HEADER HYDROLASE/DNA 21-OCT-86 2DNJ TITLE DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A DNASE I- TITLE 2 OCTAMER COMPLEX CAVEAT 2DNJ NAG A 1000 HAS WRONG CHIRALITY AT ATOM C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*CP*GP*AP*TP*C)-3'; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DEOXYRIBONUCLEASE I; COMPND 11 CHAIN: A; COMPND 12 EC: 3.1.21.1 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 7 ORGANISM_COMMON: CATTLE; SOURCE 8 ORGANISM_TAXID: 9913; SOURCE 9 ORGAN: PANCREAS; SOURCE 10 SECRETION: MILK KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.LAHM,D.SUCK REVDAT 6 21-OCT-20 2DNJ 1 CAVEAT COMPND HET HETNAM REVDAT 6 2 1 HETSYN LINK ATOM REVDAT 5 29-JUL-20 2DNJ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 29-NOV-17 2DNJ 1 HELIX REVDAT 3 24-FEB-09 2DNJ 1 VERSN REVDAT 2 01-APR-03 2DNJ 1 JRNL REVDAT 1 31-JAN-94 2DNJ 0 JRNL AUTH A.LAHM,D.SUCK JRNL TITL DNASE I-INDUCED DNA CONFORMATION. 2 A STRUCTURE OF A DNASE JRNL TITL 2 I-OCTAMER COMPLEX JRNL REF J.MOL.BIOL. V. 222 645 1991 JRNL REFN ISSN 0022-2836 JRNL PMID 1748997 JRNL DOI 10.1016/0022-2836(91)90502-W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.SUCK,A.LAHM,C.OEFNER REMARK 1 TITL STRUCTURE REFINED TO 2 ANGSTROMS OF A NICKED DNA REMARK 1 TITL 2 OCTANUCLEOTIDE COMPLEX WITH DNASE I REMARK 1 REF NATURE V. 332 465 1988 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.SUCK,C.OEFNER REMARK 1 TITL STRUCTURE OF DNASE I AT 2.0 ANGSTROMS RESOLUTION SUGGESTS A REMARK 1 TITL 2 MECHANISM FOR BINDING TO AND CUTTING DNA REMARK 1 REF NATURE V. 321 620 1986 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.SUCK,C.OEFNER,W.KABSCH REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF BOVINE PANCREATIC DNASE I AT REMARK 1 TITL 2 2.5 ANGSTROMS RESOLUTION REMARK 1 REF EMBO J. V. 3 2423 1984 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.SUCK REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC DATA OF REMARK 1 TITL 2 BOVINE PANCREATIC DEOXYRIBONUCLEASE I REMARK 1 REF J.MOL.BIOL. V. 162 511 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 5 REMARK 1 AUTH T.-H.LIAO,J.SALNIKOW,S.MOORE,W.H.STEIN REMARK 1 TITL BOVINE PANCREATIC DEOXYRIBONUCLEASE A. ISOLATION OF CYANOGEN REMARK 1 TITL 2 BROMIDE PEPTIDES, COMPLETE COVALENT STRUCTURE OF THE REMARK 1 TITL 3 POLYPEPTIDE CHAIN REMARK 1 REF J.BIOL.CHEM. V. 248 1489 1973 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 20101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2006 REMARK 3 NUCLEIC ACID ATOMS : 281 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.031 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.029 ; 0.030 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.018 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.184 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.160 ; 0.200 REMARK 3 MULTIPLE TORSION (A) : 0.230 ; 0.200 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.200 ; 0.200 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.200 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 15.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.250 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.400 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.000 ; 4.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000178007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 273.00 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : OSCILLATION CAMERA REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION, TEMPERATURE REMARK 280 277.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.30000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.45000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.30000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.45000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE DNASE I MOLECULE AND REMARK 300 ONE NICKED DNA OCTAMER WITH A TOTAL OF 14 NUICLEOTIDES. REMARK 300 THE CLEAVED 3-PRIME GC OF ONE OF THE DNA STRANDS IS MISSING REMARK 300 IN THE STRUCTURE. THE SYMMETRY OPERATION X,1-Y,1-Z, I.E. REMARK 300 THE TWOFOLD AXIS ALONG A AT B/2,C/2, CREATES THE REMARK 300 QUASI-CONTINUOUS 14-MER FORMED BY THE TWO OVERLAPPING NICKE REMARK 300 OCTAMERS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 100.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 92.60000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 100 REMARK 465 CYS A 101 REMARK 465 GLU A 102 REMARK 465 SER A 103 REMARK 465 CYS A 104 REMARK 465 GLY A 105 REMARK 465 ASN A 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 301 C3' DG B 301 C2' 0.087 REMARK 500 DG B 301 C2' DG B 301 C1' 0.067 REMARK 500 DC B 302 P DC B 302 O5' 0.075 REMARK 500 DG B 303 P DG B 303 O5' 0.069 REMARK 500 DG B 303 C5' DG B 303 C4' 0.058 REMARK 500 DG B 303 C2' DG B 303 C1' 0.070 REMARK 500 DA B 304 P DA B 304 O5' 0.088 REMARK 500 DG B 307 P DG B 307 O5' 0.086 REMARK 500 DG B 307 C2' DG B 307 C1' 0.079 REMARK 500 DC B 308 P DC B 308 O5' 0.068 REMARK 500 DC B 308 C3' DC B 308 C2' 0.081 REMARK 500 DC B 308 C2' DC B 308 C1' 0.083 REMARK 500 DC C 310 P DC C 310 O5' 0.083 REMARK 500 DC C 310 C2' DC C 310 C1' 0.082 REMARK 500 DC C 310 O3' DG C 311 P -0.084 REMARK 500 DG C 311 P DG C 311 O5' 0.098 REMARK 500 DG C 311 O3' DG C 311 C3' -0.037 REMARK 500 DA C 312 P DA C 312 O5' 0.113 REMARK 500 DT C 313 P DT C 313 O5' 0.077 REMARK 500 DC C 314 P DC C 314 O5' 0.069 REMARK 500 DC C 314 C2' DC C 314 C1' 0.069 REMARK 500 THR A 260 C THR A 260 OXT 0.200 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 301 C3' - C2' - C1' ANGL. DEV. = -10.4 DEGREES REMARK 500 DG B 301 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG B 301 N7 - C8 - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG B 301 C8 - N9 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG B 301 N9 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC B 302 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC B 302 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DC B 302 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DG B 303 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG B 303 O4' - C1' - C2' ANGL. DEV. = 4.3 DEGREES REMARK 500 DG B 303 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA B 304 O4' - C1' - C2' ANGL. DEV. = 4.8 DEGREES REMARK 500 DT B 305 O5' - C5' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DT B 305 N3 - C2 - O2 ANGL. DEV. = -4.1 DEGREES REMARK 500 DT B 305 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DG B 307 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DG B 307 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG B 307 N7 - C8 - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG B 307 C8 - N9 - C4 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG B 307 C8 - N9 - C1' ANGL. DEV. = 8.8 DEGREES REMARK 500 DC B 308 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC B 308 C3' - C2' - C1' ANGL. DEV. = -12.0 DEGREES REMARK 500 DC B 308 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC B 308 N1 - C2 - O2 ANGL. DEV. = -6.9 DEGREES REMARK 500 DC B 308 N3 - C2 - O2 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC B 308 C6 - N1 - C1' ANGL. DEV. = 8.5 DEGREES REMARK 500 DC B 308 C2 - N1 - C1' ANGL. DEV. = -7.5 DEGREES REMARK 500 DG C 309 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG C 309 C4' - C3' - C2' ANGL. DEV. = 5.6 DEGREES REMARK 500 DG C 309 O4' - C1' - C2' ANGL. DEV. = 6.6 DEGREES REMARK 500 DG C 309 N3 - C4 - N9 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG C 309 N1 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG C 309 C5 - C6 - O6 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG C 309 C8 - N9 - C1' ANGL. DEV. = 8.7 DEGREES REMARK 500 DC C 310 C4' - C3' - O3' ANGL. DEV. = 13.9 DEGREES REMARK 500 DC C 310 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC C 310 C6 - N1 - C2 ANGL. DEV. = -2.8 DEGREES REMARK 500 DC C 310 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC C 310 C3' - O3' - P ANGL. DEV. = 18.4 DEGREES REMARK 500 DG C 311 O3' - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 DG C 311 O5' - C5' - C4' ANGL. DEV. = -8.3 DEGREES REMARK 500 DG C 311 P - O5' - C5' ANGL. DEV. = -9.8 DEGREES REMARK 500 DG C 311 C3' - O3' - P ANGL. DEV. = 14.8 DEGREES REMARK 500 DA C 312 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DA C 312 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DT C 313 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 313 O4' - C1' - C2' ANGL. DEV. = 4.4 DEGREES REMARK 500 DT C 313 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 314 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 64 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 39 33.90 70.74 REMARK 500 ASP A 42 81.48 -150.30 REMARK 500 ASN A 74 -144.92 -116.61 REMARK 500 ALA A 171 44.93 -83.27 REMARK 500 ASP A 172 -177.46 -171.81 REMARK 500 CYS A 173 -128.84 49.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 OF THE CARBOHYDRATE MOIETY ATTACHED TO ND2 ASN 18, ONLY THE REMARK 600 FIRST RESIDUE WAS VISIBLE IN THE ELECTRON DENSITY MAP AND REMARK 600 IS INCLUDED IN THE ENTRY. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 2DNJ A 1 260 UNP P00639 DNAS1_BOVIN 23 282 DBREF 2DNJ B 301 308 PDB 2DNJ 2DNJ 301 308 DBREF 2DNJ C 309 314 PDB 2DNJ 2DNJ 309 314 SEQRES 1 B 8 DG DC DG DA DT DC DG DC SEQRES 1 C 6 DG DC DG DA DT DC SEQRES 1 A 260 LEU LYS ILE ALA ALA PHE ASN ILE ARG THR PHE GLY GLU SEQRES 2 A 260 THR LYS MET SER ASN ALA THR LEU ALA SER TYR ILE VAL SEQRES 3 A 260 ARG ILE VAL ARG ARG TYR ASP ILE VAL LEU ILE GLN GLU SEQRES 4 A 260 VAL ARG ASP SER HIS LEU VAL ALA VAL GLY LYS LEU LEU SEQRES 5 A 260 ASP TYR LEU ASN GLN ASP ASP PRO ASN THR TYR HIS TYR SEQRES 6 A 260 VAL VAL SER GLU PRO LEU GLY ARG ASN SER TYR LYS GLU SEQRES 7 A 260 ARG TYR LEU PHE LEU PHE ARG PRO ASN LYS VAL SER VAL SEQRES 8 A 260 LEU ASP THR TYR GLN TYR ASP ASP GLY CYS GLU SER CYS SEQRES 9 A 260 GLY ASN ASP SER PHE SER ARG GLU PRO ALA VAL VAL LYS SEQRES 10 A 260 PHE SER SER HIS SER THR LYS VAL LYS GLU PHE ALA ILE SEQRES 11 A 260 VAL ALA LEU HIS SER ALA PRO SER ASP ALA VAL ALA GLU SEQRES 12 A 260 ILE ASN SER LEU TYR ASP VAL TYR LEU ASP VAL GLN GLN SEQRES 13 A 260 LYS TRP HIS LEU ASN ASP VAL MET LEU MET GLY ASP PHE SEQRES 14 A 260 ASN ALA ASP CYS SER TYR VAL THR SER SER GLN TRP SER SEQRES 15 A 260 SER ILE ARG LEU ARG THR SER SER THR PHE GLN TRP LEU SEQRES 16 A 260 ILE PRO ASP SER ALA ASP THR THR ALA THR SER THR ASN SEQRES 17 A 260 CYS ALA TYR ASP ARG ILE VAL VAL ALA GLY SER LEU LEU SEQRES 18 A 260 GLN SER SER VAL VAL PRO GLY SER ALA ALA PRO PHE ASP SEQRES 19 A 260 PHE GLN ALA ALA TYR GLY LEU SER ASN GLU MET ALA LEU SEQRES 20 A 260 ALA ILE SER ASP HIS TYR PRO VAL GLU VAL THR LEU THR MODRES 2DNJ ASN A 18 ASN GLYCOSYLATION SITE HET NAG A1000 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *252(H2 O) HELIX 1 H1 GLU A 13 MET A 16 1 4 HELIX 2 H2 ALA A 19 ARG A 30 1 12 HELIX 3 H3 VAL A 46 LEU A 55 1 10 HELIX 4 H4A ASP A 139 LEU A 147 1 9 HELIX 5 H4B TYR A 148 TRP A 158 1CONTIGUOUS WITH HELIX H4A 11 HELIX 6 H5 ARG A 185 THR A 188 1 4 HELIX 7 H6 SER A 219 SER A 224 1 6 HELIX 8 H7 PHE A 235 ALA A 238 1 4 HELIX 9 H8 ASN A 243 ILE A 249 1 7 SHEET 1 S1 6 ALA A 231 PRO A 232 0 SHEET 2 S1 6 VAL A 255 LEU A 259 -1 O GLU A 256 N ALA A 231 SHEET 3 S1 6 LYS A 2 PHE A 11 -1 O ALA A 5 N VAL A 255 SHEET 4 S1 6 ILE A 34 VAL A 40 1 O LEU A 36 N PHE A 6 SHEET 5 S1 6 ARG A 79 PHE A 84 -1 O LEU A 81 N ILE A 37 SHEET 6 S1 6 HIS A 64 VAL A 67 -1 O VAL A 66 N PHE A 82 SHEET 1 S2 6 VAL A 89 GLN A 96 0 SHEET 2 S2 6 ALA A 114 SER A 120 -1 O VAL A 115 N TYR A 95 SHEET 3 S2 6 LYS A 126 ALA A 132 -1 O ILE A 130 N VAL A 116 SHEET 4 S2 6 VAL A 163 ASP A 168 1 O MET A 166 N VAL A 131 SHEET 5 S2 6 ASP A 212 ALA A 217 -1 O VAL A 215 N LEU A 165 SHEET 6 S2 6 GLN A 193 TRP A 194 -1 O GLN A 193 N VAL A 216 SSBOND 1 CYS A 173 CYS A 209 1555 1555 2.06 LINK ND2 ASN A 18 C1 NAG A1000 1555 1555 1.49 SITE 1 ACT 5 GLU A 39 GLU A 78 HIS A 134 ASP A 212 SITE 2 ACT 5 HIS A 252 CRYST1 72.900 100.100 92.600 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010799 0.00000