HEADER TRANSLATION 26-APR-06 2DNL TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN CYTOPLASMIC TITLE 2 POLYADENYLATION ELEMENT BINDING PROTEIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CPEB3; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050719-10; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSLATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DNL 1 REMARK REVDAT 3 09-MAR-22 2DNL 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNL 1 VERSN REVDAT 1 26-OCT-06 2DNL 0 JRNL AUTH K.TSUDA,T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN CYTOPLASMIC JRNL TITL 2 POLYADENYLATION ELEMENT BINDING PROTEIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025623. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.06MM 13C-15N PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 420 140.54 -172.54 REMARK 500 1 LYS A 428 148.58 -37.52 REMARK 500 1 PRO A 435 150.30 -47.33 REMARK 500 1 GLU A 440 -73.77 -58.39 REMARK 500 1 HIS A 459 55.31 -119.11 REMARK 500 1 SER A 465 130.99 -36.43 REMARK 500 1 TYR A 466 41.79 -98.69 REMARK 500 1 PRO A 468 103.47 -45.54 REMARK 500 1 LYS A 470 26.70 41.08 REMARK 500 1 TYR A 472 141.86 -175.23 REMARK 500 1 THR A 505 -64.39 -109.89 REMARK 500 1 ASP A 508 100.37 -34.70 REMARK 500 1 PRO A 515 101.52 -46.44 REMARK 500 1 TRP A 516 122.00 -34.87 REMARK 500 2 GLU A 440 -71.16 -52.73 REMARK 500 2 TYR A 466 40.16 -92.29 REMARK 500 2 PRO A 469 178.63 -48.39 REMARK 500 2 TYR A 472 137.96 -174.83 REMARK 500 2 LEU A 491 -175.02 -55.01 REMARK 500 2 GLU A 493 -72.54 -120.19 REMARK 500 2 ASP A 508 99.09 -35.61 REMARK 500 2 LEU A 518 142.54 -35.99 REMARK 500 2 MET A 525 121.26 -36.05 REMARK 500 3 LYS A 428 149.98 -35.67 REMARK 500 3 SER A 465 152.11 -36.17 REMARK 500 3 TYR A 466 38.38 -95.45 REMARK 500 3 PRO A 468 165.33 -45.81 REMARK 500 3 PRO A 469 179.38 -46.95 REMARK 500 3 PRO A 504 -19.53 -46.30 REMARK 500 3 ASP A 508 105.82 -36.71 REMARK 500 3 PRO A 515 89.76 -43.87 REMARK 500 3 ASP A 522 140.81 -174.48 REMARK 500 4 TYR A 466 41.81 -88.87 REMARK 500 4 PRO A 468 166.60 -43.36 REMARK 500 4 LEU A 491 178.72 -54.75 REMARK 500 4 GLU A 493 -72.86 -115.81 REMARK 500 4 THR A 505 -66.65 -109.10 REMARK 500 4 ASP A 508 106.50 -34.13 REMARK 500 4 PRO A 515 85.65 -45.04 REMARK 500 4 ASP A 522 136.17 -173.83 REMARK 500 4 ASP A 526 119.73 -35.96 REMARK 500 5 SER A 420 48.17 39.90 REMARK 500 5 SER A 423 117.19 -163.97 REMARK 500 5 ARG A 449 -38.02 -38.32 REMARK 500 5 LYS A 464 -62.24 -104.52 REMARK 500 5 SER A 465 165.56 -48.81 REMARK 500 5 PHE A 467 96.87 -33.78 REMARK 500 5 PRO A 468 163.45 -43.45 REMARK 500 5 PRO A 469 177.78 -46.19 REMARK 500 5 TYR A 472 125.81 -170.85 REMARK 500 REMARK 500 THIS ENTRY HAS 249 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000005.1 RELATED DB: TARGETDB DBREF 2DNL A 426 526 UNP Q5T390 Q5T390_HUMAN 426 526 SEQADV 2DNL GLY A 419 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL SER A 420 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL SER A 421 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL GLY A 422 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL SER A 423 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL SER A 424 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL GLY A 425 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL SER A 527 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL GLY A 528 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL PRO A 529 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL SER A 530 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL SER A 531 UNP Q5T390 CLONING ARTIFACT SEQADV 2DNL GLY A 532 UNP Q5T390 CLONING ARTIFACT SEQRES 1 A 114 GLY SER SER GLY SER SER GLY SER ARG LYS VAL PHE VAL SEQRES 2 A 114 GLY GLY LEU PRO PRO ASP ILE ASP GLU ASP GLU ILE THR SEQRES 3 A 114 ALA SER PHE ARG ARG PHE GLY PRO LEU VAL VAL ASP TRP SEQRES 4 A 114 PRO HIS LYS ALA GLU SER LYS SER TYR PHE PRO PRO LYS SEQRES 5 A 114 GLY TYR ALA PHE LEU LEU PHE GLN GLU GLU SER SER VAL SEQRES 6 A 114 GLN ALA LEU ILE ASP ALA CYS LEU GLU GLU ASP GLY LYS SEQRES 7 A 114 LEU TYR LEU CYS VAL SER SER PRO THR ILE LYS ASP LYS SEQRES 8 A 114 PRO VAL GLN ILE ARG PRO TRP ASN LEU SER ASP SER ASP SEQRES 9 A 114 PHE VAL MET ASP SER GLY PRO SER SER GLY HELIX 1 1 ASP A 439 PHE A 447 1 9 HELIX 2 2 GLU A 479 CYS A 490 1 12 SHEET 1 A 6 VAL A 455 ASP A 456 0 SHEET 2 A 6 TYR A 472 LEU A 475 -1 O PHE A 474 N ASP A 456 SHEET 3 A 6 VAL A 429 GLY A 432 -1 N VAL A 431 O ALA A 473 SHEET 4 A 6 LYS A 509 ARG A 514 -1 O ARG A 514 N PHE A 430 SHEET 5 A 6 LYS A 496 VAL A 501 -1 N LEU A 499 O VAL A 511 SHEET 6 A 6 LEU A 491 GLU A 493 -1 N GLU A 493 O LYS A 496 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1