HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-APR-06 2DNA TITLE SOLUTION STRUCTURE OF RSGI RUH-056, A UBA DOMAIN FROM MOUSE CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNNAMED PROTEIN PRODUCT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL OF DSK2 PROTEIN, RESIDUES 8-61; COMPND 5 SYNONYM: UBA DOMAIN, UBIQUITIN-ASSOCIATED DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050425-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS UBIQUITIN ASSOCIATED DOMAIN, DSK2 PROTEIN, PROTEASOME, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNA 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNA 1 VERSN REVDAT 1 25-OCT-06 2DNA 0 JRNL AUTH A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-056, A UBA DOMAIN FROM MOUSE JRNL TITL 2 CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025616. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.03MM DOMAIN U-15N, 13C; 20MM D REMARK 210 -TRIS-HCL(PH 7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O, REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04, REMARK 210 KUJIRA 0.955, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 37 H LEU A 41 1.56 REMARK 500 O THR A 48 H ILE A 52 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 109.63 62.17 REMARK 500 1 SER A 6 118.12 -164.30 REMARK 500 1 SER A 11 131.63 -178.68 REMARK 500 1 LEU A 12 85.85 65.80 REMARK 500 1 PHE A 31 75.55 -69.34 REMARK 500 1 ASN A 33 96.90 -44.35 REMARK 500 1 PHE A 61 98.70 51.56 REMARK 500 1 SER A 62 -58.14 -148.53 REMARK 500 2 SER A 2 98.38 -174.62 REMARK 500 2 LEU A 12 83.16 -154.88 REMARK 500 2 PHE A 19 41.53 -96.68 REMARK 500 2 PHE A 31 79.19 -68.78 REMARK 500 2 ASN A 33 92.96 -58.38 REMARK 500 2 PHE A 61 97.52 -68.35 REMARK 500 3 SER A 3 81.43 40.24 REMARK 500 3 SER A 9 121.21 63.54 REMARK 500 3 SER A 11 88.27 64.16 REMARK 500 3 LEU A 12 100.95 -173.11 REMARK 500 3 ALA A 14 154.56 -48.83 REMARK 500 3 PHE A 19 34.89 -96.81 REMARK 500 3 ASN A 33 95.38 -47.16 REMARK 500 3 PHE A 61 97.22 47.58 REMARK 500 3 SER A 65 -60.17 -104.89 REMARK 500 4 SER A 5 151.90 179.59 REMARK 500 4 HIS A 10 -59.86 -154.90 REMARK 500 4 ALA A 14 154.18 -47.18 REMARK 500 4 PHE A 19 30.72 -90.72 REMARK 500 4 PHE A 31 75.86 -68.33 REMARK 500 4 ASN A 33 84.67 -60.06 REMARK 500 4 ASP A 47 83.20 -160.27 REMARK 500 4 SER A 66 102.33 -50.00 REMARK 500 5 SER A 2 85.16 60.40 REMARK 500 5 SER A 3 -58.35 -142.09 REMARK 500 5 SER A 5 -57.89 74.58 REMARK 500 5 HIS A 10 95.33 64.62 REMARK 500 5 LEU A 12 -107.32 -80.04 REMARK 500 5 GLN A 13 158.75 66.06 REMARK 500 5 PHE A 31 71.44 -68.19 REMARK 500 5 ASN A 33 96.93 -43.93 REMARK 500 5 ASP A 47 85.01 -171.44 REMARK 500 5 SER A 66 161.34 -44.27 REMARK 500 6 SER A 9 -57.20 -134.88 REMARK 500 6 HIS A 10 -60.97 -98.90 REMARK 500 6 LEU A 12 175.00 56.65 REMARK 500 6 ALA A 14 154.82 -44.31 REMARK 500 6 PHE A 19 45.33 -105.08 REMARK 500 6 MET A 23 -36.24 -38.29 REMARK 500 6 PHE A 31 75.17 -68.83 REMARK 500 6 ASN A 33 97.94 -40.78 REMARK 500 6 ASP A 47 85.75 -157.15 REMARK 500 REMARK 500 THIS ENTRY HAS 181 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008001321.1 RELATED DB: TARGETDB DBREF 2DNA A 8 61 UNP Q14DR8 Q14DR8_MOUSE 556 609 SEQADV 2DNA GLY A 1 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA SER A 2 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA SER A 3 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA GLY A 4 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA SER A 5 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA SER A 6 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA GLY A 7 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA SER A 62 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA GLY A 63 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA PRO A 64 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA SER A 65 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA SER A 66 UNP Q14DR8 CLONING ARTIFACT SEQADV 2DNA GLY A 67 UNP Q14DR8 CLONING ARTIFACT SEQRES 1 A 67 GLY SER SER GLY SER SER GLY PRO SER HIS SER LEU GLN SEQRES 2 A 67 ALA PRO GLU VAL ARG PHE SER LYS GLU MET GLU CYS LEU SEQRES 3 A 67 GLN ALA MET GLY PHE VAL ASN TYR ASN ALA ASN LEU GLN SEQRES 4 A 67 ALA LEU ILE ALA THR ASP GLY ASP THR ASN ALA ALA ILE SEQRES 5 A 67 TYR LYS LEU LYS SER SER GLN GLY PHE SER GLY PRO SER SEQRES 6 A 67 SER GLY HELIX 1 1 ALA A 14 PHE A 19 1 6 HELIX 2 2 PHE A 19 GLY A 30 1 12 HELIX 3 3 ASN A 33 THR A 44 1 12 HELIX 4 4 ASP A 47 SER A 58 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1