HEADER TRANSCRIPTION 27-APR-06 2DO3 TITLE SOLUTION STRUCTURE OF THE THIRD KOW MOTIF OF TRANSCRIPTION ELONGATION TITLE 2 FACTOR SPT5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR SPT5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KOW MOTIF; COMPND 5 SYNONYM: HSPT5, DRB SENSITIVITY-INDUCING FACTOR LARGE SUBUNIT, DSIF COMPND 6 LARGE SUBUNIT, DSIF P160, TAT- COTRANSACTIVATOR 1 PROTEIN, TAT-CT1 COMPND 7 PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUPT5H; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P060130-01; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS KOW MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DO3 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DO3 1 VERSN REVDAT 1 27-OCT-06 2DO3 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD KOW MOTIF OF TRANSCRIPTION JRNL TITL 2 ELONGATION FACTOR SPT5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DO3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025641. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 462 81.87 -59.79 REMARK 500 1 TYR A 471 109.46 -47.17 REMARK 500 1 ASN A 498 -61.03 -94.85 REMARK 500 2 PRO A 515 2.78 -69.78 REMARK 500 3 GLU A 462 143.10 -35.17 REMARK 500 3 ALA A 465 107.68 -54.16 REMARK 500 3 GLU A 467 38.48 -96.01 REMARK 500 3 LYS A 470 40.71 -86.22 REMARK 500 3 ASN A 498 -61.35 -97.81 REMARK 500 4 PHE A 485 40.02 -103.75 REMARK 500 5 GLU A 486 121.81 -39.67 REMARK 500 5 ASN A 498 -61.52 -98.36 REMARK 500 5 SER A 522 -66.26 -101.90 REMARK 500 6 GLU A 467 104.23 -57.10 REMARK 500 6 PHE A 485 41.68 -103.09 REMARK 500 6 GLU A 486 108.87 -56.83 REMARK 500 6 ASN A 498 -62.17 -90.03 REMARK 500 6 MET A 508 50.85 35.14 REMARK 500 6 PRO A 515 1.86 -69.73 REMARK 500 7 SER A 457 99.42 -62.82 REMARK 500 7 GLU A 486 106.52 -59.37 REMARK 500 7 MET A 508 49.06 35.08 REMARK 500 8 SER A 456 150.83 -47.67 REMARK 500 8 LYS A 470 69.31 -111.27 REMARK 500 8 PRO A 515 1.37 -69.80 REMARK 500 8 ASP A 517 40.31 -106.76 REMARK 500 9 SER A 459 106.19 -36.63 REMARK 500 9 SER A 460 106.84 -161.39 REMARK 500 9 ASN A 498 -66.48 -98.95 REMARK 500 9 LEU A 506 -73.77 -90.81 REMARK 500 9 CYS A 521 -50.40 -122.75 REMARK 500 9 SER A 522 45.33 -107.49 REMARK 500 10 GLU A 467 58.25 -104.08 REMARK 500 10 LEU A 468 56.38 -100.11 REMARK 500 10 PRO A 515 2.10 -69.85 REMARK 500 11 SER A 457 96.24 -67.53 REMARK 500 12 GLU A 462 -55.64 -127.96 REMARK 500 12 PRO A 464 94.22 -69.76 REMARK 500 12 MET A 508 35.23 36.30 REMARK 500 12 PRO A 515 0.86 -69.72 REMARK 500 13 LYS A 470 103.25 -38.03 REMARK 500 13 PHE A 472 98.65 -62.16 REMARK 500 13 MET A 474 128.92 -34.61 REMARK 500 13 CYS A 521 -42.41 -134.23 REMARK 500 13 SER A 522 56.84 -119.58 REMARK 500 14 LYS A 470 51.94 -97.18 REMARK 500 14 GLU A 486 108.62 -56.95 REMARK 500 15 SER A 457 166.63 -45.87 REMARK 500 15 MET A 474 133.05 -36.81 REMARK 500 15 SER A 522 53.61 71.94 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001095.1 RELATED DB: TARGETDB DBREF 2DO3 A 462 523 UNP O00267 SPT5H_HUMAN 462 523 SEQADV 2DO3 GLY A 455 UNP O00267 CLONING ARTIFACT SEQADV 2DO3 SER A 456 UNP O00267 CLONING ARTIFACT SEQADV 2DO3 SER A 457 UNP O00267 CLONING ARTIFACT SEQADV 2DO3 GLY A 458 UNP O00267 CLONING ARTIFACT SEQADV 2DO3 SER A 459 UNP O00267 CLONING ARTIFACT SEQADV 2DO3 SER A 460 UNP O00267 CLONING ARTIFACT SEQADV 2DO3 GLY A 461 UNP O00267 CLONING ARTIFACT SEQRES 1 A 69 GLY SER SER GLY SER SER GLY GLU PHE PRO ALA GLN GLU SEQRES 2 A 69 LEU ARG LYS TYR PHE LYS MET GLY ASP HIS VAL LYS VAL SEQRES 3 A 69 ILE ALA GLY ARG PHE GLU GLY ASP THR GLY LEU ILE VAL SEQRES 4 A 69 ARG VAL GLU GLU ASN PHE VAL ILE LEU PHE SER ASP LEU SEQRES 5 A 69 THR MET HIS GLU LEU LYS VAL LEU PRO ARG ASP LEU GLN SEQRES 6 A 69 LEU CYS SER GLU SHEET 1 A 5 GLU A 510 VAL A 513 0 SHEET 2 A 5 VAL A 500 SER A 504 -1 N VAL A 500 O VAL A 513 SHEET 3 A 5 ASP A 488 VAL A 495 -1 N LEU A 491 O PHE A 503 SHEET 4 A 5 HIS A 477 VAL A 480 -1 N VAL A 478 O GLY A 490 SHEET 5 A 5 LEU A 518 LEU A 520 -1 O GLN A 519 N LYS A 479 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1