HEADER STRUCTURAL GENOMICS, STRUCTURAL PROTEIN 26-APR-06 2DNU TITLE SOLUTION STRUCTURE OF RSGI RUH-061, A SH3 DOMAIN FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 MULTIPLE DOMAINS 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: RUH-061; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3, RSGI, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.OHASHI,H.HIROTA,T.NAGASHIMA,C.KUROSAKI,F.HAYASHI,M.YOSHIDA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNU 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNU 1 VERSN REVDAT 1 26-OCT-06 2DNU 0 JRNL AUTH W.OHASHI,H.HIROTA,T.NAGASHIMA,C.KUROSAKI,F.HAYASHI, JRNL AUTH 2 M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-061, A SH3 DOMAIN FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025632. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM RUH-061 U-15N,13C; 20MM REMARK 210 TRIS U-2H; 100MM NACL; 1MM DTT U- REMARK 210 2H; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; ECA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA NMR 4.3.2, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, KUJIRA REMARK 210 0.9741, CYANA 2.0.17 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE THOSE WITH THE LOWEST NUMBER REMARK 210 OF TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 IS FOR EXPERIMENT_ID 1, SPECTROMETER_ID REMARK 210 2 IS FOR EXPERIMENT_ID 2 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 23 -37.09 -38.14 REMARK 500 1 SER A 69 129.78 -38.22 REMARK 500 2 SER A 2 170.11 -57.86 REMARK 500 2 ASP A 23 -35.04 -35.82 REMARK 500 3 SER A 5 97.58 -48.03 REMARK 500 3 ASP A 65 153.21 -38.15 REMARK 500 4 LEU A 40 26.24 42.49 REMARK 500 4 SER A 69 116.80 -34.82 REMARK 500 5 GLU A 8 -60.89 -109.78 REMARK 500 5 LYS A 64 43.73 -82.87 REMARK 500 5 ASP A 65 156.44 -43.43 REMARK 500 7 SER A 6 40.52 -105.03 REMARK 500 8 PRO A 68 1.63 -69.83 REMARK 500 8 SER A 69 72.58 -67.75 REMARK 500 9 SER A 5 46.26 -87.20 REMARK 500 9 GLU A 8 -61.80 -100.87 REMARK 500 10 LEU A 40 30.05 37.00 REMARK 500 10 GLU A 41 33.57 35.06 REMARK 500 10 TYR A 45 105.90 -55.47 REMARK 500 10 ALA A 63 176.72 -57.77 REMARK 500 10 ASP A 65 106.02 -53.42 REMARK 500 11 SER A 3 154.98 -45.82 REMARK 500 11 LYS A 22 33.97 -86.36 REMARK 500 12 SER A 6 106.35 -57.85 REMARK 500 12 GLU A 41 52.20 34.37 REMARK 500 12 ASP A 65 101.79 -51.95 REMARK 500 12 SER A 69 175.49 -49.90 REMARK 500 13 SER A 66 108.08 -46.64 REMARK 500 14 SER A 6 135.60 -170.41 REMARK 500 14 ILE A 36 -70.18 -101.64 REMARK 500 14 PRO A 68 0.27 -69.86 REMARK 500 15 GLU A 8 -36.29 -34.77 REMARK 500 15 ALA A 63 177.24 -58.37 REMARK 500 16 SER A 3 106.82 -48.92 REMARK 500 16 SER A 5 41.83 -103.61 REMARK 500 16 GLU A 8 -55.98 -130.48 REMARK 500 17 SER A 2 156.15 -38.74 REMARK 500 17 GLU A 41 52.71 37.02 REMARK 500 17 SER A 66 88.11 -64.82 REMARK 500 18 GLU A 8 -60.04 -92.12 REMARK 500 18 GLU A 41 49.78 -93.80 REMARK 500 18 LYS A 64 74.75 -111.54 REMARK 500 19 GLU A 41 46.74 -81.71 REMARK 500 20 SER A 6 104.19 -45.62 REMARK 500 20 GLU A 41 30.43 -85.07 REMARK 500 20 ALA A 63 175.19 -59.14 REMARK 500 20 PRO A 68 85.46 -69.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100407.1 RELATED DB: TARGETDB DBREF 2DNU A 8 65 UNP Q5TDQ8 Q5TDQ8_HUMAN 75 132 SEQADV 2DNU GLY A 1 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU SER A 2 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU SER A 3 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU GLY A 4 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU SER A 5 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU SER A 6 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU GLY A 7 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU SER A 66 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU GLY A 67 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU PRO A 68 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU SER A 69 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU SER A 70 UNP Q5TDQ8 CLONING ARTIFACT SEQADV 2DNU GLY A 71 UNP Q5TDQ8 CLONING ARTIFACT SEQRES 1 A 71 GLY SER SER GLY SER SER GLY GLU GLU LYS TYR VAL THR SEQRES 2 A 71 VAL GLN PRO TYR THR SER GLN SER LYS ASP GLU ILE GLY SEQRES 3 A 71 PHE GLU LYS GLY VAL THR VAL GLU VAL ILE ARG LYS ASN SEQRES 4 A 71 LEU GLU GLY TRP TRP TYR ILE ARG TYR LEU GLY LYS GLU SEQRES 5 A 71 GLY TRP ALA PRO ALA SER TYR LEU LYS LYS ALA LYS ASP SEQRES 6 A 71 SER GLY PRO SER SER GLY HELIX 1 1 SER A 58 LEU A 60 5 3 SHEET 1 A 5 LYS A 51 PRO A 56 0 SHEET 2 A 5 TRP A 43 TYR A 48 -1 N TRP A 44 O ALA A 55 SHEET 3 A 5 THR A 32 VAL A 35 -1 N GLU A 34 O ARG A 47 SHEET 4 A 5 GLU A 9 VAL A 12 -1 N TYR A 11 O VAL A 33 SHEET 5 A 5 LYS A 61 LYS A 62 -1 O LYS A 61 N VAL A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1