data_2DNM # _entry.id 2DNM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNM pdb_00002dnm 10.2210/pdb2dnm/pdb RCSB RCSB025624 ? ? WWPDB D_1000025624 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002000005.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNM _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of RNA binding domain in SRp46 splicing factor' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'SRp46 splicing factor' _entity.formula_weight 11390.590 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL DGRELRVQVARYGRRDLSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL DGRELRVQVARYGRRDLSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002000005.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 ASP n 1 10 VAL n 1 11 ASP n 1 12 GLY n 1 13 MET n 1 14 ILE n 1 15 THR n 1 16 LEU n 1 17 LYS n 1 18 VAL n 1 19 ASP n 1 20 ASN n 1 21 LEU n 1 22 THR n 1 23 TYR n 1 24 ARG n 1 25 THR n 1 26 SER n 1 27 PRO n 1 28 ASP n 1 29 SER n 1 30 LEU n 1 31 ARG n 1 32 ARG n 1 33 VAL n 1 34 PHE n 1 35 GLU n 1 36 LYS n 1 37 TYR n 1 38 GLY n 1 39 ARG n 1 40 VAL n 1 41 GLY n 1 42 ASP n 1 43 VAL n 1 44 TYR n 1 45 ILE n 1 46 PRO n 1 47 ARG n 1 48 GLU n 1 49 PRO n 1 50 HIS n 1 51 THR n 1 52 LYS n 1 53 ALA n 1 54 PRO n 1 55 ARG n 1 56 GLY n 1 57 PHE n 1 58 ALA n 1 59 PHE n 1 60 VAL n 1 61 ARG n 1 62 PHE n 1 63 HIS n 1 64 ASP n 1 65 ARG n 1 66 ARG n 1 67 ASP n 1 68 ALA n 1 69 GLN n 1 70 ASP n 1 71 ALA n 1 72 GLU n 1 73 ALA n 1 74 ALA n 1 75 MET n 1 76 ASP n 1 77 GLY n 1 78 ALA n 1 79 GLU n 1 80 LEU n 1 81 ASP n 1 82 GLY n 1 83 ARG n 1 84 GLU n 1 85 LEU n 1 86 ARG n 1 87 VAL n 1 88 GLN n 1 89 VAL n 1 90 ALA n 1 91 ARG n 1 92 TYR n 1 93 GLY n 1 94 ARG n 1 95 ARG n 1 96 ASP n 1 97 LEU n 1 98 SER n 1 99 GLY n 1 100 PRO n 1 101 SER n 1 102 SER n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene SRp46 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050829-09 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6PF01_HUMAN _struct_ref.pdbx_db_accession Q6PF01 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6PF01 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 97 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNM GLY A 1 ? UNP Q6PF01 ? ? 'cloning artifact' 1 1 1 2DNM SER A 2 ? UNP Q6PF01 ? ? 'cloning artifact' 2 2 1 2DNM SER A 3 ? UNP Q6PF01 ? ? 'cloning artifact' 3 3 1 2DNM GLY A 4 ? UNP Q6PF01 ? ? 'cloning artifact' 4 4 1 2DNM SER A 5 ? UNP Q6PF01 ? ? 'cloning artifact' 5 5 1 2DNM SER A 6 ? UNP Q6PF01 ? ? 'cloning artifact' 6 6 1 2DNM GLY A 7 ? UNP Q6PF01 ? ? 'cloning artifact' 7 7 1 2DNM SER A 98 ? UNP Q6PF01 ? ? 'cloning artifact' 98 8 1 2DNM GLY A 99 ? UNP Q6PF01 ? ? 'cloning artifact' 99 9 1 2DNM PRO A 100 ? UNP Q6PF01 ? ? 'cloning artifact' 100 10 1 2DNM SER A 101 ? UNP Q6PF01 ? ? 'cloning artifact' 101 11 1 2DNM SER A 102 ? UNP Q6PF01 ? ? 'cloning artifact' 102 12 1 2DNM GLY A 103 ? UNP Q6PF01 ? ? 'cloning artifact' 103 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.12mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNM _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNM _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.9742 Kobayashi,N 4 'structure solution' CYANA 2.0.17 Guntert,P 5 refinement CYANA 2.0.17 Guntert,P 6 # _exptl.entry_id 2DNM _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNM _struct.title 'Solution structure of RNA binding domain in SRp46 splicing factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNM _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 26 ? GLU A 35 ? SER A 26 GLU A 35 1 ? 10 HELX_P HELX_P2 2 ARG A 66 ? ASP A 76 ? ARG A 66 ASP A 76 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 40 ? TYR A 44 ? VAL A 40 TYR A 44 A 2 ALA A 58 ? PHE A 62 ? ALA A 58 PHE A 62 A 3 THR A 15 ? ASP A 19 ? THR A 15 ASP A 19 A 4 ARG A 86 ? VAL A 89 ? ARG A 86 VAL A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 44 ? N TYR A 44 O PHE A 59 ? O PHE A 59 A 2 3 O VAL A 60 ? O VAL A 60 N LEU A 16 ? N LEU A 16 A 3 4 N LYS A 17 ? N LYS A 17 O GLN A 88 ? O GLN A 88 # _database_PDB_matrix.entry_id 2DNM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 LYS 36 36 36 LYS LYS A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 GLY 103 103 103 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -37.12 130.25 2 1 PRO A 8 ? ? -78.77 37.04 3 1 ARG A 39 ? ? -43.58 159.40 4 1 PRO A 46 ? ? -47.99 154.44 5 1 PRO A 54 ? ? -47.38 97.53 6 1 ARG A 66 ? ? -98.73 -61.51 7 1 MET A 75 ? ? -59.33 -74.58 8 1 ASP A 76 ? ? -34.39 111.10 9 1 PRO A 100 ? ? -45.54 101.57 10 2 VAL A 10 ? ? -35.58 95.70 11 2 TYR A 37 ? ? -106.52 -64.36 12 2 PRO A 46 ? ? -47.32 155.04 13 2 ALA A 74 ? ? -34.04 -73.33 14 2 ASP A 76 ? ? -35.28 106.57 15 2 ALA A 90 ? ? -34.66 120.59 16 2 LEU A 97 ? ? -170.96 138.94 17 2 SER A 101 ? ? -69.24 92.69 18 3 ILE A 14 ? ? -35.02 122.07 19 3 THR A 25 ? ? -38.95 137.85 20 3 TYR A 37 ? ? -99.89 -60.96 21 3 ARG A 39 ? ? -51.88 173.53 22 3 PRO A 46 ? ? -48.96 153.53 23 3 GLU A 48 ? ? -44.63 156.12 24 3 GLU A 72 ? ? -66.82 -75.13 25 3 MET A 75 ? ? -96.13 -69.31 26 3 ASP A 76 ? ? -34.39 98.80 27 3 ARG A 86 ? ? -107.98 79.86 28 3 VAL A 87 ? ? -100.36 74.92 29 3 ARG A 94 ? ? -40.13 156.13 30 4 ASP A 11 ? ? -83.39 -71.88 31 4 ARG A 24 ? ? -36.02 -32.20 32 4 ARG A 39 ? ? -59.73 175.33 33 4 GLU A 48 ? ? -43.15 158.60 34 4 LYS A 52 ? ? -108.65 48.53 35 4 ARG A 55 ? ? -41.16 -71.29 36 4 GLU A 72 ? ? -59.55 -70.12 37 4 MET A 75 ? ? -75.37 -70.03 38 4 ASP A 76 ? ? -34.51 99.55 39 4 ALA A 90 ? ? -64.47 -73.77 40 4 PRO A 100 ? ? -77.01 41.19 41 4 SER A 101 ? ? -43.90 102.10 42 5 SER A 3 ? ? -35.27 151.32 43 5 PRO A 54 ? ? -46.95 98.33 44 5 GLU A 72 ? ? -63.84 -74.15 45 5 ALA A 74 ? ? -50.98 -72.01 46 5 ASP A 76 ? ? -34.43 117.91 47 5 ASP A 96 ? ? -69.83 82.85 48 5 SER A 98 ? ? -45.92 108.87 49 6 SER A 3 ? ? -123.36 -55.74 50 6 SER A 6 ? ? -124.07 -61.57 51 6 ASP A 11 ? ? -172.66 124.05 52 6 ILE A 14 ? ? -34.32 136.25 53 6 PRO A 49 ? ? -48.49 -19.88 54 6 HIS A 50 ? ? -103.08 -70.94 55 6 ARG A 55 ? ? -37.33 -29.06 56 6 GLU A 72 ? ? -54.51 -73.38 57 6 MET A 75 ? ? -99.82 -72.93 58 6 ASP A 76 ? ? -34.93 99.18 59 6 TYR A 92 ? ? -99.04 48.96 60 6 LEU A 97 ? ? -50.56 170.47 61 7 PRO A 8 ? ? -45.61 158.65 62 7 THR A 25 ? ? -37.66 152.47 63 7 HIS A 50 ? ? -92.51 -66.27 64 7 MET A 75 ? ? -81.63 -74.95 65 7 ASP A 76 ? ? -34.57 103.86 66 7 GLU A 84 ? ? -106.67 77.72 67 7 SER A 101 ? ? -52.96 108.80 68 8 MET A 13 ? ? -133.16 -39.18 69 8 ARG A 24 ? ? -39.75 -37.37 70 8 TYR A 37 ? ? -101.56 -69.04 71 8 GLU A 72 ? ? -62.18 -74.95 72 8 ASP A 76 ? ? -34.41 112.03 73 8 PRO A 100 ? ? -45.60 155.53 74 9 SER A 3 ? ? -170.77 149.79 75 9 PRO A 8 ? ? -74.67 46.59 76 9 VAL A 10 ? ? -68.91 91.44 77 9 ILE A 14 ? ? -34.76 132.95 78 9 THR A 25 ? ? -38.17 146.94 79 9 HIS A 50 ? ? -134.30 -56.72 80 9 LYS A 52 ? ? -83.45 36.08 81 9 GLU A 72 ? ? -57.44 -74.95 82 9 MET A 75 ? ? -77.72 -71.19 83 9 ASP A 76 ? ? -34.30 101.12 84 9 ALA A 90 ? ? -35.73 135.24 85 9 ARG A 91 ? ? -105.41 79.70 86 10 SER A 5 ? ? -96.34 -64.86 87 10 SER A 6 ? ? -108.42 -66.85 88 10 PRO A 8 ? ? -44.19 155.29 89 10 ASP A 9 ? ? -34.45 137.40 90 10 ASP A 42 ? ? -173.38 141.37 91 10 ARG A 55 ? ? -43.67 -70.59 92 10 GLU A 72 ? ? -53.21 -73.78 93 10 ASP A 76 ? ? -34.27 116.72 94 10 LEU A 85 ? ? -47.50 95.71 95 10 ARG A 86 ? ? -62.33 91.77 96 11 PRO A 8 ? ? -44.28 166.42 97 11 ILE A 14 ? ? -39.66 135.17 98 11 THR A 22 ? ? -48.89 159.58 99 11 VAL A 40 ? ? -53.53 106.08 100 11 ALA A 73 ? ? -39.56 -39.43 101 11 ASP A 76 ? ? -34.39 113.82 102 11 PRO A 100 ? ? -45.51 171.79 103 12 PRO A 8 ? ? -77.69 39.78 104 12 THR A 25 ? ? -37.20 145.55 105 12 ASP A 28 ? ? -68.36 -71.30 106 12 TYR A 37 ? ? -105.04 -64.53 107 12 PRO A 46 ? ? -44.45 160.63 108 12 PRO A 49 ? ? -48.65 -19.66 109 12 ALA A 73 ? ? -37.25 -33.13 110 12 ALA A 74 ? ? -90.28 -70.41 111 12 MET A 75 ? ? -44.08 -74.63 112 12 SER A 102 ? ? -92.31 42.11 113 13 SER A 5 ? ? -169.02 111.86 114 13 VAL A 10 ? ? -50.98 91.10 115 13 MET A 13 ? ? -43.99 162.00 116 13 THR A 25 ? ? -35.63 123.55 117 13 TYR A 37 ? ? -121.14 -66.73 118 13 HIS A 50 ? ? -98.65 -65.80 119 13 LYS A 52 ? ? -82.50 40.89 120 13 PRO A 54 ? ? -45.60 160.80 121 13 ASP A 76 ? ? -34.42 95.25 122 14 ARG A 24 ? ? -37.00 -38.30 123 14 TYR A 37 ? ? -102.70 -61.95 124 14 ARG A 39 ? ? -40.83 93.62 125 14 VAL A 40 ? ? -36.33 124.81 126 14 ALA A 73 ? ? -37.32 -28.18 127 14 ALA A 74 ? ? -92.10 -72.01 128 14 ASP A 76 ? ? -33.78 113.34 129 14 ASP A 96 ? ? -97.13 -74.72 130 15 SER A 3 ? ? -55.95 171.47 131 15 SER A 6 ? ? 34.83 47.51 132 15 PRO A 8 ? ? -74.78 49.40 133 15 VAL A 10 ? ? -112.63 74.72 134 15 MET A 13 ? ? -75.02 -71.36 135 15 THR A 22 ? ? -45.71 151.90 136 15 THR A 25 ? ? -34.77 140.12 137 15 LYS A 52 ? ? -81.47 41.15 138 15 ARG A 55 ? ? -34.69 -36.67 139 15 GLU A 72 ? ? -64.94 -74.87 140 15 ASP A 76 ? ? -34.15 99.33 141 15 LEU A 85 ? ? -36.36 119.95 142 16 SER A 2 ? ? -39.64 137.46 143 16 MET A 13 ? ? -122.28 -53.70 144 16 THR A 22 ? ? -44.10 163.54 145 16 ARG A 24 ? ? -38.24 -27.18 146 16 VAL A 40 ? ? -43.90 105.59 147 16 PRO A 46 ? ? -45.43 173.12 148 16 HIS A 50 ? ? -104.66 -67.22 149 16 ARG A 66 ? ? -48.63 -19.17 150 16 ASP A 76 ? ? -37.48 115.50 151 16 ALA A 90 ? ? -54.68 -73.56 152 16 ARG A 94 ? ? -132.13 -49.48 153 17 SER A 6 ? ? -108.33 42.43 154 17 VAL A 10 ? ? -56.21 109.31 155 17 LEU A 30 ? ? -39.54 -32.08 156 17 VAL A 40 ? ? -39.17 99.02 157 17 LYS A 52 ? ? -89.34 47.03 158 17 GLU A 72 ? ? -69.78 -73.36 159 17 MET A 75 ? ? -68.74 -74.22 160 17 ASP A 76 ? ? -36.51 108.02 161 17 ASP A 81 ? ? 45.33 28.41 162 17 ALA A 90 ? ? -51.44 -71.29 163 17 ARG A 94 ? ? -35.52 126.43 164 17 ARG A 95 ? ? -127.54 -54.26 165 17 ASP A 96 ? ? 35.22 41.08 166 18 MET A 13 ? ? -74.39 -72.65 167 18 ARG A 39 ? ? -60.43 -178.58 168 18 HIS A 50 ? ? -109.84 -61.65 169 18 ARG A 55 ? ? -36.14 -38.14 170 18 ALA A 74 ? ? -67.56 -73.77 171 18 MET A 75 ? ? -48.68 -72.21 172 18 ASP A 76 ? ? -34.39 99.54 173 18 LEU A 85 ? ? -51.86 104.34 174 18 ALA A 90 ? ? -85.16 49.39 175 19 SER A 2 ? ? -90.59 42.24 176 19 SER A 6 ? ? -58.41 105.55 177 19 PRO A 46 ? ? -47.42 156.23 178 19 LYS A 52 ? ? -83.05 39.62 179 19 PRO A 54 ? ? -47.41 156.32 180 19 ALA A 74 ? ? -86.94 -70.72 181 19 MET A 75 ? ? -41.98 -74.65 182 19 ASP A 76 ? ? -39.60 103.19 183 19 VAL A 87 ? ? -101.64 79.50 184 19 SER A 102 ? ? 35.80 43.28 185 20 THR A 25 ? ? -36.94 131.49 186 20 PRO A 46 ? ? -44.64 173.79 187 20 THR A 51 ? ? -175.04 149.61 188 20 PRO A 54 ? ? -48.15 174.17 189 20 ALA A 74 ? ? -45.30 -74.67 190 20 MET A 75 ? ? -42.57 -74.96 191 20 ASP A 76 ? ? -34.49 110.42 192 20 SER A 101 ? ? -169.08 109.47 #