HEADER RNA BINDING PROTEIN 26-APR-06 2DNH TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN BRUNO-LIKE 5 RNA BINDING TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRUNO-LIKE 5, RNA BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRUNOL5; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050725-22; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNH 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNH 1 VERSN REVDAT 1 26-OCT-06 2DNH 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN BRUNO-LIKE 5 RNA JRNL TITL 2 BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025621. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM 13C-15N PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 120 107.81 -39.71 REMARK 500 1 ARG A 134 30.35 -88.86 REMARK 500 1 PRO A 156 -17.18 -47.89 REMARK 500 1 ALA A 190 -37.17 -39.73 REMARK 500 1 ILE A 191 -72.91 -63.90 REMARK 500 1 MET A 200 138.45 -39.43 REMARK 500 1 THR A 214 -73.82 -59.04 REMARK 500 2 ARG A 132 70.09 -113.49 REMARK 500 2 LYS A 143 45.43 -78.45 REMARK 500 2 GLN A 144 -34.01 -132.11 REMARK 500 2 PRO A 156 -17.49 -47.95 REMARK 500 2 SER A 172 102.70 -35.66 REMARK 500 2 ALA A 190 -27.59 -38.65 REMARK 500 2 ILE A 191 -71.07 -74.30 REMARK 500 2 ASP A 213 141.48 -39.28 REMARK 500 2 ASP A 215 119.72 -168.39 REMARK 500 2 SER A 218 158.28 -41.48 REMARK 500 3 PRO A 156 -16.77 -47.92 REMARK 500 3 LEU A 207 151.57 -40.04 REMARK 500 4 PRO A 156 -17.08 -47.97 REMARK 500 4 ALA A 190 -38.77 -35.56 REMARK 500 4 ILE A 191 -73.00 -62.74 REMARK 500 4 PRO A 201 153.03 -48.62 REMARK 500 4 PHE A 211 157.36 -47.68 REMARK 500 4 ASP A 213 128.52 -36.94 REMARK 500 4 PRO A 220 98.67 -45.22 REMARK 500 4 SER A 221 126.22 -174.40 REMARK 500 5 SER A 124 42.31 -99.52 REMARK 500 5 GLU A 127 43.15 -83.14 REMARK 500 5 ASP A 133 117.37 -162.29 REMARK 500 5 LYS A 143 44.65 -79.49 REMARK 500 5 GLN A 144 -40.75 -133.01 REMARK 500 5 SER A 173 135.21 -34.62 REMARK 500 5 ALA A 190 -33.58 -35.57 REMARK 500 5 ILE A 191 -70.37 -66.62 REMARK 500 5 PRO A 201 153.05 -47.97 REMARK 500 5 LEU A 207 154.32 -42.31 REMARK 500 6 SER A 128 97.89 -62.59 REMARK 500 6 ASP A 133 159.51 -48.83 REMARK 500 6 PRO A 156 -17.13 -47.98 REMARK 500 6 ASP A 170 42.11 -82.74 REMARK 500 6 SER A 173 117.35 -35.28 REMARK 500 6 ILE A 191 -71.52 -65.89 REMARK 500 6 MET A 200 139.13 -39.92 REMARK 500 6 PRO A 201 150.49 -48.21 REMARK 500 6 PHE A 211 153.28 -47.39 REMARK 500 6 PRO A 220 169.38 -45.61 REMARK 500 7 SER A 120 148.22 -171.63 REMARK 500 7 SER A 121 118.99 -162.16 REMARK 500 7 GLU A 127 82.10 -65.66 REMARK 500 REMARK 500 THIS ENTRY HAS 167 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000660.1 RELATED DB: TARGETDB DBREF 2DNH A 126 217 UNP Q86VW6 Q86VW6_HUMAN 126 217 SEQADV 2DNH GLY A 119 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 120 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 121 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 122 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 123 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 124 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 125 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 218 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 219 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH PRO A 220 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 221 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH SER A 222 UNP Q86VW6 CLONING ARTIFACT SEQADV 2DNH GLY A 223 UNP Q86VW6 CLONING ARTIFACT SEQRES 1 A 105 GLY SER SER GLY SER SER GLY SER GLU SER ARG GLY GLY SEQRES 2 A 105 ARG ASP ARG LYS LEU PHE VAL GLY MET LEU ASN LYS GLN SEQRES 3 A 105 GLN SER GLU GLU ASP VAL LEU ARG LEU PHE GLN PRO PHE SEQRES 4 A 105 GLY VAL ILE ASP GLU CYS THR VAL LEU ARG GLY PRO ASP SEQRES 5 A 105 GLY SER SER LYS GLY CYS ALA PHE VAL LYS PHE SER SER SEQRES 6 A 105 HIS THR GLU ALA GLN ALA ALA ILE HIS ALA LEU HIS GLY SEQRES 7 A 105 SER GLN THR MET PRO GLY ALA SER SER SER LEU VAL VAL SEQRES 8 A 105 LYS PHE ALA ASP THR ASP LYS GLU SER GLY PRO SER SER SEQRES 9 A 105 GLY HELIX 1 1 SER A 146 GLN A 155 1 10 HELIX 2 2 SER A 183 HIS A 195 1 13 SHEET 1 A 4 ILE A 160 ARG A 167 0 SHEET 2 A 4 SER A 173 PHE A 181 -1 O PHE A 178 N THR A 164 SHEET 3 A 4 LYS A 135 GLY A 139 -1 N VAL A 138 O ALA A 177 SHEET 4 A 4 VAL A 208 PHE A 211 -1 O LYS A 210 N PHE A 137 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1