HEADER LIGASE 25-APR-06 2DN8 TITLE SOLUTION STRUCTURE OF RSGI RUH-053, AN APO-BIOTIN CARBOXY CARRIER TITLE 2 PROTEIN FROM HUMAN TRANSCARBOXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COA CARBOXYLASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BIOTINYL-BINDING DOMAIN, RESIDUES 8-94; COMPND 5 SYNONYM: BIOTIN CARBOXY CARRIER PROTEIN; COMPND 6 EC: 6.4.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050509-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BIOTIN REQUIRED ENZYME, TRANSCARBOXYLASE, ACETYL COA CARBOXYLASE, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DN8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DN8 1 VERSN REVDAT 1 25-OCT-06 2DN8 0 JRNL AUTH A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-053, AN APO-BIOTIN CARBOXY JRNL TITL 2 CARRIER PROTEIN FROM HUMAN TRANSCARBOXYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DN8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025614. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.40MM DOMAIN U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL(PH 7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10%D2O, REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04, REMARK 210 KUJIRA 0.955, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 102.90 -174.84 REMARK 500 1 GLU A 14 89.99 -171.71 REMARK 500 1 ALA A 25 172.93 -56.78 REMARK 500 1 LYS A 27 109.11 -164.96 REMARK 500 1 ALA A 41 98.06 -63.51 REMARK 500 1 ARG A 62 153.15 -35.90 REMARK 500 1 VAL A 81 -58.30 -130.31 REMARK 500 1 SER A 90 135.65 -179.67 REMARK 500 1 LYS A 91 81.04 -169.55 REMARK 500 1 SER A 95 122.63 179.38 REMARK 500 2 SER A 6 136.06 -171.20 REMARK 500 2 CYS A 9 80.89 44.12 REMARK 500 2 PHE A 11 94.71 64.22 REMARK 500 2 ASN A 15 84.92 -158.73 REMARK 500 2 THR A 18 50.54 -108.28 REMARK 500 2 ALA A 25 172.23 -55.39 REMARK 500 2 THR A 29 -62.23 -127.78 REMARK 500 2 ALA A 41 93.24 -64.31 REMARK 500 2 ARG A 62 153.56 -36.18 REMARK 500 2 ILE A 68 -69.60 -126.36 REMARK 500 2 SER A 90 127.27 179.24 REMARK 500 2 LYS A 91 92.83 -164.21 REMARK 500 2 VAL A 92 97.42 -52.66 REMARK 500 2 SER A 99 145.78 -179.63 REMARK 500 3 THR A 8 67.58 -108.71 REMARK 500 3 CYS A 9 -62.85 -106.61 REMARK 500 3 VAL A 10 103.71 63.96 REMARK 500 3 PHE A 11 130.88 -177.24 REMARK 500 3 GLU A 12 115.82 -166.41 REMARK 500 3 ASP A 16 87.15 -172.34 REMARK 500 3 THR A 29 -69.50 -130.22 REMARK 500 3 ALA A 41 94.99 -65.80 REMARK 500 3 ARG A 62 150.62 -35.98 REMARK 500 3 ILE A 68 -72.23 -117.62 REMARK 500 3 VAL A 81 -51.05 -133.69 REMARK 500 3 SER A 90 145.46 -178.02 REMARK 500 3 LYS A 91 -139.59 -136.69 REMARK 500 3 SER A 95 149.43 167.38 REMARK 500 3 SER A 99 108.25 59.87 REMARK 500 4 SER A 2 -59.24 -152.31 REMARK 500 4 SER A 3 149.42 -179.46 REMARK 500 4 PHE A 11 140.10 -173.13 REMARK 500 4 ALA A 25 -179.30 -63.08 REMARK 500 4 LYS A 27 114.67 -164.82 REMARK 500 4 THR A 29 -62.20 -139.16 REMARK 500 4 ALA A 41 93.11 -63.80 REMARK 500 4 ARG A 62 153.27 -36.36 REMARK 500 4 ILE A 68 -61.16 -101.16 REMARK 500 4 ARG A 70 158.44 -48.10 REMARK 500 4 VAL A 81 -58.00 -122.17 REMARK 500 REMARK 500 THIS ENTRY HAS 269 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000770.1 RELATED DB: TARGETDB DBREF 2DN8 A 8 94 UNP Q6KE89 Q6KE89_HUMAN 885 971 SEQADV 2DN8 GLY A 1 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 SER A 2 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 SER A 3 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 GLY A 4 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 SER A 5 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 SER A 6 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 GLY A 7 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 SER A 95 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 GLY A 96 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 PRO A 97 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 SER A 98 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 SER A 99 UNP Q6KE89 CLONING ARTIFACT SEQADV 2DN8 GLY A 100 UNP Q6KE89 CLONING ARTIFACT SEQRES 1 A 100 GLY SER SER GLY SER SER GLY THR CYS VAL PHE GLU LYS SEQRES 2 A 100 GLU ASN ASP PRO THR VAL LEU ARG SER PRO SER ALA GLY SEQRES 3 A 100 LYS LEU THR GLN TYR THR VAL GLU ASP GLY GLY HIS VAL SEQRES 4 A 100 GLU ALA GLY SER SER TYR ALA GLU MET GLU VAL MET LYS SEQRES 5 A 100 MET ILE MET THR LEU ASN VAL GLN GLU ARG GLY ARG VAL SEQRES 6 A 100 LYS TYR ILE LYS ARG PRO GLY ALA VAL LEU GLU ALA GLY SEQRES 7 A 100 CYS VAL VAL ALA ARG LEU GLU LEU ASP ASP PRO SER LYS SEQRES 8 A 100 VAL HIS PRO SER GLY PRO SER SER GLY SHEET 1 A 4 VAL A 19 ARG A 21 0 SHEET 2 A 4 VAL A 80 LEU A 84 -1 O ALA A 82 N LEU A 20 SHEET 3 A 4 GLY A 63 TYR A 67 -1 N LYS A 66 O ARG A 83 SHEET 4 A 4 GLY A 37 VAL A 39 -1 N GLY A 37 O VAL A 65 SHEET 1 B 4 MET A 53 ASN A 58 0 SHEET 2 B 4 SER A 44 VAL A 50 -1 N VAL A 50 O MET A 53 SHEET 3 B 4 GLY A 26 TYR A 31 -1 N GLN A 30 O GLU A 47 SHEET 4 B 4 VAL A 74 LEU A 75 -1 O LEU A 75 N GLY A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1