data_2DNN # _entry.id 2DNN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNN pdb_00002dnn 10.2210/pdb2dnn/pdb RCSB RCSB025625 ? ? WWPDB D_1000025625 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002100747.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNN _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of RNA binding domain in RNA-binding protein 12' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RNA-binding protein 12' _entity.formula_weight 11891.367 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA-binding motif protein 12, SH3/WW domain anchor protein in the nucleus, SWAN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLM IQRYVEVSPATERQWVAAGGHITSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLM IQRYVEVSPATERQWVAAGGHITSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002100747.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 PRO n 1 10 LEU n 1 11 PRO n 1 12 ILE n 1 13 ASN n 1 14 PRO n 1 15 ASP n 1 16 ASP n 1 17 LEU n 1 18 TYR n 1 19 VAL n 1 20 SER n 1 21 VAL n 1 22 HIS n 1 23 GLY n 1 24 MET n 1 25 PRO n 1 26 PHE n 1 27 SER n 1 28 ALA n 1 29 MET n 1 30 GLU n 1 31 ASN n 1 32 ASP n 1 33 VAL n 1 34 ARG n 1 35 ASP n 1 36 PHE n 1 37 PHE n 1 38 HIS n 1 39 GLY n 1 40 LEU n 1 41 ARG n 1 42 VAL n 1 43 ASP n 1 44 ALA n 1 45 VAL n 1 46 HIS n 1 47 LEU n 1 48 LEU n 1 49 LYS n 1 50 ASP n 1 51 HIS n 1 52 VAL n 1 53 GLY n 1 54 ARG n 1 55 ASN n 1 56 ASN n 1 57 GLY n 1 58 ASN n 1 59 GLY n 1 60 LEU n 1 61 VAL n 1 62 LYS n 1 63 PHE n 1 64 LEU n 1 65 SER n 1 66 PRO n 1 67 GLN n 1 68 ASP n 1 69 THR n 1 70 PHE n 1 71 GLU n 1 72 ALA n 1 73 LEU n 1 74 LYS n 1 75 ARG n 1 76 ASN n 1 77 ARG n 1 78 MET n 1 79 LEU n 1 80 MET n 1 81 ILE n 1 82 GLN n 1 83 ARG n 1 84 TYR n 1 85 VAL n 1 86 GLU n 1 87 VAL n 1 88 SER n 1 89 PRO n 1 90 ALA n 1 91 THR n 1 92 GLU n 1 93 ARG n 1 94 GLN n 1 95 TRP n 1 96 VAL n 1 97 ALA n 1 98 ALA n 1 99 GLY n 1 100 GLY n 1 101 HIS n 1 102 ILE n 1 103 THR n 1 104 SER n 1 105 GLY n 1 106 PRO n 1 107 SER n 1 108 SER n 1 109 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene RBM12 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050829-24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBM12_HUMAN _struct_ref.pdbx_db_accession Q9NTZ6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 290 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NTZ6 _struct_ref_seq.db_align_beg 290 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 390 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 225 _struct_ref_seq.pdbx_auth_seq_align_end 320 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNN GLY A 1 ? UNP Q9NTZ6 ? ? 'cloning artifact' 218 1 1 2DNN SER A 2 ? UNP Q9NTZ6 ? ? 'cloning artifact' 219 2 1 2DNN SER A 3 ? UNP Q9NTZ6 ? ? 'cloning artifact' 220 3 1 2DNN GLY A 4 ? UNP Q9NTZ6 ? ? 'cloning artifact' 221 4 1 2DNN SER A 5 ? UNP Q9NTZ6 ? ? 'cloning artifact' 222 5 1 2DNN SER A 6 ? UNP Q9NTZ6 ? ? 'cloning artifact' 223 6 1 2DNN GLY A 7 ? UNP Q9NTZ6 ? ? 'cloning artifact' 224 7 1 2DNN SER A 104 ? UNP Q9NTZ6 ? ? 'cloning artifact' 321 8 1 2DNN GLY A 105 ? UNP Q9NTZ6 ? ? 'cloning artifact' 322 9 1 2DNN PRO A 106 ? UNP Q9NTZ6 ? ? 'cloning artifact' 323 10 1 2DNN SER A 107 ? UNP Q9NTZ6 ? ? 'cloning artifact' 324 11 1 2DNN SER A 108 ? UNP Q9NTZ6 ? ? 'cloning artifact' 325 12 1 2DNN GLY A 109 ? UNP Q9NTZ6 ? ? 'cloning artifact' 326 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.29mM 13C-15N PROTEIN, 0mM d-Tris-HCl(pH7.0), 100mM NaCl,1mM d-DTT, 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNN _pdbx_nmr_refine.method 'torsion angle dynamics, estrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNN _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, tructures with the lowest energy, tructures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.9742 Kobayashi,N 4 'structure solution' CYANA 2.0.17 Guntert,P 5 refinement CYANA 2.0.17 Guntert,P 6 # _exptl.entry_id 2DNN _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNN _struct.title 'Solution structure of RNA binding domain in RNA-binding protein 12' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNN _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? LEU A 17 ? ASN A 230 LEU A 234 1 ? 5 HELX_P HELX_P2 2 MET A 29 ? PHE A 37 ? MET A 246 PHE A 254 1 ? 9 HELX_P HELX_P3 3 SER A 65 ? ARG A 75 ? SER A 282 ARG A 292 1 ? 11 HELX_P HELX_P4 4 THR A 91 ? GLY A 100 ? THR A 308 GLY A 317 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 44 ? LEU A 47 ? ALA A 261 LEU A 264 A 2 ASN A 58 ? LYS A 62 ? ASN A 275 LYS A 279 A 3 TYR A 18 ? HIS A 22 ? TYR A 235 HIS A 239 A 4 GLU A 86 ? PRO A 89 ? GLU A 303 PRO A 306 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 46 ? N HIS A 263 O LEU A 60 ? O LEU A 277 A 2 3 O GLY A 59 ? O GLY A 276 N VAL A 21 ? N VAL A 238 A 3 4 N SER A 20 ? N SER A 237 O SER A 88 ? O SER A 305 # _database_PDB_matrix.entry_id 2DNN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 218 218 GLY GLY A . n A 1 2 SER 2 219 219 SER SER A . n A 1 3 SER 3 220 220 SER SER A . n A 1 4 GLY 4 221 221 GLY GLY A . n A 1 5 SER 5 222 222 SER SER A . n A 1 6 SER 6 223 223 SER SER A . n A 1 7 GLY 7 224 224 GLY GLY A . n A 1 8 LYS 8 225 225 LYS LYS A . n A 1 9 PRO 9 226 226 PRO PRO A . n A 1 10 LEU 10 227 227 LEU LEU A . n A 1 11 PRO 11 228 228 PRO PRO A . n A 1 12 ILE 12 229 229 ILE ILE A . n A 1 13 ASN 13 230 230 ASN ASN A . n A 1 14 PRO 14 231 231 PRO PRO A . n A 1 15 ASP 15 232 232 ASP ASP A . n A 1 16 ASP 16 233 233 ASP ASP A . n A 1 17 LEU 17 234 234 LEU LEU A . n A 1 18 TYR 18 235 235 TYR TYR A . n A 1 19 VAL 19 236 236 VAL VAL A . n A 1 20 SER 20 237 237 SER SER A . n A 1 21 VAL 21 238 238 VAL VAL A . n A 1 22 HIS 22 239 239 HIS HIS A . n A 1 23 GLY 23 240 240 GLY GLY A . n A 1 24 MET 24 241 241 MET MET A . n A 1 25 PRO 25 242 242 PRO PRO A . n A 1 26 PHE 26 243 243 PHE PHE A . n A 1 27 SER 27 244 244 SER SER A . n A 1 28 ALA 28 245 245 ALA ALA A . n A 1 29 MET 29 246 246 MET MET A . n A 1 30 GLU 30 247 247 GLU GLU A . n A 1 31 ASN 31 248 248 ASN ASN A . n A 1 32 ASP 32 249 249 ASP ASP A . n A 1 33 VAL 33 250 250 VAL VAL A . n A 1 34 ARG 34 251 251 ARG ARG A . n A 1 35 ASP 35 252 252 ASP ASP A . n A 1 36 PHE 36 253 253 PHE PHE A . n A 1 37 PHE 37 254 254 PHE PHE A . n A 1 38 HIS 38 255 255 HIS HIS A . n A 1 39 GLY 39 256 256 GLY GLY A . n A 1 40 LEU 40 257 257 LEU LEU A . n A 1 41 ARG 41 258 258 ARG ARG A . n A 1 42 VAL 42 259 259 VAL VAL A . n A 1 43 ASP 43 260 260 ASP ASP A . n A 1 44 ALA 44 261 261 ALA ALA A . n A 1 45 VAL 45 262 262 VAL VAL A . n A 1 46 HIS 46 263 263 HIS HIS A . n A 1 47 LEU 47 264 264 LEU LEU A . n A 1 48 LEU 48 265 265 LEU LEU A . n A 1 49 LYS 49 266 266 LYS LYS A . n A 1 50 ASP 50 267 267 ASP ASP A . n A 1 51 HIS 51 268 268 HIS HIS A . n A 1 52 VAL 52 269 269 VAL VAL A . n A 1 53 GLY 53 270 270 GLY GLY A . n A 1 54 ARG 54 271 271 ARG ARG A . n A 1 55 ASN 55 272 272 ASN ASN A . n A 1 56 ASN 56 273 273 ASN ASN A . n A 1 57 GLY 57 274 274 GLY GLY A . n A 1 58 ASN 58 275 275 ASN ASN A . n A 1 59 GLY 59 276 276 GLY GLY A . n A 1 60 LEU 60 277 277 LEU LEU A . n A 1 61 VAL 61 278 278 VAL VAL A . n A 1 62 LYS 62 279 279 LYS LYS A . n A 1 63 PHE 63 280 280 PHE PHE A . n A 1 64 LEU 64 281 281 LEU LEU A . n A 1 65 SER 65 282 282 SER SER A . n A 1 66 PRO 66 283 283 PRO PRO A . n A 1 67 GLN 67 284 284 GLN GLN A . n A 1 68 ASP 68 285 285 ASP ASP A . n A 1 69 THR 69 286 286 THR THR A . n A 1 70 PHE 70 287 287 PHE PHE A . n A 1 71 GLU 71 288 288 GLU GLU A . n A 1 72 ALA 72 289 289 ALA ALA A . n A 1 73 LEU 73 290 290 LEU LEU A . n A 1 74 LYS 74 291 291 LYS LYS A . n A 1 75 ARG 75 292 292 ARG ARG A . n A 1 76 ASN 76 293 293 ASN ASN A . n A 1 77 ARG 77 294 294 ARG ARG A . n A 1 78 MET 78 295 295 MET MET A . n A 1 79 LEU 79 296 296 LEU LEU A . n A 1 80 MET 80 297 297 MET MET A . n A 1 81 ILE 81 298 298 ILE ILE A . n A 1 82 GLN 82 299 299 GLN GLN A . n A 1 83 ARG 83 300 300 ARG ARG A . n A 1 84 TYR 84 301 301 TYR TYR A . n A 1 85 VAL 85 302 302 VAL VAL A . n A 1 86 GLU 86 303 303 GLU GLU A . n A 1 87 VAL 87 304 304 VAL VAL A . n A 1 88 SER 88 305 305 SER SER A . n A 1 89 PRO 89 306 306 PRO PRO A . n A 1 90 ALA 90 307 307 ALA ALA A . n A 1 91 THR 91 308 308 THR THR A . n A 1 92 GLU 92 309 309 GLU GLU A . n A 1 93 ARG 93 310 310 ARG ARG A . n A 1 94 GLN 94 311 311 GLN GLN A . n A 1 95 TRP 95 312 312 TRP TRP A . n A 1 96 VAL 96 313 313 VAL VAL A . n A 1 97 ALA 97 314 314 ALA ALA A . n A 1 98 ALA 98 315 315 ALA ALA A . n A 1 99 GLY 99 316 316 GLY GLY A . n A 1 100 GLY 100 317 317 GLY GLY A . n A 1 101 HIS 101 318 318 HIS HIS A . n A 1 102 ILE 102 319 319 ILE ILE A . n A 1 103 THR 103 320 320 THR THR A . n A 1 104 SER 104 321 321 SER SER A . n A 1 105 GLY 105 322 322 GLY GLY A . n A 1 106 PRO 106 323 323 PRO PRO A . n A 1 107 SER 107 324 324 SER SER A . n A 1 108 SER 108 325 325 SER SER A . n A 1 109 GLY 109 326 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 219 ? ? -170.45 146.13 2 1 ILE A 229 ? ? -34.09 126.44 3 1 PRO A 242 ? ? -45.27 157.44 4 1 GLU A 247 ? ? -36.34 -38.17 5 1 ASP A 252 ? ? -34.93 -38.44 6 1 PHE A 254 ? ? -96.99 41.81 7 1 ASN A 272 ? ? -68.83 86.47 8 1 GLN A 284 ? ? -38.80 -26.53 9 1 PHE A 287 ? ? -38.00 -35.84 10 1 PRO A 306 ? ? -48.81 153.20 11 1 PRO A 323 ? ? -45.74 99.04 12 2 PRO A 226 ? ? -45.39 92.91 13 2 PRO A 242 ? ? -48.25 -177.56 14 2 ALA A 245 ? ? -43.52 98.27 15 2 ASP A 252 ? ? -37.32 -39.43 16 2 PHE A 254 ? ? -100.07 43.60 17 2 ASP A 267 ? ? -49.75 169.89 18 2 ASN A 272 ? ? -54.45 89.44 19 2 PRO A 306 ? ? -49.17 158.89 20 2 PRO A 323 ? ? -45.60 154.85 21 3 SER A 219 ? ? -131.23 -59.04 22 3 SER A 220 ? ? -61.44 85.84 23 3 PHE A 254 ? ? -98.98 37.11 24 3 ASP A 267 ? ? -67.42 -176.80 25 3 ASN A 272 ? ? -63.87 90.21 26 3 MET A 297 ? ? -161.29 105.18 27 3 HIS A 318 ? ? -169.81 106.16 28 4 PRO A 242 ? ? -47.16 174.05 29 4 GLU A 247 ? ? -36.50 -37.10 30 4 ASP A 252 ? ? -38.60 -37.73 31 4 PHE A 254 ? ? -99.69 43.46 32 4 ASP A 267 ? ? -105.27 -75.05 33 4 HIS A 268 ? ? -133.17 -56.97 34 4 MET A 297 ? ? -172.45 105.43 35 4 PRO A 306 ? ? -48.30 159.33 36 4 THR A 320 ? ? -99.52 45.79 37 4 SER A 321 ? ? 36.96 46.51 38 5 SER A 219 ? ? -174.86 132.28 39 5 PRO A 242 ? ? -47.38 171.46 40 5 ALA A 245 ? ? -38.17 129.66 41 5 PHE A 254 ? ? -96.02 41.05 42 5 ASP A 267 ? ? -64.81 -175.04 43 5 ASN A 272 ? ? -64.58 81.85 44 5 MET A 297 ? ? -164.75 105.71 45 6 PRO A 242 ? ? -47.52 176.05 46 6 ASP A 252 ? ? -38.41 -37.92 47 6 PHE A 254 ? ? -100.02 45.87 48 6 MET A 297 ? ? -168.97 105.67 49 6 PRO A 306 ? ? -48.95 157.89 50 6 ILE A 319 ? ? -133.52 -40.33 51 6 THR A 320 ? ? 32.92 54.96 52 7 PRO A 228 ? ? -45.63 160.47 53 7 PRO A 242 ? ? -47.26 153.69 54 7 ALA A 245 ? ? -34.17 130.20 55 7 ASP A 252 ? ? -34.82 -39.06 56 7 PHE A 254 ? ? -92.39 42.00 57 7 HIS A 255 ? ? -86.32 31.81 58 7 MET A 297 ? ? -162.61 105.58 59 7 PRO A 306 ? ? -48.95 160.61 60 8 SER A 220 ? ? 38.66 45.22 61 8 LYS A 225 ? ? -33.55 96.90 62 8 PRO A 242 ? ? -46.92 156.90 63 8 PHE A 254 ? ? -99.93 46.82 64 8 MET A 297 ? ? -169.28 107.52 65 9 SER A 223 ? ? -170.75 146.61 66 9 PRO A 242 ? ? -47.25 165.57 67 9 ALA A 245 ? ? -35.87 114.38 68 9 PHE A 254 ? ? -91.01 35.32 69 9 ARG A 271 ? ? -40.87 152.88 70 9 MET A 297 ? ? -165.15 105.15 71 9 PRO A 306 ? ? -48.76 158.68 72 9 SER A 321 ? ? -57.23 176.10 73 10 ALA A 245 ? ? -53.68 102.75 74 10 PHE A 254 ? ? -97.14 41.34 75 10 ASN A 273 ? ? -37.31 -35.41 76 10 MET A 297 ? ? -170.84 109.94 77 10 HIS A 318 ? ? -170.46 116.04 78 10 THR A 320 ? ? -172.92 145.53 79 11 SER A 223 ? ? -171.00 149.06 80 11 PRO A 242 ? ? -46.95 173.09 81 11 ASP A 252 ? ? -36.32 -38.93 82 11 PHE A 254 ? ? -99.74 46.22 83 11 ASN A 272 ? ? -54.65 84.37 84 11 MET A 297 ? ? -170.56 107.06 85 11 PRO A 323 ? ? -78.56 40.40 86 12 PRO A 228 ? ? -44.91 151.74 87 12 ILE A 229 ? ? -35.71 121.61 88 12 PHE A 254 ? ? -100.27 48.26 89 12 SER A 321 ? ? -95.93 42.59 90 13 SER A 222 ? ? -171.71 107.68 91 13 PRO A 242 ? ? -45.54 173.50 92 13 ALA A 245 ? ? -39.67 120.00 93 13 PHE A 254 ? ? -91.61 39.39 94 13 VAL A 269 ? ? -132.71 -31.75 95 13 ASN A 275 ? ? -168.31 115.05 96 13 PHE A 287 ? ? -35.32 -35.51 97 13 ASN A 293 ? ? -42.50 151.80 98 13 MET A 297 ? ? -161.24 107.49 99 14 ILE A 229 ? ? -37.22 134.99 100 14 PRO A 242 ? ? -46.93 174.95 101 14 ALA A 245 ? ? -39.72 132.09 102 14 ASP A 252 ? ? -36.73 -39.21 103 14 PHE A 254 ? ? -100.08 42.23 104 14 PHE A 287 ? ? -36.54 -34.46 105 14 ASN A 293 ? ? -36.73 151.52 106 15 SER A 222 ? ? -174.87 130.49 107 15 PRO A 226 ? ? -44.78 99.87 108 15 ASP A 232 ? ? -35.81 -39.77 109 15 PRO A 242 ? ? -47.04 161.68 110 15 ALA A 245 ? ? -38.82 114.17 111 15 GLU A 247 ? ? -37.01 -38.41 112 15 PHE A 254 ? ? -100.31 43.42 113 15 ALA A 261 ? ? -174.72 144.37 114 15 ASP A 267 ? ? -66.16 -175.48 115 15 ASN A 272 ? ? -38.21 143.33 116 15 ARG A 294 ? ? 38.89 48.27 117 15 PRO A 306 ? ? -48.65 161.74 118 16 SER A 220 ? ? -123.95 -58.36 119 16 SER A 223 ? ? -38.16 147.42 120 16 ILE A 229 ? ? -38.64 150.61 121 16 ALA A 245 ? ? -35.26 139.16 122 16 ASP A 252 ? ? -37.38 -38.60 123 16 PHE A 254 ? ? -100.06 47.36 124 16 MET A 297 ? ? -169.00 105.12 125 17 ASP A 232 ? ? -36.34 -39.86 126 17 PRO A 242 ? ? -46.84 173.57 127 17 ALA A 245 ? ? -37.00 122.50 128 17 ASN A 272 ? ? -35.32 108.33 129 17 MET A 297 ? ? -169.65 105.27 130 18 ASP A 232 ? ? -35.85 -34.39 131 18 PRO A 242 ? ? -47.24 155.86 132 18 GLU A 247 ? ? -36.31 -37.97 133 18 ASP A 252 ? ? -35.78 -39.17 134 18 PHE A 254 ? ? -97.90 44.12 135 18 MET A 297 ? ? -169.54 104.97 136 18 ILE A 319 ? ? -34.11 149.05 137 19 PRO A 228 ? ? -44.16 154.05 138 19 ILE A 229 ? ? -37.55 127.67 139 19 PRO A 242 ? ? -47.84 -179.93 140 19 GLU A 247 ? ? -34.20 -37.79 141 19 ASP A 252 ? ? -36.89 -39.61 142 19 PHE A 254 ? ? -92.36 40.15 143 19 GLN A 299 ? ? 48.25 25.04 144 19 PRO A 306 ? ? -49.51 154.43 145 19 HIS A 318 ? ? -103.03 41.06 146 20 LYS A 225 ? ? -174.56 122.69 147 20 ASP A 252 ? ? -36.93 -36.72 148 20 PHE A 254 ? ? -95.12 41.98 149 20 HIS A 268 ? ? -131.77 -75.14 150 20 VAL A 269 ? ? -103.84 43.82 151 20 MET A 297 ? ? -164.92 106.71 152 20 PRO A 306 ? ? -49.52 155.95 153 20 ILE A 319 ? ? -39.90 -34.80 154 20 THR A 320 ? ? 33.97 41.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 326 ? A GLY 109 2 2 Y 1 A GLY 326 ? A GLY 109 3 3 Y 1 A GLY 326 ? A GLY 109 4 4 Y 1 A GLY 326 ? A GLY 109 5 5 Y 1 A GLY 326 ? A GLY 109 6 6 Y 1 A GLY 326 ? A GLY 109 7 7 Y 1 A GLY 326 ? A GLY 109 8 8 Y 1 A GLY 326 ? A GLY 109 9 9 Y 1 A GLY 326 ? A GLY 109 10 10 Y 1 A GLY 326 ? A GLY 109 11 11 Y 1 A GLY 326 ? A GLY 109 12 12 Y 1 A GLY 326 ? A GLY 109 13 13 Y 1 A GLY 326 ? A GLY 109 14 14 Y 1 A GLY 326 ? A GLY 109 15 15 Y 1 A GLY 326 ? A GLY 109 16 16 Y 1 A GLY 326 ? A GLY 109 17 17 Y 1 A GLY 326 ? A GLY 109 18 18 Y 1 A GLY 326 ? A GLY 109 19 19 Y 1 A GLY 326 ? A GLY 109 20 20 Y 1 A GLY 326 ? A GLY 109 #