HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-APR-06 2DO5 TITLE SOLUTION STRUCTURE OF THE SAP DOMAIN OF HUMAN SPLICING FACTOR 3B TITLE 2 SUBUNIT 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPLICING FACTOR 3B SUBUNIT 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAP DOMAIN; COMPND 5 SYNONYM: SPLICEOSOME-ASSOCIATED PROTEIN 145, SAP 145, SF3B150, PRE- COMPND 6 MRNA SPLICING FACTOR SF3B 145 KDA SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SF3B2, SAP145; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051212-14; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SAP DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DO5 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DO5 1 VERSN REVDAT 1 17-APR-07 2DO5 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SAP DOMAIN OF HUMAN SPLICING JRNL TITL 2 FACTOR 3B SUBUNIT 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DO5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025643. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C/15N-PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 1 42.25 -99.04 REMARK 500 1 ALA A 3 -36.38 -39.99 REMARK 500 1 TRP A 4 173.81 -47.04 REMARK 500 1 ILE A 20 38.09 -94.32 REMARK 500 1 SER A 46 47.60 36.97 REMARK 500 1 PRO A 48 90.05 -69.74 REMARK 500 2 ILE A 20 45.02 -101.75 REMARK 500 2 SER A 46 -71.04 -55.58 REMARK 500 2 SER A 49 177.81 -53.34 REMARK 500 3 SER A -5 -54.23 -122.62 REMARK 500 3 TYR A 1 39.39 -92.75 REMARK 500 3 TRP A 4 154.62 -45.34 REMARK 500 3 ILE A 20 38.49 -88.74 REMARK 500 3 SER A 46 -179.19 -66.23 REMARK 500 4 TYR A 1 40.70 -100.78 REMARK 500 4 ILE A 20 44.27 -88.91 REMARK 500 5 SER A -1 117.95 -36.88 REMARK 500 5 TYR A 1 42.04 -106.17 REMARK 500 5 ILE A 20 40.67 -94.06 REMARK 500 6 TRP A 4 162.81 -49.76 REMARK 500 6 LEU A 13 -38.82 -39.03 REMARK 500 6 ILE A 20 48.28 -95.37 REMARK 500 6 PRO A 45 -174.39 -69.80 REMARK 500 6 SER A 46 110.69 -161.69 REMARK 500 6 PRO A 48 87.16 -69.76 REMARK 500 7 ILE A 20 47.24 -89.62 REMARK 500 7 ARG A 44 157.50 -37.94 REMARK 500 7 PRO A 48 95.92 -69.84 REMARK 500 8 TRP A 4 152.26 -45.40 REMARK 500 8 ILE A 20 41.56 -85.81 REMARK 500 8 PRO A 45 87.75 -69.83 REMARK 500 8 SER A 49 -58.29 -124.15 REMARK 500 9 ILE A 20 46.49 -83.50 REMARK 500 9 SER A 50 42.80 38.14 REMARK 500 10 ILE A 20 42.07 -86.62 REMARK 500 10 GLN A 37 -73.75 -69.06 REMARK 500 10 ARG A 44 144.02 -37.90 REMARK 500 11 TRP A 4 159.68 -39.89 REMARK 500 11 ILE A 20 46.37 -85.68 REMARK 500 11 ARG A 44 144.03 -36.76 REMARK 500 11 PRO A 48 -175.50 -69.80 REMARK 500 12 TRP A 4 152.71 -44.76 REMARK 500 12 ILE A 20 47.88 -78.45 REMARK 500 12 GLN A 37 -38.63 -39.30 REMARK 500 12 ARG A 44 144.00 -37.70 REMARK 500 13 TYR A 1 40.82 -83.94 REMARK 500 13 VAL A 41 97.57 -50.43 REMARK 500 13 PRO A 45 88.06 -69.79 REMARK 500 13 SER A 46 143.66 -170.08 REMARK 500 14 TRP A 4 154.64 -40.78 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DO5 A 1 45 UNP Q13435 SF3B2_HUMAN 1 45 SEQADV 2DO5 GLY A -6 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 SER A -5 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 SER A -4 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 GLY A -3 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 SER A -2 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 SER A -1 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 GLY A 0 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 TYR A 1 UNP Q13435 MET 1 SEE REMARK 999 SEQADV 2DO5 GLY A 2 UNP Q13435 ALA 2 SEE REMARK 999 SEQADV 2DO5 ALA A 3 UNP Q13435 PRO 3 SEE REMARK 999 SEQADV 2DO5 TRP A 4 UNP Q13435 GLY 4 SEE REMARK 999 SEQADV 2DO5 SER A 46 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 GLY A 47 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 PRO A 48 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 SER A 49 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 SER A 50 UNP Q13435 CLONING ARTIFACT SEQADV 2DO5 GLY A 51 UNP Q13435 CLONING ARTIFACT SEQRES 1 A 58 GLY SER SER GLY SER SER GLY TYR GLY ALA TRP ALA ALA SEQRES 2 A 58 GLN GLU LEU GLN ALA LYS LEU ALA GLU ILE GLY ALA PRO SEQRES 3 A 58 ILE GLN GLY ASN ARG GLU GLU LEU VAL GLU ARG LEU GLN SEQRES 4 A 58 SER TYR THR ARG GLN THR GLY ILE VAL LEU ASN ARG PRO SEQRES 5 A 58 SER GLY PRO SER SER GLY HELIX 1 1 ALA A 5 GLY A 17 1 13 HELIX 2 2 ASN A 23 GLY A 39 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1