data_2DNG # _entry.id 2DNG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNG pdb_00002dng 10.2210/pdb2dng/pdb RCSB RCSB025620 ? ? WWPDB D_1000025620 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmi002018155.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNG _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of RNA binding domain in Eukaryotic translation initiation factor 4H' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Eukaryotic translation initiation factor 4H' _entity.formula_weight 11223.394 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'eIF-4H, Williams-Beuren syndrome chromosome region 1 protein homolog' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALL GDRSLRVDIAEGRKQDKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALL GDRSLRVDIAEGRKQDKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmi002018155.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 GLU n 1 10 LEU n 1 11 PRO n 1 12 THR n 1 13 GLU n 1 14 PRO n 1 15 PRO n 1 16 TYR n 1 17 THR n 1 18 ALA n 1 19 TYR n 1 20 VAL n 1 21 GLY n 1 22 ASN n 1 23 LEU n 1 24 PRO n 1 25 PHE n 1 26 ASN n 1 27 THR n 1 28 VAL n 1 29 GLN n 1 30 GLY n 1 31 ASP n 1 32 ILE n 1 33 ASP n 1 34 ALA n 1 35 ILE n 1 36 PHE n 1 37 LYS n 1 38 ASP n 1 39 LEU n 1 40 SER n 1 41 ILE n 1 42 ARG n 1 43 SER n 1 44 VAL n 1 45 ARG n 1 46 LEU n 1 47 VAL n 1 48 ARG n 1 49 ASP n 1 50 LYS n 1 51 ASP n 1 52 THR n 1 53 ASP n 1 54 LYS n 1 55 PHE n 1 56 LYS n 1 57 GLY n 1 58 PHE n 1 59 CYS n 1 60 TYR n 1 61 VAL n 1 62 GLU n 1 63 PHE n 1 64 ASP n 1 65 GLU n 1 66 VAL n 1 67 ASP n 1 68 SER n 1 69 LEU n 1 70 LYS n 1 71 GLU n 1 72 ALA n 1 73 LEU n 1 74 THR n 1 75 TYR n 1 76 ASP n 1 77 GLY n 1 78 ALA n 1 79 LEU n 1 80 LEU n 1 81 GLY n 1 82 ASP n 1 83 ARG n 1 84 SER n 1 85 LEU n 1 86 ARG n 1 87 VAL n 1 88 ASP n 1 89 ILE n 1 90 ALA n 1 91 GLU n 1 92 GLY n 1 93 ARG n 1 94 LYS n 1 95 GLN n 1 96 ASP n 1 97 LYS n 1 98 SER n 1 99 GLY n 1 100 PRO n 1 101 SER n 1 102 SER n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Wbscr1, Eif4h' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050627-12 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IF4H_MOUSE _struct_ref.pdbx_db_accession Q9WUK2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WUK2 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 33 _struct_ref_seq.pdbx_auth_seq_align_end 122 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNG GLY A 1 ? UNP Q9WUK2 ? ? 'cloning artifact' 26 1 1 2DNG SER A 2 ? UNP Q9WUK2 ? ? 'cloning artifact' 27 2 1 2DNG SER A 3 ? UNP Q9WUK2 ? ? 'cloning artifact' 28 3 1 2DNG GLY A 4 ? UNP Q9WUK2 ? ? 'cloning artifact' 29 4 1 2DNG SER A 5 ? UNP Q9WUK2 ? ? 'cloning artifact' 30 5 1 2DNG SER A 6 ? UNP Q9WUK2 ? ? 'cloning artifact' 31 6 1 2DNG GLY A 7 ? UNP Q9WUK2 ? ? 'cloning artifact' 32 7 1 2DNG SER A 98 ? UNP Q9WUK2 ? ? 'cloning artifact' 123 8 1 2DNG GLY A 99 ? UNP Q9WUK2 ? ? 'cloning artifact' 124 9 1 2DNG PRO A 100 ? UNP Q9WUK2 ? ? 'cloning artifact' 125 10 1 2DNG SER A 101 ? UNP Q9WUK2 ? ? 'cloning artifact' 126 11 1 2DNG SER A 102 ? UNP Q9WUK2 ? ? 'cloning artifact' 127 12 1 2DNG GLY A 103 ? UNP Q9WUK2 ? ? 'cloning artifact' 128 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.18mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNG _pdbx_nmr_refine.method 'torsion angle dynamics,restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNG _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNG _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.9742 Kobayashi,N 4 'structure solution' CYANA 2.0.17 Guntert,P 5 refinement CYANA 2.0.17 Guntert,P 6 # _exptl.entry_id 2DNG _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNG _struct.title 'Solution structure of RNA binding domain in Eukaryotic translation initiation factor 4H' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNG _struct_keywords.pdbx_keywords TRANSLATION _struct_keywords.text ;RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSLATION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 28 ? PHE A 36 ? VAL A 53 PHE A 61 1 ? 9 HELX_P HELX_P2 2 GLU A 65 ? LEU A 73 ? GLU A 90 LEU A 98 1 ? 9 HELX_P HELX_P3 3 THR A 74 ? ASP A 76 ? THR A 99 ASP A 101 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 1 -0.05 2 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 2 -0.10 3 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 3 -0.06 4 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 4 0.01 5 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 5 -0.02 6 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 6 0.01 7 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 7 -0.08 8 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 8 -0.01 9 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 9 -0.03 10 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 10 0.02 11 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 11 -0.07 12 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 12 -0.14 13 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 13 -0.07 14 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 14 -0.04 15 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 15 -0.06 16 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 16 -0.10 17 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 17 -0.06 18 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 18 -0.08 19 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 19 -0.11 20 PRO 14 A . ? PRO 39 A PRO 15 A ? PRO 40 A 20 -0.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 41 ? ARG A 48 ? ILE A 66 ARG A 73 A 2 PHE A 55 ? PHE A 63 ? PHE A 80 PHE A 88 A 3 TYR A 16 ? GLY A 21 ? TYR A 41 GLY A 46 A 4 ARG A 86 ? ILE A 89 ? ARG A 111 ILE A 114 B 1 LEU A 79 ? LEU A 80 ? LEU A 104 LEU A 105 B 2 ARG A 83 ? SER A 84 ? ARG A 108 SER A 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 45 ? N ARG A 70 O TYR A 60 ? O TYR A 85 A 2 3 O CYS A 59 ? O CYS A 84 N VAL A 20 ? N VAL A 45 A 3 4 N TYR A 19 ? N TYR A 44 O ASP A 88 ? O ASP A 113 B 1 2 N LEU A 80 ? N LEU A 105 O ARG A 83 ? O ARG A 108 # _database_PDB_matrix.entry_id 2DNG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 26 26 GLY GLY A . n A 1 2 SER 2 27 27 SER SER A . n A 1 3 SER 3 28 28 SER SER A . n A 1 4 GLY 4 29 29 GLY GLY A . n A 1 5 SER 5 30 30 SER SER A . n A 1 6 SER 6 31 31 SER SER A . n A 1 7 GLY 7 32 32 GLY GLY A . n A 1 8 LYS 8 33 33 LYS LYS A . n A 1 9 GLU 9 34 34 GLU GLU A . n A 1 10 LEU 10 35 35 LEU LEU A . n A 1 11 PRO 11 36 36 PRO PRO A . n A 1 12 THR 12 37 37 THR THR A . n A 1 13 GLU 13 38 38 GLU GLU A . n A 1 14 PRO 14 39 39 PRO PRO A . n A 1 15 PRO 15 40 40 PRO PRO A . n A 1 16 TYR 16 41 41 TYR TYR A . n A 1 17 THR 17 42 42 THR THR A . n A 1 18 ALA 18 43 43 ALA ALA A . n A 1 19 TYR 19 44 44 TYR TYR A . n A 1 20 VAL 20 45 45 VAL VAL A . n A 1 21 GLY 21 46 46 GLY GLY A . n A 1 22 ASN 22 47 47 ASN ASN A . n A 1 23 LEU 23 48 48 LEU LEU A . n A 1 24 PRO 24 49 49 PRO PRO A . n A 1 25 PHE 25 50 50 PHE PHE A . n A 1 26 ASN 26 51 51 ASN ASN A . n A 1 27 THR 27 52 52 THR THR A . n A 1 28 VAL 28 53 53 VAL VAL A . n A 1 29 GLN 29 54 54 GLN GLN A . n A 1 30 GLY 30 55 55 GLY GLY A . n A 1 31 ASP 31 56 56 ASP ASP A . n A 1 32 ILE 32 57 57 ILE ILE A . n A 1 33 ASP 33 58 58 ASP ASP A . n A 1 34 ALA 34 59 59 ALA ALA A . n A 1 35 ILE 35 60 60 ILE ILE A . n A 1 36 PHE 36 61 61 PHE PHE A . n A 1 37 LYS 37 62 62 LYS LYS A . n A 1 38 ASP 38 63 63 ASP ASP A . n A 1 39 LEU 39 64 64 LEU LEU A . n A 1 40 SER 40 65 65 SER SER A . n A 1 41 ILE 41 66 66 ILE ILE A . n A 1 42 ARG 42 67 67 ARG ARG A . n A 1 43 SER 43 68 68 SER SER A . n A 1 44 VAL 44 69 69 VAL VAL A . n A 1 45 ARG 45 70 70 ARG ARG A . n A 1 46 LEU 46 71 71 LEU LEU A . n A 1 47 VAL 47 72 72 VAL VAL A . n A 1 48 ARG 48 73 73 ARG ARG A . n A 1 49 ASP 49 74 74 ASP ASP A . n A 1 50 LYS 50 75 75 LYS LYS A . n A 1 51 ASP 51 76 76 ASP ASP A . n A 1 52 THR 52 77 77 THR THR A . n A 1 53 ASP 53 78 78 ASP ASP A . n A 1 54 LYS 54 79 79 LYS LYS A . n A 1 55 PHE 55 80 80 PHE PHE A . n A 1 56 LYS 56 81 81 LYS LYS A . n A 1 57 GLY 57 82 82 GLY GLY A . n A 1 58 PHE 58 83 83 PHE PHE A . n A 1 59 CYS 59 84 84 CYS CYS A . n A 1 60 TYR 60 85 85 TYR TYR A . n A 1 61 VAL 61 86 86 VAL VAL A . n A 1 62 GLU 62 87 87 GLU GLU A . n A 1 63 PHE 63 88 88 PHE PHE A . n A 1 64 ASP 64 89 89 ASP ASP A . n A 1 65 GLU 65 90 90 GLU GLU A . n A 1 66 VAL 66 91 91 VAL VAL A . n A 1 67 ASP 67 92 92 ASP ASP A . n A 1 68 SER 68 93 93 SER SER A . n A 1 69 LEU 69 94 94 LEU LEU A . n A 1 70 LYS 70 95 95 LYS LYS A . n A 1 71 GLU 71 96 96 GLU GLU A . n A 1 72 ALA 72 97 97 ALA ALA A . n A 1 73 LEU 73 98 98 LEU LEU A . n A 1 74 THR 74 99 99 THR THR A . n A 1 75 TYR 75 100 100 TYR TYR A . n A 1 76 ASP 76 101 101 ASP ASP A . n A 1 77 GLY 77 102 102 GLY GLY A . n A 1 78 ALA 78 103 103 ALA ALA A . n A 1 79 LEU 79 104 104 LEU LEU A . n A 1 80 LEU 80 105 105 LEU LEU A . n A 1 81 GLY 81 106 106 GLY GLY A . n A 1 82 ASP 82 107 107 ASP ASP A . n A 1 83 ARG 83 108 108 ARG ARG A . n A 1 84 SER 84 109 109 SER SER A . n A 1 85 LEU 85 110 110 LEU LEU A . n A 1 86 ARG 86 111 111 ARG ARG A . n A 1 87 VAL 87 112 112 VAL VAL A . n A 1 88 ASP 88 113 113 ASP ASP A . n A 1 89 ILE 89 114 114 ILE ILE A . n A 1 90 ALA 90 115 115 ALA ALA A . n A 1 91 GLU 91 116 116 GLU GLU A . n A 1 92 GLY 92 117 117 GLY GLY A . n A 1 93 ARG 93 118 118 ARG ARG A . n A 1 94 LYS 94 119 119 LYS LYS A . n A 1 95 GLN 95 120 120 GLN GLN A . n A 1 96 ASP 96 121 121 ASP ASP A . n A 1 97 LYS 97 122 122 LYS LYS A . n A 1 98 SER 98 123 123 SER SER A . n A 1 99 GLY 99 124 124 GLY GLY A . n A 1 100 PRO 100 125 125 PRO PRO A . n A 1 101 SER 101 126 126 SER SER A . n A 1 102 SER 102 127 127 SER SER A . n A 1 103 GLY 103 128 128 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 35 ? ? -43.37 150.59 2 1 PRO A 36 ? ? -48.09 157.04 3 1 PRO A 49 ? ? -48.61 159.99 4 1 ASP A 76 ? ? -85.36 -70.35 5 1 ASP A 78 ? ? 74.10 40.97 6 1 PHE A 80 ? ? -39.25 127.58 7 1 ASP A 89 ? ? -60.78 -71.42 8 1 PRO A 125 ? ? -47.92 93.06 9 1 SER A 127 ? ? -36.54 118.25 10 2 LYS A 33 ? ? -45.24 169.74 11 2 GLU A 34 ? ? -44.02 157.80 12 2 ASN A 47 ? ? 71.10 51.40 13 2 PRO A 49 ? ? -48.89 166.05 14 2 ASN A 51 ? ? -101.72 44.28 15 2 ASP A 74 ? ? -65.59 -178.99 16 2 ASP A 101 ? ? -69.51 77.08 17 2 ASP A 121 ? ? -37.80 144.78 18 3 SER A 31 ? ? -38.57 -33.35 19 3 LYS A 33 ? ? -49.08 166.52 20 3 ASN A 47 ? ? 71.18 41.75 21 3 ASN A 51 ? ? -109.39 77.86 22 3 ASP A 74 ? ? -53.39 177.21 23 3 PHE A 80 ? ? -48.96 104.74 24 4 SER A 30 ? ? -121.74 -55.82 25 4 PRO A 49 ? ? -48.98 164.71 26 4 ASN A 51 ? ? -87.09 46.79 27 4 PHE A 80 ? ? -34.82 111.17 28 4 ASP A 89 ? ? -73.67 -70.75 29 4 ASP A 101 ? ? -67.51 87.23 30 4 ALA A 115 ? ? -68.79 99.29 31 5 LYS A 33 ? ? -41.52 156.10 32 5 PRO A 49 ? ? -48.09 160.97 33 5 ASN A 51 ? ? -108.60 76.62 34 5 ASP A 101 ? ? -77.46 46.92 35 6 PRO A 49 ? ? -48.81 162.58 36 6 ASN A 51 ? ? -85.92 47.95 37 6 SER A 68 ? ? -171.18 148.49 38 6 ASP A 76 ? ? -107.18 -70.03 39 6 PHE A 80 ? ? -35.06 152.03 40 6 LEU A 98 ? ? -49.17 -18.99 41 6 ASP A 101 ? ? -57.76 84.61 42 6 ALA A 115 ? ? -58.41 82.77 43 6 LYS A 119 ? ? -90.04 -60.14 44 6 LYS A 122 ? ? -173.21 140.19 45 7 GLU A 34 ? ? -34.62 130.12 46 7 PRO A 49 ? ? -48.97 160.66 47 7 ASN A 51 ? ? -80.90 44.80 48 7 PHE A 80 ? ? -35.93 107.30 49 7 ASP A 101 ? ? -70.00 93.02 50 7 GLU A 116 ? ? -39.45 137.10 51 7 ARG A 118 ? ? -51.90 170.86 52 7 PRO A 125 ? ? -48.97 -179.92 53 8 LYS A 33 ? ? -47.23 174.63 54 8 PRO A 49 ? ? -49.12 162.84 55 8 ASN A 51 ? ? -82.69 44.87 56 8 ASP A 74 ? ? -62.48 -175.05 57 8 LYS A 75 ? ? -113.85 -70.79 58 8 ASP A 78 ? ? 49.82 26.56 59 8 ASP A 89 ? ? -98.44 -62.64 60 8 ALA A 115 ? ? -60.12 82.54 61 8 ASP A 121 ? ? -49.36 164.49 62 9 SER A 27 ? ? -37.95 106.72 63 9 ASN A 51 ? ? -109.81 79.51 64 9 GLN A 54 ? ? -36.44 -39.51 65 10 SER A 27 ? ? -51.21 177.14 66 10 LYS A 33 ? ? -40.41 161.78 67 10 ASN A 47 ? ? 71.50 40.73 68 10 PRO A 49 ? ? -47.73 165.86 69 10 ASN A 51 ? ? -113.79 79.70 70 10 ASP A 76 ? ? -83.05 -70.73 71 10 LYS A 81 ? ? -68.61 -71.78 72 10 ALA A 115 ? ? -59.12 100.05 73 11 SER A 31 ? ? -172.57 144.27 74 11 LYS A 33 ? ? -48.83 171.64 75 11 GLU A 34 ? ? -110.32 78.46 76 11 ASN A 47 ? ? 74.06 40.72 77 11 PRO A 49 ? ? -49.39 164.24 78 11 ASN A 51 ? ? -106.31 74.83 79 11 ARG A 67 ? ? -91.83 -60.96 80 11 ASP A 76 ? ? -92.56 -68.26 81 11 ASP A 78 ? ? 72.78 40.20 82 11 ASP A 89 ? ? -97.09 -68.86 83 11 ASP A 101 ? ? -67.50 90.11 84 12 SER A 28 ? ? -173.11 120.00 85 12 ASN A 51 ? ? -110.39 73.14 86 12 ASP A 76 ? ? -89.13 -70.27 87 13 LYS A 33 ? ? -38.55 145.64 88 13 ASN A 51 ? ? -113.28 67.29 89 13 PHE A 80 ? ? -44.24 103.98 90 13 ASP A 101 ? ? -77.64 47.15 91 13 SER A 126 ? ? -69.56 87.16 92 14 GLU A 38 ? ? -173.55 139.01 93 14 PRO A 40 ? ? -69.74 -179.88 94 14 ASN A 47 ? ? 70.74 42.16 95 14 PRO A 49 ? ? -46.33 153.38 96 14 ASN A 51 ? ? -104.86 74.30 97 14 ASP A 74 ? ? -53.37 174.26 98 14 ASP A 76 ? ? -108.68 -64.09 99 14 ASP A 101 ? ? -58.35 90.51 100 14 ALA A 115 ? ? -61.59 88.59 101 14 ASP A 121 ? ? -168.75 117.83 102 15 GLU A 34 ? ? -55.60 107.68 103 15 ASN A 47 ? ? 73.04 41.38 104 15 PRO A 49 ? ? -45.50 157.43 105 15 ASP A 89 ? ? -69.55 -70.17 106 15 LYS A 95 ? ? -39.47 -34.32 107 15 ASP A 101 ? ? -60.01 98.12 108 15 ALA A 115 ? ? -60.40 95.85 109 15 PRO A 125 ? ? -48.67 171.31 110 16 ASN A 47 ? ? 70.52 45.34 111 16 PRO A 49 ? ? -48.81 164.72 112 16 ASN A 51 ? ? -82.10 49.23 113 16 SER A 68 ? ? -174.36 148.83 114 16 ASP A 89 ? ? -92.58 -65.86 115 16 ALA A 115 ? ? -119.26 50.98 116 16 SER A 123 ? ? -171.45 143.31 117 17 SER A 27 ? ? 34.45 50.01 118 17 LYS A 33 ? ? -56.99 178.46 119 17 PRO A 40 ? ? -69.75 -179.16 120 17 PRO A 49 ? ? -47.11 155.26 121 17 ASN A 51 ? ? -118.04 76.65 122 17 ASP A 101 ? ? -81.76 48.36 123 17 ALA A 103 ? ? -51.10 174.04 124 17 GLU A 116 ? ? -99.51 47.18 125 18 GLU A 34 ? ? -43.63 160.15 126 18 PRO A 40 ? ? -69.76 -179.03 127 18 ASN A 47 ? ? 74.07 43.80 128 18 PRO A 49 ? ? -49.21 164.75 129 18 ASN A 51 ? ? -89.41 48.07 130 18 ASP A 78 ? ? 37.44 52.43 131 18 ASP A 101 ? ? -58.38 92.97 132 18 GLU A 116 ? ? -44.01 153.68 133 19 LYS A 33 ? ? -53.89 108.91 134 19 GLU A 34 ? ? -35.07 136.76 135 19 ASN A 47 ? ? 70.19 48.65 136 19 PRO A 49 ? ? -49.03 159.16 137 19 ASP A 74 ? ? -56.60 -175.81 138 19 GLU A 116 ? ? -44.94 152.80 139 19 ARG A 118 ? ? -43.54 167.60 140 20 THR A 37 ? ? -99.80 38.27 141 20 GLU A 38 ? ? -175.13 140.98 142 20 PRO A 49 ? ? -48.48 155.65 143 20 SER A 68 ? ? -173.92 140.91 144 20 ASP A 74 ? ? -57.75 172.47 145 20 ASP A 76 ? ? -87.25 -74.86 146 20 ASP A 101 ? ? -59.39 95.77 #