HEADER RNA BINDING PROTEIN 26-APR-06 2DNR TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN SYNAPTOJANIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOJANIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: SYNAPTIC INOSITOL-1,4,5-TRISPHOSPHATE 5- PHOSPHATASE 1; COMPND 6 EC: 3.1.3.36; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYNJ1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050725-04 KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNR 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNR 1 VERSN REVDAT 1 26-OCT-06 2DNR 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN SYNAPTOJANIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025629. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11MM 13C-15N PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 890 113.38 -174.34 REMARK 500 1 PHE A 924 -64.10 -120.96 REMARK 500 1 PRO A 973 155.23 -45.75 REMARK 500 2 PHE A 924 -55.23 -125.70 REMARK 500 2 LYS A 956 126.84 -36.21 REMARK 500 2 SER A 975 83.64 -69.53 REMARK 500 3 SER A 890 169.89 -46.43 REMARK 500 3 PHE A 924 -64.43 -123.02 REMARK 500 3 LYS A 956 127.46 -38.33 REMARK 500 3 LEU A 959 43.07 37.70 REMARK 500 3 SER A 971 -58.57 -121.62 REMARK 500 3 PRO A 973 161.53 -45.45 REMARK 500 4 ASN A 907 -27.72 -38.02 REMARK 500 4 PHE A 924 -57.33 -125.97 REMARK 500 4 LEU A 959 46.02 38.83 REMARK 500 5 ASN A 907 -26.40 -38.97 REMARK 500 5 PHE A 924 -57.63 -120.73 REMARK 500 5 LEU A 959 46.29 39.23 REMARK 500 6 PHE A 924 -58.29 -125.13 REMARK 500 6 LYS A 956 127.23 -39.38 REMARK 500 6 LEU A 959 44.24 38.23 REMARK 500 7 ASN A 907 37.50 -83.92 REMARK 500 7 PHE A 924 -65.09 -122.66 REMARK 500 7 LYS A 956 127.87 -35.38 REMARK 500 7 LEU A 959 45.39 39.53 REMARK 500 8 SER A 902 -74.39 -52.59 REMARK 500 8 PHE A 924 -65.37 -121.01 REMARK 500 8 PRO A 973 101.02 -45.68 REMARK 500 9 PHE A 924 -58.17 -126.06 REMARK 500 9 LYS A 956 127.76 -39.71 REMARK 500 9 SER A 969 97.01 -33.84 REMARK 500 9 PRO A 970 41.75 -76.93 REMARK 500 10 SER A 890 38.48 34.57 REMARK 500 10 PHE A 924 -52.94 -123.18 REMARK 500 10 LYS A 956 127.23 -36.13 REMARK 500 11 PHE A 924 -63.02 -123.67 REMARK 500 11 LEU A 959 44.84 39.10 REMARK 500 11 LYS A 968 -63.67 -105.12 REMARK 500 11 SER A 969 143.93 -34.74 REMARK 500 12 PHE A 924 -58.92 -120.02 REMARK 500 12 VAL A 950 -18.65 -49.66 REMARK 500 12 SER A 974 104.75 -50.61 REMARK 500 12 SER A 975 42.31 -108.87 REMARK 500 13 SER A 902 -70.66 -58.60 REMARK 500 13 PHE A 924 -50.58 -121.27 REMARK 500 13 LEU A 959 45.10 38.38 REMARK 500 13 PRO A 973 154.87 -45.61 REMARK 500 13 SER A 974 154.75 -41.77 REMARK 500 13 SER A 975 53.44 -90.06 REMARK 500 14 PHE A 924 -52.40 -121.54 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002200887.1 RELATED DB: TARGETDB DBREF 2DNR A 893 970 UNP O43426 SYNJ1_HUMAN 894 971 SEQADV 2DNR GLY A 886 UNP O43426 EXPRESSION TAG SEQADV 2DNR SER A 887 UNP O43426 EXPRESSION TAG SEQADV 2DNR SER A 888 UNP O43426 EXPRESSION TAG SEQADV 2DNR GLY A 889 UNP O43426 EXPRESSION TAG SEQADV 2DNR SER A 890 UNP O43426 EXPRESSION TAG SEQADV 2DNR SER A 891 UNP O43426 EXPRESSION TAG SEQADV 2DNR GLY A 892 UNP O43426 EXPRESSION TAG SEQADV 2DNR SER A 971 UNP O43426 EXPRESSION TAG SEQADV 2DNR GLY A 972 UNP O43426 EXPRESSION TAG SEQADV 2DNR PRO A 973 UNP O43426 EXPRESSION TAG SEQADV 2DNR SER A 974 UNP O43426 EXPRESSION TAG SEQADV 2DNR SER A 975 UNP O43426 EXPRESSION TAG SEQADV 2DNR GLY A 976 UNP O43426 EXPRESSION TAG SEQRES 1 A 91 GLY SER SER GLY SER SER GLY GLY THR VAL LEU VAL SER SEQRES 2 A 91 ILE LYS SER SER LEU PRO GLU ASN ASN PHE PHE ASP ASP SEQRES 3 A 91 ALA LEU ILE ASP GLU LEU LEU GLN GLN PHE ALA SER PHE SEQRES 4 A 91 GLY GLU VAL ILE LEU ILE ARG PHE VAL GLU ASP LYS MET SEQRES 5 A 91 TRP VAL THR PHE LEU GLU GLY SER SER ALA LEU ASN VAL SEQRES 6 A 91 LEU SER LEU ASN GLY LYS GLU LEU LEU ASN ARG THR ILE SEQRES 7 A 91 THR ILE ALA LEU LYS SER PRO SER GLY PRO SER SER GLY HELIX 1 1 ASP A 910 SER A 923 1 14 HELIX 2 2 GLU A 943 VAL A 950 1 8 HELIX 3 3 LEU A 951 ASN A 954 5 4 SHEET 1 A 5 VAL A 927 PHE A 932 0 SHEET 2 A 5 MET A 937 PHE A 941 -1 O THR A 940 N LEU A 929 SHEET 3 A 5 THR A 894 LYS A 900 -1 N VAL A 895 O VAL A 939 SHEET 4 A 5 ARG A 961 LEU A 967 -1 O ALA A 966 N LEU A 896 SHEET 5 A 5 GLU A 957 LEU A 958 -1 N LEU A 958 O ARG A 961 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1