data_2DNK # _entry.id 2DNK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNK pdb_00002dnk 10.2210/pdb2dnk/pdb RCSB RCSB025622 ? ? WWPDB D_1000025622 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNK _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002003720.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of RNA binding domain in Bruno-like 4 RNA binding protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Bruno-like 4, RNA binding protein' _entity.formula_weight 11045.224 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQ TMPGASSSLVVKFADTDKESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQ TMPGASSSLVVKFADTDKESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002003720.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 CYS n 1 9 LEU n 1 10 ARG n 1 11 GLN n 1 12 PRO n 1 13 PRO n 1 14 SER n 1 15 HIS n 1 16 ARG n 1 17 LYS n 1 18 LEU n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 MET n 1 23 LEU n 1 24 ASN n 1 25 LYS n 1 26 GLN n 1 27 GLN n 1 28 SER n 1 29 GLU n 1 30 ASP n 1 31 ASP n 1 32 VAL n 1 33 ARG n 1 34 ARG n 1 35 LEU n 1 36 PHE n 1 37 GLU n 1 38 ALA n 1 39 PHE n 1 40 GLY n 1 41 ASN n 1 42 ILE n 1 43 GLU n 1 44 GLU n 1 45 CYS n 1 46 THR n 1 47 ILE n 1 48 LEU n 1 49 ARG n 1 50 GLY n 1 51 PRO n 1 52 ASP n 1 53 GLY n 1 54 ASN n 1 55 SER n 1 56 LYS n 1 57 GLY n 1 58 CYS n 1 59 ALA n 1 60 PHE n 1 61 VAL n 1 62 LYS n 1 63 TYR n 1 64 SER n 1 65 SER n 1 66 HIS n 1 67 ALA n 1 68 GLU n 1 69 ALA n 1 70 GLN n 1 71 ALA n 1 72 ALA n 1 73 ILE n 1 74 ASN n 1 75 ALA n 1 76 LEU n 1 77 HIS n 1 78 GLY n 1 79 SER n 1 80 GLN n 1 81 THR n 1 82 MET n 1 83 PRO n 1 84 GLY n 1 85 ALA n 1 86 SER n 1 87 SER n 1 88 SER n 1 89 LEU n 1 90 VAL n 1 91 VAL n 1 92 LYS n 1 93 PHE n 1 94 ALA n 1 95 ASP n 1 96 THR n 1 97 ASP n 1 98 LYS n 1 99 GLU n 1 100 SER n 1 101 GLY n 1 102 PRO n 1 103 SER n 1 104 SER n 1 105 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene Brunol4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050815-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 136 136 GLY GLY A . n A 1 2 SER 2 137 137 SER SER A . n A 1 3 SER 3 138 138 SER SER A . n A 1 4 GLY 4 139 139 GLY GLY A . n A 1 5 SER 5 140 140 SER SER A . n A 1 6 SER 6 141 141 SER SER A . n A 1 7 GLY 7 142 142 GLY GLY A . n A 1 8 CYS 8 143 143 CYS CYS A . n A 1 9 LEU 9 144 144 LEU LEU A . n A 1 10 ARG 10 145 145 ARG ARG A . n A 1 11 GLN 11 146 146 GLN GLN A . n A 1 12 PRO 12 147 147 PRO PRO A . n A 1 13 PRO 13 148 148 PRO PRO A . n A 1 14 SER 14 149 149 SER SER A . n A 1 15 HIS 15 150 150 HIS HIS A . n A 1 16 ARG 16 151 151 ARG ARG A . n A 1 17 LYS 17 152 152 LYS LYS A . n A 1 18 LEU 18 153 153 LEU LEU A . n A 1 19 PHE 19 154 154 PHE PHE A . n A 1 20 VAL 20 155 155 VAL VAL A . n A 1 21 GLY 21 156 156 GLY GLY A . n A 1 22 MET 22 157 157 MET MET A . n A 1 23 LEU 23 158 158 LEU LEU A . n A 1 24 ASN 24 159 159 ASN ASN A . n A 1 25 LYS 25 160 160 LYS LYS A . n A 1 26 GLN 26 161 161 GLN GLN A . n A 1 27 GLN 27 162 162 GLN GLN A . n A 1 28 SER 28 163 163 SER SER A . n A 1 29 GLU 29 164 164 GLU GLU A . n A 1 30 ASP 30 165 165 ASP ASP A . n A 1 31 ASP 31 166 166 ASP ASP A . n A 1 32 VAL 32 167 167 VAL VAL A . n A 1 33 ARG 33 168 168 ARG ARG A . n A 1 34 ARG 34 169 169 ARG ARG A . n A 1 35 LEU 35 170 170 LEU LEU A . n A 1 36 PHE 36 171 171 PHE PHE A . n A 1 37 GLU 37 172 172 GLU GLU A . n A 1 38 ALA 38 173 173 ALA ALA A . n A 1 39 PHE 39 174 174 PHE PHE A . n A 1 40 GLY 40 175 175 GLY GLY A . n A 1 41 ASN 41 176 176 ASN ASN A . n A 1 42 ILE 42 177 177 ILE ILE A . n A 1 43 GLU 43 178 178 GLU GLU A . n A 1 44 GLU 44 179 179 GLU GLU A . n A 1 45 CYS 45 180 180 CYS CYS A . n A 1 46 THR 46 181 181 THR THR A . n A 1 47 ILE 47 182 182 ILE ILE A . n A 1 48 LEU 48 183 183 LEU LEU A . n A 1 49 ARG 49 184 184 ARG ARG A . n A 1 50 GLY 50 185 185 GLY GLY A . n A 1 51 PRO 51 186 186 PRO PRO A . n A 1 52 ASP 52 187 187 ASP ASP A . n A 1 53 GLY 53 188 188 GLY GLY A . n A 1 54 ASN 54 189 189 ASN ASN A . n A 1 55 SER 55 190 190 SER SER A . n A 1 56 LYS 56 191 191 LYS LYS A . n A 1 57 GLY 57 192 192 GLY GLY A . n A 1 58 CYS 58 193 193 CYS CYS A . n A 1 59 ALA 59 194 194 ALA ALA A . n A 1 60 PHE 60 195 195 PHE PHE A . n A 1 61 VAL 61 196 196 VAL VAL A . n A 1 62 LYS 62 197 197 LYS LYS A . n A 1 63 TYR 63 198 198 TYR TYR A . n A 1 64 SER 64 199 199 SER SER A . n A 1 65 SER 65 200 200 SER SER A . n A 1 66 HIS 66 201 201 HIS HIS A . n A 1 67 ALA 67 202 202 ALA ALA A . n A 1 68 GLU 68 203 203 GLU GLU A . n A 1 69 ALA 69 204 204 ALA ALA A . n A 1 70 GLN 70 205 205 GLN GLN A . n A 1 71 ALA 71 206 206 ALA ALA A . n A 1 72 ALA 72 207 207 ALA ALA A . n A 1 73 ILE 73 208 208 ILE ILE A . n A 1 74 ASN 74 209 209 ASN ASN A . n A 1 75 ALA 75 210 210 ALA ALA A . n A 1 76 LEU 76 211 211 LEU LEU A . n A 1 77 HIS 77 212 212 HIS HIS A . n A 1 78 GLY 78 213 213 GLY GLY A . n A 1 79 SER 79 214 214 SER SER A . n A 1 80 GLN 80 215 215 GLN GLN A . n A 1 81 THR 81 216 216 THR THR A . n A 1 82 MET 82 217 217 MET MET A . n A 1 83 PRO 83 218 218 PRO PRO A . n A 1 84 GLY 84 219 219 GLY GLY A . n A 1 85 ALA 85 220 220 ALA ALA A . n A 1 86 SER 86 221 221 SER SER A . n A 1 87 SER 87 222 222 SER SER A . n A 1 88 SER 88 223 223 SER SER A . n A 1 89 LEU 89 224 224 LEU LEU A . n A 1 90 VAL 90 225 225 VAL VAL A . n A 1 91 VAL 91 226 226 VAL VAL A . n A 1 92 LYS 92 227 227 LYS LYS A . n A 1 93 PHE 93 228 228 PHE PHE A . n A 1 94 ALA 94 229 229 ALA ALA A . n A 1 95 ASP 95 230 230 ASP ASP A . n A 1 96 THR 96 231 231 THR THR A . n A 1 97 ASP 97 232 232 ASP ASP A . n A 1 98 LYS 98 233 233 LYS LYS A . n A 1 99 GLU 99 234 234 GLU GLU A . n A 1 100 SER 100 235 235 SER SER A . n A 1 101 GLY 101 236 236 GLY GLY A . n A 1 102 PRO 102 237 237 PRO PRO A . n A 1 103 SER 103 238 238 SER SER A . n A 1 104 SER 104 239 239 SER SER A . n A 1 105 GLY 105 240 240 GLY GLY A . n # _exptl.entry_id 2DNK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2DNK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2DNK _struct.title 'Solution structure of RNA binding domain in Bruno-like 4 RNA binding protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNK _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9BQ96_HUMAN _struct_ref.pdbx_db_accession Q9BQ96 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 137 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 99 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BQ96 _struct_ref_seq.db_align_beg 137 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 234 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 143 _struct_ref_seq.pdbx_auth_seq_align_end 234 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNK GLY A 1 ? UNP Q9BQ96 ? ? 'cloning artifact' 136 1 1 2DNK SER A 2 ? UNP Q9BQ96 ? ? 'cloning artifact' 137 2 1 2DNK SER A 3 ? UNP Q9BQ96 ? ? 'cloning artifact' 138 3 1 2DNK GLY A 4 ? UNP Q9BQ96 ? ? 'cloning artifact' 139 4 1 2DNK SER A 5 ? UNP Q9BQ96 ? ? 'cloning artifact' 140 5 1 2DNK SER A 6 ? UNP Q9BQ96 ? ? 'cloning artifact' 141 6 1 2DNK GLY A 7 ? UNP Q9BQ96 ? ? 'cloning artifact' 142 7 1 2DNK SER A 100 ? UNP Q9BQ96 ? ? 'cloning artifact' 235 8 1 2DNK GLY A 101 ? UNP Q9BQ96 ? ? 'cloning artifact' 236 9 1 2DNK PRO A 102 ? UNP Q9BQ96 ? ? 'cloning artifact' 237 10 1 2DNK SER A 103 ? UNP Q9BQ96 ? ? 'cloning artifact' 238 11 1 2DNK SER A 104 ? UNP Q9BQ96 ? ? 'cloning artifact' 239 12 1 2DNK GLY A 105 ? UNP Q9BQ96 ? ? 'cloning artifact' 240 13 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 28 ? ALA A 38 ? SER A 163 ALA A 173 1 ? 11 HELX_P HELX_P2 2 SER A 65 ? HIS A 77 ? SER A 200 HIS A 212 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 42 ? ARG A 49 ? ILE A 177 ARG A 184 A 2 SER A 55 ? TYR A 63 ? SER A 190 TYR A 198 A 3 LYS A 17 ? GLY A 21 ? LYS A 152 GLY A 156 A 4 VAL A 90 ? PHE A 93 ? VAL A 225 PHE A 228 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 46 ? N THR A 181 O PHE A 60 ? O PHE A 195 A 2 3 O ALA A 59 ? O ALA A 194 N VAL A 20 ? N VAL A 155 A 3 4 N PHE A 19 ? N PHE A 154 O LYS A 92 ? O LYS A 227 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 145 ? ? 37.21 35.83 2 1 PRO A 147 ? ? -46.60 157.59 3 1 HIS A 150 ? ? -171.40 129.06 4 1 LYS A 160 ? ? -84.13 41.34 5 1 PHE A 171 ? ? -53.37 -72.21 6 1 PHE A 174 ? ? -105.42 -74.34 7 1 ASN A 176 ? ? -48.49 153.34 8 1 SER A 190 ? ? -36.59 137.75 9 1 LEU A 211 ? ? -113.88 -74.36 10 1 SER A 214 ? ? -88.55 -73.82 11 1 MET A 217 ? ? -39.99 137.66 12 1 SER A 238 ? ? -35.20 134.70 13 1 SER A 239 ? ? -65.88 89.87 14 2 SER A 137 ? ? 35.81 42.33 15 2 ARG A 145 ? ? -43.65 155.03 16 2 LYS A 160 ? ? -83.97 37.54 17 2 PHE A 171 ? ? -56.02 -73.30 18 2 GLU A 172 ? ? -39.18 -27.78 19 2 PHE A 174 ? ? -106.69 -70.73 20 2 LEU A 211 ? ? -102.50 -74.54 21 2 SER A 214 ? ? -93.34 -71.01 22 2 MET A 217 ? ? -39.26 160.05 23 2 LEU A 224 ? ? -38.71 152.92 24 2 ASP A 230 ? ? -82.41 46.07 25 2 THR A 231 ? ? 36.30 32.81 26 3 SER A 137 ? ? -98.19 -62.13 27 3 PRO A 148 ? ? -46.34 170.72 28 3 MET A 157 ? ? 38.59 30.50 29 3 LYS A 160 ? ? -88.16 33.46 30 3 GLN A 161 ? ? -123.84 -52.22 31 3 ALA A 173 ? ? -49.21 -19.05 32 3 PHE A 174 ? ? -112.52 -73.93 33 3 LYS A 191 ? ? -94.19 33.59 34 3 ILE A 208 ? ? -69.15 -73.27 35 3 LEU A 211 ? ? -100.51 -69.21 36 3 SER A 214 ? ? -85.94 -72.38 37 3 MET A 217 ? ? -38.74 138.81 38 3 LEU A 224 ? ? -34.61 148.80 39 4 PRO A 147 ? ? -45.77 163.74 40 4 PRO A 148 ? ? -45.64 171.86 41 4 LYS A 160 ? ? -84.98 36.66 42 4 GLN A 161 ? ? -123.09 -51.08 43 4 LYS A 191 ? ? -84.43 32.49 44 4 ILE A 208 ? ? -62.72 -75.00 45 4 LEU A 211 ? ? -109.44 -72.60 46 4 SER A 214 ? ? -91.45 -70.74 47 4 MET A 217 ? ? -37.40 156.88 48 4 PHE A 228 ? ? -43.49 150.19 49 5 LYS A 160 ? ? -83.50 39.47 50 5 PHE A 171 ? ? -52.22 -70.86 51 5 PHE A 174 ? ? -109.79 -74.91 52 5 ILE A 208 ? ? -61.44 -73.37 53 5 LEU A 211 ? ? -102.25 -72.05 54 5 SER A 214 ? ? -95.28 -71.09 55 5 SER A 238 ? ? 34.86 42.13 56 6 LYS A 160 ? ? -95.91 51.35 57 6 GLN A 161 ? ? -127.22 -52.19 58 6 PHE A 171 ? ? -55.92 -71.24 59 6 ASN A 176 ? ? -45.31 153.94 60 6 PRO A 186 ? ? -45.54 156.61 61 6 ILE A 208 ? ? -58.66 -72.28 62 6 LEU A 211 ? ? -101.47 -69.32 63 6 SER A 214 ? ? -95.93 -70.99 64 6 MET A 217 ? ? -38.17 158.18 65 6 LEU A 224 ? ? -47.80 154.39 66 6 SER A 235 ? ? -168.54 119.49 67 7 LEU A 144 ? ? -83.41 38.42 68 7 PRO A 147 ? ? -45.67 156.81 69 7 MET A 157 ? ? 38.69 43.95 70 7 PHE A 171 ? ? -52.20 -70.93 71 7 PHE A 174 ? ? -114.56 -70.24 72 7 ASN A 176 ? ? -44.23 164.79 73 7 PRO A 186 ? ? -45.66 157.05 74 7 ILE A 208 ? ? -65.07 -75.13 75 7 LEU A 211 ? ? -102.23 -70.19 76 7 SER A 214 ? ? -99.95 -70.23 77 7 MET A 217 ? ? -39.13 134.84 78 7 SER A 238 ? ? -162.78 115.87 79 8 PRO A 148 ? ? -46.91 178.51 80 8 MET A 157 ? ? 46.80 28.56 81 8 LYS A 160 ? ? -85.59 37.20 82 8 PHE A 171 ? ? -51.73 -72.19 83 8 PHE A 174 ? ? -112.21 -74.97 84 8 ASN A 189 ? ? -58.99 98.64 85 8 SER A 190 ? ? -35.30 145.49 86 8 ILE A 208 ? ? -64.25 -75.06 87 8 LEU A 211 ? ? -100.97 -65.79 88 8 SER A 214 ? ? -99.66 -67.91 89 8 MET A 217 ? ? -36.00 136.23 90 8 LEU A 224 ? ? -36.82 152.72 91 8 ASP A 230 ? ? -104.63 -66.99 92 8 SER A 235 ? ? -170.03 113.77 93 9 SER A 137 ? ? -96.02 55.51 94 9 SER A 138 ? ? -101.64 41.69 95 9 ARG A 151 ? ? -162.41 116.09 96 9 LYS A 160 ? ? -92.79 42.59 97 9 GLU A 172 ? ? -59.82 -9.94 98 9 PHE A 174 ? ? -120.43 -67.90 99 9 LEU A 211 ? ? -115.61 -75.00 100 9 SER A 214 ? ? -90.18 -71.61 101 9 SER A 223 ? ? -44.91 162.97 102 10 SER A 138 ? ? 39.97 42.15 103 10 SER A 140 ? ? -162.06 110.53 104 10 PRO A 147 ? ? -46.76 158.34 105 10 PRO A 148 ? ? -45.17 171.93 106 10 LYS A 160 ? ? -80.92 42.09 107 10 GLN A 161 ? ? -130.96 -43.03 108 10 ASN A 176 ? ? -40.74 162.03 109 10 PRO A 186 ? ? -45.46 153.51 110 10 SER A 190 ? ? -49.84 105.18 111 10 LYS A 191 ? ? -80.40 43.45 112 10 ILE A 208 ? ? -57.97 -74.06 113 10 LEU A 211 ? ? -104.53 -72.00 114 10 SER A 214 ? ? -87.97 -71.03 115 10 MET A 217 ? ? -34.73 133.58 116 10 LEU A 224 ? ? -37.22 153.16 117 10 PRO A 237 ? ? -78.61 37.40 118 11 SER A 137 ? ? -60.79 90.23 119 11 SER A 138 ? ? -50.85 107.20 120 11 SER A 141 ? ? -98.85 42.97 121 11 CYS A 143 ? ? -100.17 73.07 122 11 GLN A 146 ? ? -37.47 99.50 123 11 HIS A 150 ? ? 38.83 45.97 124 11 LYS A 160 ? ? -85.48 32.89 125 11 GLN A 161 ? ? -120.89 -50.51 126 11 GLN A 162 ? ? -44.31 159.82 127 11 PHE A 174 ? ? -118.30 -71.74 128 11 PRO A 186 ? ? -75.56 -167.32 129 11 LEU A 211 ? ? -100.73 -72.09 130 11 SER A 214 ? ? -96.88 -71.89 131 11 LEU A 224 ? ? -39.56 149.83 132 11 LYS A 233 ? ? -171.45 145.17 133 12 SER A 141 ? ? -172.53 134.28 134 12 LEU A 144 ? ? -97.60 40.82 135 12 HIS A 150 ? ? -69.78 -176.66 136 12 ARG A 151 ? ? -133.20 -38.89 137 12 GLN A 161 ? ? -134.88 -50.67 138 12 PRO A 186 ? ? -47.27 -17.72 139 12 ILE A 208 ? ? -67.41 -75.11 140 12 LEU A 211 ? ? -100.94 -69.57 141 12 SER A 214 ? ? -97.71 -74.43 142 12 MET A 217 ? ? -37.31 156.37 143 12 PHE A 228 ? ? -69.97 68.80 144 12 ALA A 229 ? ? 32.00 44.22 145 12 THR A 231 ? ? -161.97 105.17 146 12 ASP A 232 ? ? -40.20 93.64 147 13 PRO A 147 ? ? -45.61 166.92 148 13 PHE A 174 ? ? -111.77 -71.37 149 13 SER A 190 ? ? -35.91 119.60 150 13 LYS A 191 ? ? -90.82 36.16 151 13 LEU A 211 ? ? -102.51 -69.33 152 13 SER A 214 ? ? -94.43 -74.12 153 13 MET A 217 ? ? -37.08 134.45 154 13 ASP A 232 ? ? -170.92 129.38 155 13 PRO A 237 ? ? -76.99 44.10 156 14 CYS A 143 ? ? -91.77 52.92 157 14 GLN A 146 ? ? -36.09 143.59 158 14 SER A 149 ? ? 35.05 46.63 159 14 HIS A 150 ? ? -165.97 117.42 160 14 ARG A 151 ? ? -108.62 40.97 161 14 LYS A 160 ? ? -81.38 44.73 162 14 PHE A 171 ? ? -51.70 -72.06 163 14 ALA A 173 ? ? -39.62 -30.16 164 14 PHE A 174 ? ? -107.85 -68.83 165 14 LYS A 191 ? ? -89.70 47.21 166 14 ILE A 208 ? ? -51.12 -72.83 167 14 LEU A 211 ? ? -114.34 -73.85 168 14 SER A 214 ? ? -99.22 -69.27 169 14 MET A 217 ? ? -35.96 135.07 170 14 LEU A 224 ? ? -45.57 157.73 171 15 SER A 140 ? ? -36.86 116.43 172 15 PRO A 148 ? ? -43.83 102.46 173 15 SER A 149 ? ? -34.65 128.67 174 15 LYS A 160 ? ? -89.87 34.59 175 15 GLN A 162 ? ? -47.05 155.94 176 15 PHE A 171 ? ? -51.07 -70.39 177 15 PHE A 174 ? ? -106.46 -68.97 178 15 ASN A 176 ? ? -45.71 153.27 179 15 LYS A 191 ? ? -84.12 38.12 180 15 ILE A 208 ? ? -59.94 -72.60 181 15 LEU A 211 ? ? -101.92 -71.12 182 15 SER A 214 ? ? -96.65 -74.34 183 15 MET A 217 ? ? -39.27 135.08 184 15 LEU A 224 ? ? -47.81 152.51 185 15 THR A 231 ? ? -37.35 121.84 186 15 SER A 238 ? ? 39.42 41.45 187 15 SER A 239 ? ? -62.56 86.54 188 16 PRO A 148 ? ? -43.72 159.31 189 16 SER A 149 ? ? -92.36 -70.51 190 16 HIS A 150 ? ? -39.54 151.53 191 16 LYS A 160 ? ? -82.62 48.91 192 16 GLN A 161 ? ? -133.27 -49.49 193 16 ARG A 168 ? ? -35.23 -70.11 194 16 PHE A 171 ? ? -55.33 -72.84 195 16 GLU A 172 ? ? -39.55 -28.26 196 16 PHE A 174 ? ? -108.09 -69.92 197 16 ASN A 189 ? ? -37.14 135.67 198 16 LYS A 191 ? ? -89.68 31.55 199 16 ILE A 208 ? ? -49.54 -74.95 200 16 LEU A 211 ? ? -100.29 -68.93 201 16 SER A 214 ? ? -85.50 -73.08 202 16 MET A 217 ? ? -39.04 135.23 203 16 LEU A 224 ? ? -41.78 151.62 204 17 LYS A 160 ? ? -89.72 40.97 205 17 GLN A 161 ? ? -127.31 -53.17 206 17 PHE A 174 ? ? -116.14 -73.61 207 17 ASN A 189 ? ? -49.94 90.43 208 17 SER A 190 ? ? -36.14 141.93 209 17 LYS A 191 ? ? -94.71 39.87 210 17 ILE A 208 ? ? -59.23 -74.06 211 17 LEU A 211 ? ? -99.99 -67.69 212 17 SER A 214 ? ? -97.74 -66.55 213 17 MET A 217 ? ? -34.69 131.07 214 17 ALA A 229 ? ? -34.75 122.13 215 17 ASP A 230 ? ? -163.55 117.76 216 18 SER A 141 ? ? -104.03 42.80 217 18 LEU A 144 ? ? -43.83 158.65 218 18 SER A 149 ? ? -83.61 38.40 219 18 PHE A 171 ? ? -51.32 -71.85 220 18 PHE A 174 ? ? -113.96 -72.62 221 18 SER A 190 ? ? -39.04 131.76 222 18 ILE A 208 ? ? -59.72 -75.12 223 18 LEU A 211 ? ? -99.96 -69.08 224 18 SER A 214 ? ? -94.53 -71.29 225 18 MET A 217 ? ? -34.56 133.18 226 18 LEU A 224 ? ? -35.57 141.76 227 19 CYS A 143 ? ? -69.67 89.80 228 19 ARG A 145 ? ? -34.55 -39.28 229 19 GLN A 146 ? ? -172.05 143.70 230 19 PRO A 148 ? ? -46.99 162.13 231 19 ARG A 151 ? ? -106.86 42.90 232 19 MET A 157 ? ? 39.49 33.36 233 19 ALA A 173 ? ? -49.36 -19.45 234 19 PHE A 174 ? ? -113.48 -74.68 235 19 LYS A 191 ? ? -94.04 37.59 236 19 ILE A 208 ? ? -56.23 -70.28 237 19 LEU A 211 ? ? -112.35 -70.83 238 19 SER A 214 ? ? -90.15 -67.26 239 19 MET A 217 ? ? -37.37 132.65 240 19 LEU A 224 ? ? -49.35 156.09 241 20 SER A 140 ? ? -91.53 42.48 242 20 PRO A 148 ? ? -45.19 173.11 243 20 SER A 149 ? ? -94.40 41.16 244 20 MET A 157 ? ? 34.66 34.15 245 20 LYS A 160 ? ? -85.39 32.50 246 20 GLN A 161 ? ? -120.32 -54.38 247 20 PHE A 174 ? ? -123.12 -69.01 248 20 ILE A 208 ? ? -71.92 -71.57 249 20 LEU A 211 ? ? -99.93 -67.56 250 20 SER A 214 ? ? -96.38 -71.36 251 20 MET A 217 ? ? -36.39 136.18 252 20 LEU A 224 ? ? -38.31 158.08 253 20 THR A 231 ? ? 36.10 47.85 254 20 SER A 238 ? ? -164.43 111.22 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_nmr_ensemble.entry_id 2DNK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.81mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_refine.entry_id 2DNK _pdbx_nmr_refine.method 'torsion angle dynamics,restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.9742 Kobayashi,N 4 'structure solution' CYANA 2.0.17 Guntert,P 5 refinement CYANA 2.0.17 Guntert,P 6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 2DNK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_