data_2DNR # _entry.id 2DNR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNR pdb_00002dnr 10.2210/pdb2dnr/pdb RCSB RCSB025629 ? ? WWPDB D_1000025629 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002200887.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNR _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsuda, K.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of RNA binding domain in Synaptojanin 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsuda, K.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Synaptojanin-1 _entity.formula_weight 9655.860 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.3.36 _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Synaptic inositol-1,4,5-trisphosphate 5- phosphatase 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRTITI ALKSPSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRTITI ALKSPSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002200887.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 THR n 1 10 VAL n 1 11 LEU n 1 12 VAL n 1 13 SER n 1 14 ILE n 1 15 LYS n 1 16 SER n 1 17 SER n 1 18 LEU n 1 19 PRO n 1 20 GLU n 1 21 ASN n 1 22 ASN n 1 23 PHE n 1 24 PHE n 1 25 ASP n 1 26 ASP n 1 27 ALA n 1 28 LEU n 1 29 ILE n 1 30 ASP n 1 31 GLU n 1 32 LEU n 1 33 LEU n 1 34 GLN n 1 35 GLN n 1 36 PHE n 1 37 ALA n 1 38 SER n 1 39 PHE n 1 40 GLY n 1 41 GLU n 1 42 VAL n 1 43 ILE n 1 44 LEU n 1 45 ILE n 1 46 ARG n 1 47 PHE n 1 48 VAL n 1 49 GLU n 1 50 ASP n 1 51 LYS n 1 52 MET n 1 53 TRP n 1 54 VAL n 1 55 THR n 1 56 PHE n 1 57 LEU n 1 58 GLU n 1 59 GLY n 1 60 SER n 1 61 SER n 1 62 ALA n 1 63 LEU n 1 64 ASN n 1 65 VAL n 1 66 LEU n 1 67 SER n 1 68 LEU n 1 69 ASN n 1 70 GLY n 1 71 LYS n 1 72 GLU n 1 73 LEU n 1 74 LEU n 1 75 ASN n 1 76 ARG n 1 77 THR n 1 78 ILE n 1 79 THR n 1 80 ILE n 1 81 ALA n 1 82 LEU n 1 83 LYS n 1 84 SER n 1 85 PRO n 1 86 SER n 1 87 GLY n 1 88 PRO n 1 89 SER n 1 90 SER n 1 91 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene SYNJ1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050725-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYNJ1_HUMAN _struct_ref.pdbx_db_accession O43426 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 894 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 85 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O43426 _struct_ref_seq.db_align_beg 894 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 971 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 893 _struct_ref_seq.pdbx_auth_seq_align_end 970 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNR GLY A 1 ? UNP O43426 ? ? 'expression tag' 886 1 1 2DNR SER A 2 ? UNP O43426 ? ? 'expression tag' 887 2 1 2DNR SER A 3 ? UNP O43426 ? ? 'expression tag' 888 3 1 2DNR GLY A 4 ? UNP O43426 ? ? 'expression tag' 889 4 1 2DNR SER A 5 ? UNP O43426 ? ? 'expression tag' 890 5 1 2DNR SER A 6 ? UNP O43426 ? ? 'expression tag' 891 6 1 2DNR GLY A 7 ? UNP O43426 ? ? 'expression tag' 892 7 1 2DNR SER A 86 ? UNP O43426 ? ? 'expression tag' 971 8 1 2DNR GLY A 87 ? UNP O43426 ? ? 'expression tag' 972 9 1 2DNR PRO A 88 ? UNP O43426 ? ? 'expression tag' 973 10 1 2DNR SER A 89 ? UNP O43426 ? ? 'expression tag' 974 11 1 2DNR SER A 90 ? UNP O43426 ? ? 'expression tag' 975 12 1 2DNR GLY A 91 ? UNP O43426 ? ? 'expression tag' 976 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.11mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DNR _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DNR _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNR _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.9742 Kobayashi,N 4 'structure solution' CYANA 2.0.17 Guntert,P 5 refinement CYANA 2.0.17 Guntert,P 6 # _exptl.entry_id 2DNR _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNR _struct.title 'Solution structure of RNA binding domain in Synaptojanin 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNR _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 25 ? SER A 38 ? ASP A 910 SER A 923 1 ? 14 HELX_P HELX_P2 2 GLU A 58 ? VAL A 65 ? GLU A 943 VAL A 950 1 ? 8 HELX_P HELX_P3 3 LEU A 66 ? ASN A 69 ? LEU A 951 ASN A 954 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 42 ? PHE A 47 ? VAL A 927 PHE A 932 A 2 MET A 52 ? PHE A 56 ? MET A 937 PHE A 941 A 3 THR A 9 ? LYS A 15 ? THR A 894 LYS A 900 A 4 ARG A 76 ? LEU A 82 ? ARG A 961 LEU A 967 A 5 GLU A 72 ? LEU A 73 ? GLU A 957 LEU A 958 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 44 ? N LEU A 929 O THR A 55 ? O THR A 940 A 2 3 O VAL A 54 ? O VAL A 939 N VAL A 10 ? N VAL A 895 A 3 4 N LEU A 11 ? N LEU A 896 O ALA A 81 ? O ALA A 966 A 4 5 O ARG A 76 ? O ARG A 961 N LEU A 73 ? N LEU A 958 # _database_PDB_matrix.entry_id 2DNR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 886 886 GLY GLY A . n A 1 2 SER 2 887 887 SER SER A . n A 1 3 SER 3 888 888 SER SER A . n A 1 4 GLY 4 889 889 GLY GLY A . n A 1 5 SER 5 890 890 SER SER A . n A 1 6 SER 6 891 891 SER SER A . n A 1 7 GLY 7 892 892 GLY GLY A . n A 1 8 GLY 8 893 893 GLY GLY A . n A 1 9 THR 9 894 894 THR THR A . n A 1 10 VAL 10 895 895 VAL VAL A . n A 1 11 LEU 11 896 896 LEU LEU A . n A 1 12 VAL 12 897 897 VAL VAL A . n A 1 13 SER 13 898 898 SER SER A . n A 1 14 ILE 14 899 899 ILE ILE A . n A 1 15 LYS 15 900 900 LYS LYS A . n A 1 16 SER 16 901 901 SER SER A . n A 1 17 SER 17 902 902 SER SER A . n A 1 18 LEU 18 903 903 LEU LEU A . n A 1 19 PRO 19 904 904 PRO PRO A . n A 1 20 GLU 20 905 905 GLU GLU A . n A 1 21 ASN 21 906 906 ASN ASN A . n A 1 22 ASN 22 907 907 ASN ASN A . n A 1 23 PHE 23 908 908 PHE PHE A . n A 1 24 PHE 24 909 909 PHE PHE A . n A 1 25 ASP 25 910 910 ASP ASP A . n A 1 26 ASP 26 911 911 ASP ASP A . n A 1 27 ALA 27 912 912 ALA ALA A . n A 1 28 LEU 28 913 913 LEU LEU A . n A 1 29 ILE 29 914 914 ILE ILE A . n A 1 30 ASP 30 915 915 ASP ASP A . n A 1 31 GLU 31 916 916 GLU GLU A . n A 1 32 LEU 32 917 917 LEU LEU A . n A 1 33 LEU 33 918 918 LEU LEU A . n A 1 34 GLN 34 919 919 GLN GLN A . n A 1 35 GLN 35 920 920 GLN GLN A . n A 1 36 PHE 36 921 921 PHE PHE A . n A 1 37 ALA 37 922 922 ALA ALA A . n A 1 38 SER 38 923 923 SER SER A . n A 1 39 PHE 39 924 924 PHE PHE A . n A 1 40 GLY 40 925 925 GLY GLY A . n A 1 41 GLU 41 926 926 GLU GLU A . n A 1 42 VAL 42 927 927 VAL VAL A . n A 1 43 ILE 43 928 928 ILE ILE A . n A 1 44 LEU 44 929 929 LEU LEU A . n A 1 45 ILE 45 930 930 ILE ILE A . n A 1 46 ARG 46 931 931 ARG ARG A . n A 1 47 PHE 47 932 932 PHE PHE A . n A 1 48 VAL 48 933 933 VAL VAL A . n A 1 49 GLU 49 934 934 GLU GLU A . n A 1 50 ASP 50 935 935 ASP ASP A . n A 1 51 LYS 51 936 936 LYS LYS A . n A 1 52 MET 52 937 937 MET MET A . n A 1 53 TRP 53 938 938 TRP TRP A . n A 1 54 VAL 54 939 939 VAL VAL A . n A 1 55 THR 55 940 940 THR THR A . n A 1 56 PHE 56 941 941 PHE PHE A . n A 1 57 LEU 57 942 942 LEU LEU A . n A 1 58 GLU 58 943 943 GLU GLU A . n A 1 59 GLY 59 944 944 GLY GLY A . n A 1 60 SER 60 945 945 SER SER A . n A 1 61 SER 61 946 946 SER SER A . n A 1 62 ALA 62 947 947 ALA ALA A . n A 1 63 LEU 63 948 948 LEU LEU A . n A 1 64 ASN 64 949 949 ASN ASN A . n A 1 65 VAL 65 950 950 VAL VAL A . n A 1 66 LEU 66 951 951 LEU LEU A . n A 1 67 SER 67 952 952 SER SER A . n A 1 68 LEU 68 953 953 LEU LEU A . n A 1 69 ASN 69 954 954 ASN ASN A . n A 1 70 GLY 70 955 955 GLY GLY A . n A 1 71 LYS 71 956 956 LYS LYS A . n A 1 72 GLU 72 957 957 GLU GLU A . n A 1 73 LEU 73 958 958 LEU LEU A . n A 1 74 LEU 74 959 959 LEU LEU A . n A 1 75 ASN 75 960 960 ASN ASN A . n A 1 76 ARG 76 961 961 ARG ARG A . n A 1 77 THR 77 962 962 THR THR A . n A 1 78 ILE 78 963 963 ILE ILE A . n A 1 79 THR 79 964 964 THR THR A . n A 1 80 ILE 80 965 965 ILE ILE A . n A 1 81 ALA 81 966 966 ALA ALA A . n A 1 82 LEU 82 967 967 LEU LEU A . n A 1 83 LYS 83 968 968 LYS LYS A . n A 1 84 SER 84 969 969 SER SER A . n A 1 85 PRO 85 970 970 PRO PRO A . n A 1 86 SER 86 971 971 SER SER A . n A 1 87 GLY 87 972 972 GLY GLY A . n A 1 88 PRO 88 973 973 PRO PRO A . n A 1 89 SER 89 974 974 SER SER A . n A 1 90 SER 90 975 975 SER SER A . n A 1 91 GLY 91 976 976 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 890 ? ? -174.34 113.38 2 1 PHE A 924 ? ? -120.96 -64.10 3 1 PRO A 973 ? ? -45.75 155.23 4 2 PHE A 924 ? ? -125.70 -55.23 5 2 LYS A 956 ? ? -36.21 126.84 6 2 SER A 975 ? ? -69.53 83.64 7 3 SER A 890 ? ? -46.43 169.89 8 3 PHE A 924 ? ? -123.02 -64.43 9 3 LYS A 956 ? ? -38.33 127.46 10 3 LEU A 959 ? ? 37.70 43.07 11 3 SER A 971 ? ? -121.62 -58.57 12 3 PRO A 973 ? ? -45.45 161.53 13 4 ASN A 907 ? ? -38.02 -27.72 14 4 PHE A 924 ? ? -125.97 -57.33 15 4 LEU A 959 ? ? 38.83 46.02 16 5 ASN A 907 ? ? -38.97 -26.40 17 5 PHE A 924 ? ? -120.73 -57.63 18 5 LEU A 959 ? ? 39.23 46.29 19 6 PHE A 924 ? ? -125.13 -58.29 20 6 LYS A 956 ? ? -39.38 127.23 21 6 LEU A 959 ? ? 38.23 44.24 22 7 ASN A 907 ? ? -83.92 37.50 23 7 PHE A 924 ? ? -122.66 -65.09 24 7 LYS A 956 ? ? -35.38 127.87 25 7 LEU A 959 ? ? 39.53 45.39 26 8 SER A 902 ? ? -52.59 -74.39 27 8 PHE A 924 ? ? -121.01 -65.37 28 8 PRO A 973 ? ? -45.68 101.02 29 9 PHE A 924 ? ? -126.06 -58.17 30 9 LYS A 956 ? ? -39.71 127.76 31 9 SER A 969 ? ? -33.84 97.01 32 9 PRO A 970 ? ? -76.93 41.75 33 10 SER A 890 ? ? 34.57 38.48 34 10 PHE A 924 ? ? -123.18 -52.94 35 10 LYS A 956 ? ? -36.13 127.23 36 11 PHE A 924 ? ? -123.67 -63.02 37 11 LEU A 959 ? ? 39.10 44.84 38 11 LYS A 968 ? ? -105.12 -63.67 39 11 SER A 969 ? ? -34.74 143.93 40 12 PHE A 924 ? ? -120.02 -58.92 41 12 VAL A 950 ? ? -49.66 -18.65 42 12 SER A 974 ? ? -50.61 104.75 43 12 SER A 975 ? ? -108.87 42.31 44 13 SER A 902 ? ? -58.60 -70.66 45 13 PHE A 924 ? ? -121.27 -50.58 46 13 LEU A 959 ? ? 38.38 45.10 47 13 PRO A 973 ? ? -45.61 154.87 48 13 SER A 974 ? ? -41.77 154.75 49 13 SER A 975 ? ? -90.06 53.44 50 14 PHE A 924 ? ? -121.54 -52.40 51 14 VAL A 950 ? ? -49.84 -19.45 52 14 LEU A 959 ? ? 34.29 37.26 53 14 SER A 974 ? ? -37.22 131.18 54 15 ASN A 907 ? ? -37.33 -31.86 55 15 PHE A 924 ? ? -121.63 -58.50 56 15 LYS A 956 ? ? -37.97 128.19 57 15 PRO A 970 ? ? -45.61 101.41 58 16 PHE A 924 ? ? -120.17 -51.68 59 16 LYS A 956 ? ? -38.21 127.36 60 16 PRO A 973 ? ? -45.69 163.09 61 16 SER A 975 ? ? -39.41 116.20 62 17 SER A 887 ? ? -57.08 98.95 63 17 ASN A 907 ? ? -39.34 -26.49 64 17 PHE A 924 ? ? -124.00 -58.88 65 17 PRO A 970 ? ? -46.94 165.33 66 17 SER A 975 ? ? 38.99 42.37 67 18 PHE A 924 ? ? -121.64 -64.35 68 18 SER A 969 ? ? -43.42 155.71 69 18 PRO A 973 ? ? -76.82 41.96 70 18 SER A 974 ? ? -108.39 -60.02 71 19 SER A 888 ? ? -130.57 -44.49 72 19 SER A 891 ? ? 35.45 39.46 73 19 PHE A 924 ? ? -121.30 -59.60 74 19 PRO A 973 ? ? -79.38 20.89 75 20 PHE A 924 ? ? -125.42 -55.97 76 20 LYS A 956 ? ? -38.61 127.52 77 20 LYS A 968 ? ? -94.35 -70.52 #