VAL LYS VAL GLY ALA VAL ASN ALA ASP LYS HIS SEQRES 7 A 130 GLN SER LEU GLY GLY GLN TYR GLY VAL GLN GLY PHE PRO SEQRES 8 A 130 THR ILE LYS ILE PHE GLY ALA ASN LYS ASN LYS PRO GLU SEQRES 9 A 130 ASP TYR GLN GLY GLY ARG THR GLY GLU ALA ILE VAL ASP SEQRES 10 A 130 ALA ALA LEU SER ALA LEU ARG SER GLY PRO SER SER GLY HELIX 1 1 ASN A 26 VAL A 31 1 6 HELIX 2 2 CYS A 50 ARG A 52 5 3 HELIX 3 3 LEU A 53 LEU A 64 1 12 HELIX 4 4 HIS A 78 GLY A 86 1 9 HELIX 5 5 THR A 111 GLY A 126 1 16 SHEET 1 A 5 ILE A 20 GLU A 21 0 SHEET 2 A 5 LYS A 69 ASN A 74 1 O VAL A 70 N ILE A 20 SHEET 3 A 5 TRP A 38 TYR A 43 1 N LEU A 39 O LYS A 69 SHEET 4 A 5 THR A 92 PHE A 96 -1 O THR A 92 N PHE A 42 SHEET 5 A 5 GLU A 104 ASP A 105 -1 O GLU A 104 N ILE A 95 CISPEP 1 PHE A 90 PRO A 91 1 0.01 CISPEP 2 PHE A 90 PRO A 91 2 0.05 CISPEP 3 PHE A 90 PRO A 91 3 0.00 CISPEP 4 PHE A 90 PRO A 91 4 0.01 CISPEP 5 PHE A 90 PRO A 91 5 0.02 CISPEP 6 PHE A 90 PRO A 91 6 -0.06 CISPEP 7 PHE A 90 PRO A 91 7 0.03 CISPEP 8 PHE A 90 PRO A 91 8 0.04 CISPEP 9 PHE A 90 PRO A 91 9 -0.07 CISPEP 10 PHE A 90 PRO A 91 10 -0.07 CISPEP 11 PHE A 90 PRO A 91 11 0.06 CISPEP 12 PHE A 90 PRO A 91 12 -0.04 CISPEP 13 PHE A 90 PRO A 91 13 -0.02 CISPEP 14 PHE A 90 PRO A 91 14 -0.07 CISPEP 15 PHE A 90 PRO A 91 15 0.01 CISPEP 16 PHE A 90 PRO A 91 16 -0.01 CISPEP 17 PHE A 90 PRO A 91 17 -0.01 CISPEP 18 PHE A 90 PRO A 91 18 0.03 CISPEP 19 PHE A 90 PRO A 91 19 0.02 CISPEP 20 PHE A 90 PRO A 91 20 0.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1