data_2DMW # _entry.id 2DMW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DMW pdb_00002dmw 10.2210/pdb2dmw/pdb RCSB RCSB025602 ? ? WWPDB D_1000025602 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001001398.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DMW _pdbx_database_status.recvd_initial_deposition_date 2006-04-24 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohnishi, S.' 1 'Sato, M.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the LONGIN domain of Synaptobrevin-like protein 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohnishi, S.' 1 ? primary 'Sato, M.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'synaptobrevin-like 1 variant' _entity.formula_weight 14475.255 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'LONGIN domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Synaptobrevin-like protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERS RAFNFLNEIKKRFQTTYGSRAQTAPPYAMNSEFSSVLAAQLKHHSSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERS RAFNFLNEIKKRFQTTYGSRAQTAPPYAMNSEFSSVLAAQLKHHSSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001001398.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 ALA n 1 10 ILE n 1 11 LEU n 1 12 PHE n 1 13 ALA n 1 14 VAL n 1 15 VAL n 1 16 ALA n 1 17 ARG n 1 18 GLY n 1 19 THR n 1 20 THR n 1 21 ILE n 1 22 LEU n 1 23 ALA n 1 24 LYS n 1 25 HIS n 1 26 ALA n 1 27 TRP n 1 28 CYS n 1 29 GLY n 1 30 GLY n 1 31 ASN n 1 32 PHE n 1 33 LEU n 1 34 GLU n 1 35 VAL n 1 36 THR n 1 37 GLU n 1 38 GLN n 1 39 ILE n 1 40 LEU n 1 41 ALA n 1 42 LYS n 1 43 ILE n 1 44 PRO n 1 45 SER n 1 46 GLU n 1 47 ASN n 1 48 ASN n 1 49 LYS n 1 50 LEU n 1 51 THR n 1 52 TYR n 1 53 SER n 1 54 HIS n 1 55 GLY n 1 56 ASN n 1 57 TYR n 1 58 LEU n 1 59 PHE n 1 60 HIS n 1 61 TYR n 1 62 ILE n 1 63 CYS n 1 64 GLN n 1 65 ASP n 1 66 ARG n 1 67 ILE n 1 68 VAL n 1 69 TYR n 1 70 LEU n 1 71 CYS n 1 72 ILE n 1 73 THR n 1 74 ASP n 1 75 ASP n 1 76 ASP n 1 77 PHE n 1 78 GLU n 1 79 ARG n 1 80 SER n 1 81 ARG n 1 82 ALA n 1 83 PHE n 1 84 ASN n 1 85 PHE n 1 86 LEU n 1 87 ASN n 1 88 GLU n 1 89 ILE n 1 90 LYS n 1 91 LYS n 1 92 ARG n 1 93 PHE n 1 94 GLN n 1 95 THR n 1 96 THR n 1 97 TYR n 1 98 GLY n 1 99 SER n 1 100 ARG n 1 101 ALA n 1 102 GLN n 1 103 THR n 1 104 ALA n 1 105 PRO n 1 106 PRO n 1 107 TYR n 1 108 ALA n 1 109 MET n 1 110 ASN n 1 111 SER n 1 112 GLU n 1 113 PHE n 1 114 SER n 1 115 SER n 1 116 VAL n 1 117 LEU n 1 118 ALA n 1 119 ALA n 1 120 GLN n 1 121 LEU n 1 122 LYS n 1 123 HIS n 1 124 HIS n 1 125 SER n 1 126 SER n 1 127 GLY n 1 128 PRO n 1 129 SER n 1 130 SER n 1 131 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene SYBL1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050829-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q0JU02_HUMAN _struct_ref.pdbx_db_accession Q0JU02 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DMW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0JU02 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 118 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DMW GLY A 1 ? UNP Q0JU02 ? ? 'cloning artifact' 1 1 1 2DMW SER A 2 ? UNP Q0JU02 ? ? 'cloning artifact' 2 2 1 2DMW SER A 3 ? UNP Q0JU02 ? ? 'cloning artifact' 3 3 1 2DMW GLY A 4 ? UNP Q0JU02 ? ? 'cloning artifact' 4 4 1 2DMW SER A 5 ? UNP Q0JU02 ? ? 'cloning artifact' 5 5 1 2DMW SER A 6 ? UNP Q0JU02 ? ? 'cloning artifact' 6 6 1 2DMW GLY A 7 ? UNP Q0JU02 ? ? 'cloning artifact' 7 7 1 2DMW SER A 126 ? UNP Q0JU02 ? ? 'cloning artifact' 126 8 1 2DMW GLY A 127 ? UNP Q0JU02 ? ? 'cloning artifact' 127 9 1 2DMW PRO A 128 ? UNP Q0JU02 ? ? 'cloning artifact' 128 10 1 2DMW SER A 129 ? UNP Q0JU02 ? ? 'cloning artifact' 129 11 1 2DMW SER A 130 ? UNP Q0JU02 ? ? 'cloning artifact' 130 12 1 2DMW GLY A 131 ? UNP Q0JU02 ? ? 'cloning artifact' 131 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0mM protein U-15N, 13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DMW _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DMW _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DMW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.965 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DMW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DMW _struct.title 'Solution structure of the LONGIN domain of Synaptobrevin-like protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DMW _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;LONGIN domain, beta(2)-alpha-beta(3)-alpha(2), Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, MEMBRANE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 32 ? ALA A 41 ? PHE A 32 ALA A 41 1 ? 10 HELX_P HELX_P2 2 GLU A 78 ? TYR A 97 ? GLU A 78 TYR A 97 1 ? 20 HELX_P HELX_P3 3 TYR A 97 ? THR A 103 ? TYR A 97 THR A 103 1 ? 7 HELX_P HELX_P4 4 MET A 109 ? SER A 125 ? MET A 109 SER A 125 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 20 ? ALA A 26 ? THR A 20 ALA A 26 A 2 PHE A 12 ? ARG A 17 ? PHE A 12 ARG A 17 A 3 ILE A 67 ? ASP A 74 ? ILE A 67 ASP A 74 A 4 TYR A 57 ? GLN A 64 ? TYR A 57 GLN A 64 A 5 LYS A 49 ? HIS A 54 ? LYS A 49 HIS A 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 23 ? O ALA A 23 N VAL A 15 ? N VAL A 15 A 2 3 N ALA A 16 ? N ALA A 16 O VAL A 68 ? O VAL A 68 A 3 4 O ILE A 67 ? O ILE A 67 N GLN A 64 ? N GLN A 64 A 4 5 O PHE A 59 ? O PHE A 59 N TYR A 52 ? N TYR A 52 # _database_PDB_matrix.entry_id 2DMW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DMW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 HIS 25 25 25 HIS HIS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 TRP 27 27 27 TRP TRP A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 TYR 57 57 57 TYR TYR A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 CYS 63 63 63 CYS CYS A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 MET 109 109 109 MET MET A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 HIS 123 123 123 HIS HIS A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 SER 129 129 129 SER SER A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 GLY 131 131 131 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 13 ? ? -160.81 112.96 2 1 LEU A 22 ? ? -90.56 -68.82 3 1 ALA A 41 ? ? -59.89 -9.95 4 1 ASN A 47 ? ? -55.57 97.19 5 1 THR A 96 ? ? -99.59 -65.27 6 1 TYR A 97 ? ? -94.29 33.50 7 1 ALA A 104 ? ? -35.06 141.76 8 1 MET A 109 ? ? -105.45 42.59 9 1 SER A 126 ? ? -88.30 47.19 10 1 PRO A 128 ? ? -69.72 0.63 11 2 SER A 5 ? ? -133.83 -55.94 12 2 ALA A 9 ? ? -46.56 -71.72 13 2 LEU A 22 ? ? -86.21 -73.87 14 2 ASN A 47 ? ? -66.36 86.88 15 2 ASN A 56 ? ? -105.87 41.13 16 2 GLN A 64 ? ? -173.45 125.82 17 2 THR A 96 ? ? -97.62 -62.62 18 2 ALA A 104 ? ? -35.88 153.50 19 2 TYR A 107 ? ? -96.20 55.28 20 3 LEU A 22 ? ? -70.83 -73.92 21 3 LEU A 33 ? ? -37.34 -28.79 22 3 ASN A 47 ? ? -59.64 80.28 23 3 ASN A 48 ? ? -173.52 143.05 24 3 ASN A 56 ? ? -98.34 39.95 25 3 THR A 96 ? ? -92.37 -67.61 26 3 ALA A 104 ? ? -40.40 155.12 27 3 TYR A 107 ? ? -90.73 52.15 28 3 MET A 109 ? ? -90.45 41.41 29 4 SER A 2 ? ? 35.20 43.29 30 4 LEU A 11 ? ? -131.67 -45.67 31 4 ALA A 13 ? ? -160.98 112.94 32 4 ASN A 47 ? ? -49.56 88.41 33 4 ASN A 56 ? ? -97.77 39.71 34 4 PHE A 77 ? ? -41.66 155.22 35 4 THR A 96 ? ? -93.73 -66.80 36 4 THR A 103 ? ? -99.88 -63.60 37 4 ALA A 104 ? ? -34.09 138.58 38 4 ALA A 108 ? ? -106.13 -61.30 39 4 MET A 109 ? ? -87.57 46.90 40 5 HIS A 25 ? ? -160.70 109.80 41 5 ASN A 47 ? ? -52.22 86.50 42 5 ASN A 48 ? ? -174.85 142.84 43 5 ASN A 56 ? ? -82.96 39.14 44 5 THR A 96 ? ? -98.63 -64.66 45 5 ALA A 104 ? ? -35.31 139.89 46 5 MET A 109 ? ? -97.65 35.64 47 6 SER A 5 ? ? -37.81 155.51 48 6 ALA A 9 ? ? -84.18 -71.97 49 6 LEU A 33 ? ? -35.94 -31.00 50 6 ASN A 47 ? ? -45.35 96.90 51 6 ASN A 48 ? ? -174.88 145.53 52 6 ASN A 56 ? ? -98.82 39.98 53 6 PHE A 77 ? ? -49.01 154.18 54 6 THR A 96 ? ? -99.51 -67.93 55 6 TYR A 97 ? ? -93.68 34.48 56 6 MET A 109 ? ? -96.29 47.10 57 6 SER A 126 ? ? -104.81 41.33 58 7 ASN A 47 ? ? -63.85 99.03 59 7 ASN A 56 ? ? -86.34 39.61 60 7 GLN A 64 ? ? -172.38 128.17 61 7 PHE A 77 ? ? -48.01 165.10 62 7 THR A 96 ? ? -93.46 -67.59 63 8 HIS A 25 ? ? -161.70 110.04 64 8 PRO A 44 ? ? -69.70 -175.24 65 8 ASN A 47 ? ? -49.06 92.07 66 8 ASN A 56 ? ? -94.27 42.42 67 8 GLN A 64 ? ? -174.35 125.80 68 8 THR A 96 ? ? -100.20 -67.85 69 8 ALA A 101 ? ? -38.92 -27.27 70 8 THR A 103 ? ? -103.47 43.90 71 8 ALA A 108 ? ? -109.84 -60.29 72 8 MET A 109 ? ? -76.54 49.59 73 9 ALA A 9 ? ? -175.00 142.35 74 9 ALA A 13 ? ? -160.15 118.43 75 9 LEU A 33 ? ? -35.96 -33.38 76 9 ASN A 56 ? ? -84.88 42.87 77 9 GLN A 64 ? ? -172.38 127.03 78 9 PHE A 77 ? ? -38.98 136.46 79 9 THR A 96 ? ? -97.58 -68.05 80 10 LEU A 33 ? ? -35.98 -32.85 81 10 ASN A 56 ? ? -88.69 38.88 82 10 THR A 96 ? ? -98.52 -63.73 83 10 THR A 103 ? ? -107.35 -65.59 84 10 ALA A 104 ? ? -34.66 141.92 85 10 ALA A 108 ? ? -93.70 -70.36 86 10 MET A 109 ? ? -83.25 45.30 87 10 HIS A 123 ? ? -53.46 -70.81 88 10 SER A 126 ? ? -38.05 125.10 89 11 HIS A 25 ? ? -161.79 110.58 90 11 PRO A 44 ? ? -69.78 -167.80 91 11 ASN A 47 ? ? -58.76 108.94 92 11 ASN A 48 ? ? -173.19 145.51 93 11 PHE A 77 ? ? -35.79 143.85 94 11 THR A 96 ? ? -90.78 -66.07 95 11 PRO A 128 ? ? -69.76 97.21 96 11 SER A 129 ? ? 36.98 47.49 97 12 SER A 2 ? ? -82.25 44.64 98 12 LEU A 33 ? ? -37.25 -33.98 99 12 ASN A 47 ? ? -63.75 81.95 100 12 ASN A 48 ? ? -175.02 124.61 101 12 PHE A 77 ? ? -42.54 152.76 102 12 SER A 129 ? ? -34.70 121.86 103 13 SER A 3 ? ? -105.44 42.12 104 13 HIS A 25 ? ? -160.76 109.07 105 13 PRO A 44 ? ? -69.73 -175.31 106 13 ASN A 47 ? ? -58.89 90.54 107 13 ASN A 56 ? ? -82.51 41.06 108 13 GLN A 64 ? ? -170.48 128.58 109 13 PHE A 77 ? ? -54.86 99.79 110 13 THR A 96 ? ? -99.68 -66.64 111 13 THR A 103 ? ? -103.08 -64.66 112 13 ALA A 104 ? ? -34.21 140.97 113 13 MET A 109 ? ? -102.73 42.11 114 14 SER A 6 ? ? -169.04 116.68 115 14 ASN A 47 ? ? -66.35 79.24 116 14 ASN A 48 ? ? -174.96 147.73 117 14 ASN A 56 ? ? -88.22 41.70 118 14 PHE A 77 ? ? -35.30 131.42 119 14 THR A 96 ? ? -99.77 -66.19 120 14 ALA A 104 ? ? -38.46 152.98 121 14 MET A 109 ? ? -105.66 54.17 122 15 SER A 2 ? ? -51.31 102.18 123 15 LEU A 11 ? ? -131.47 -38.47 124 15 ALA A 13 ? ? -160.86 116.96 125 15 ASN A 47 ? ? -54.96 95.96 126 15 ASN A 48 ? ? -172.14 138.72 127 15 ASN A 56 ? ? -95.66 37.20 128 15 GLN A 64 ? ? -172.45 126.12 129 15 PHE A 77 ? ? -46.66 152.28 130 15 THR A 96 ? ? -96.96 -63.18 131 15 THR A 103 ? ? -107.84 -63.80 132 15 ALA A 104 ? ? -35.59 141.60 133 16 SER A 45 ? ? -86.91 35.70 134 16 ASN A 47 ? ? -59.94 79.86 135 16 ASN A 56 ? ? -90.62 42.79 136 16 GLN A 64 ? ? -132.05 -76.38 137 16 ASP A 65 ? ? -92.43 53.42 138 16 ASP A 76 ? ? -101.57 51.53 139 16 THR A 96 ? ? -100.82 -67.01 140 16 ALA A 108 ? ? -96.08 -65.97 141 16 MET A 109 ? ? -91.53 54.78 142 17 ALA A 104 ? ? -37.16 140.05 143 18 HIS A 25 ? ? -162.00 108.16 144 18 LEU A 33 ? ? -36.65 -31.67 145 18 GLU A 46 ? ? -45.46 155.76 146 18 ASN A 56 ? ? -87.97 32.05 147 18 ASN A 84 ? ? -60.80 -70.67 148 18 THR A 96 ? ? -100.01 -67.09 149 18 ALA A 101 ? ? -59.85 -9.98 150 18 THR A 103 ? ? -130.45 -57.26 151 18 ALA A 104 ? ? -35.86 154.43 152 18 MET A 109 ? ? -97.81 43.06 153 18 PRO A 128 ? ? -69.80 -177.40 154 19 SER A 3 ? ? -34.57 118.39 155 19 SER A 6 ? ? -34.90 144.63 156 19 MET A 8 ? ? 32.03 52.78 157 19 ASN A 47 ? ? -61.89 94.69 158 19 ASN A 56 ? ? -81.92 41.45 159 19 PHE A 77 ? ? -35.24 118.78 160 19 THR A 96 ? ? -97.26 -63.27 161 20 MET A 8 ? ? -88.84 42.10 162 20 THR A 19 ? ? 49.35 28.49 163 20 LEU A 33 ? ? -37.08 -37.90 164 20 PRO A 44 ? ? -69.73 -173.46 165 20 ASN A 47 ? ? -58.40 95.30 166 20 ASN A 48 ? ? -174.40 139.37 167 20 ASN A 56 ? ? -86.85 37.15 168 20 THR A 96 ? ? -96.53 -65.91 #