HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-APR-06 2DO8 TITLE SOLUTION STRUCTURE OF UPF0301 PROTEIN HD_1794 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0301 PROTEIN HD_1794; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS DUCREYI; SOURCE 3 ORGANISM_TAXID: 730; SOURCE 4 GENE: ORDEREDLOCUSNAMES: HD_1794; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NESG, GFT NMR, STRUCTRAL GENOMICS, HDR14, STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Q.ZHANG,G.LIU,R.SHASTRY,M.JIANG,K.CUNNINGHAM,L.C.MA,R.XIAO,T.R.ACTON, AUTHOR 2 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG) REVDAT 4 29-MAY-24 2DO8 1 REMARK REVDAT 3 09-MAR-22 2DO8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DO8 1 VERSN REVDAT 1 25-MAY-06 2DO8 0 JRNL AUTH Q.ZHANG,G.LIU,R.SHASTRY,M.JIANG,K.CUNNINGHAM,L.C.MA,R.XIAO, JRNL AUTH 2 T.R.ACTON,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION STRUCTURE OF UPF0301 PROTEIN HD_1794 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, CNS 1.1 REMARK 3 AUTHORS : GUNTERT, P. (DYANA), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DO8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025646. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM MES; 10MM DTT; 50MM REMARK 210 ARGININE; 0.02% NAN3; 95% H2O, 5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : GFT (4,3)D HNNCABCA; GFT (4,3)D REMARK 210 CABCA(CO)NHN; GFT (4,3)D REMARK 210 HABCAB(CO)NHN; GFT (4,3)D HCCH; REMARK 210 SIMULTANEOUS HETERONUCLEAR REMARK 210 RESOLVED [1H,1H]-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE 2.3, XEASY REMARK 210 1.3, UBNMR 1.0, AUTOSTRUCTURE REMARK 210 2.0.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING GFT TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 2 116.26 61.06 REMARK 500 1 ASN A 4 114.83 69.90 REMARK 500 1 THR A 13 82.38 58.35 REMARK 500 1 MET A 16 -74.61 -168.52 REMARK 500 1 ASP A 17 73.02 51.49 REMARK 500 1 ASP A 18 -49.70 75.64 REMARK 500 1 PHE A 21 -12.64 -176.94 REMARK 500 1 ARG A 23 123.74 71.50 REMARK 500 1 VAL A 25 140.60 73.55 REMARK 500 1 ILE A 26 -58.42 -135.19 REMARK 500 1 ASN A 42 103.59 63.97 REMARK 500 1 THR A 43 91.52 -161.34 REMARK 500 1 MET A 56 -91.69 -82.35 REMARK 500 1 ASP A 57 24.35 -146.76 REMARK 500 1 ALA A 61 -165.59 -111.34 REMARK 500 1 ARG A 64 -163.41 56.86 REMARK 500 1 THR A 67 -20.22 73.31 REMARK 500 1 ASP A 91 -147.89 59.68 REMARK 500 1 PHE A 94 102.60 167.59 REMARK 500 1 THR A 95 -55.05 -121.26 REMARK 500 1 HIS A 137 -9.19 74.83 REMARK 500 1 ASN A 155 -83.56 49.97 REMARK 500 1 THR A 161 88.46 38.39 REMARK 500 1 SER A 162 -37.24 76.29 REMARK 500 1 TYR A 163 93.61 68.23 REMARK 500 1 LEU A 164 -55.97 -173.60 REMARK 500 1 ASP A 165 143.27 175.47 REMARK 500 1 ILE A 176 73.94 55.62 REMARK 500 1 ILE A 179 166.47 68.77 REMARK 500 1 LEU A 180 62.51 63.01 REMARK 500 1 ALA A 181 -59.14 177.55 REMARK 500 1 ARG A 185 78.40 -108.47 REMARK 500 2 LEU A 5 -152.12 -130.00 REMARK 500 2 GLN A 6 119.25 67.98 REMARK 500 2 THR A 13 96.77 53.53 REMARK 500 2 ASP A 18 173.75 65.76 REMARK 500 2 GLU A 19 -39.70 70.99 REMARK 500 2 ARG A 23 86.62 64.16 REMARK 500 2 VAL A 25 100.47 68.24 REMARK 500 2 ILE A 26 -142.61 -129.67 REMARK 500 2 VAL A 39 68.03 -113.37 REMARK 500 2 ASN A 42 85.88 62.99 REMARK 500 2 THR A 43 123.11 -179.10 REMARK 500 2 ASP A 57 -150.47 -150.14 REMARK 500 2 ALA A 61 159.60 74.84 REMARK 500 2 LYS A 62 150.29 68.35 REMARK 500 2 MET A 71 165.89 63.06 REMARK 500 2 THR A 90 -169.30 -126.30 REMARK 500 2 HIS A 92 165.94 75.53 REMARK 500 2 GLU A 93 169.29 69.41 REMARK 500 REMARK 500 THIS ENTRY HAS 566 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HDR14 RELATED DB: TARGETDB DBREF 2DO8 A 1 186 UNP Q7VKS7 Y1794_HAEDU 1 186 SEQADV 2DO8 LEU A 187 UNP Q7VKS7 CLONING ARTIFACT SEQADV 2DO8 GLU A 188 UNP Q7VKS7 CLONING ARTIFACT SEQRES 1 A 188 MET PHE GLY ASN LEU GLN GLY LYS PHE ILE ILE ALA THR SEQRES 2 A 188 PRO GLU MET ASP ASP GLU TYR PHE ASP ARG THR VAL ILE SEQRES 3 A 188 TYR ILE CYS GLU HIS ASN ASP ASN GLY THR ILE GLY VAL SEQRES 4 A 188 ILE ILE ASN THR PRO THR ASP LEU SER VAL LEU GLU LEU SEQRES 5 A 188 LEU THR ARG MET ASP PHE GLN MET ALA LYS PRO ARG ILE SEQRES 6 A 188 TYR THR GLN ASP GLN MET VAL LEU ASN GLY GLY PRO VAL SEQRES 7 A 188 ASN GLN ASP ARG GLY PHE ILE VAL HIS SER LYS THR ASP SEQRES 8 A 188 HIS GLU PHE THR HIS SER TYR LYS VAL THR ASP ASP ILE SEQRES 9 A 188 THR LEU THR THR SER GLY ASP VAL LEU ASP SER PHE GLY SEQRES 10 A 188 THR GLN THR ALA PRO GLU LYS PHE ILE VAL CYS LEU GLY SEQRES 11 A 188 CYS SER THR TRP LYS PRO HIS GLN LEU GLU GLN GLU ILE SEQRES 12 A 188 ALA GLN ASN TYR TRP LEU LEU SER GLU ALA ASN ASN GLN SEQRES 13 A 188 THR LEU PHE GLU THR SER TYR LEU ASP ARG TRP VAL GLU SEQRES 14 A 188 ALA ASN GLU MET LEU GLY ILE SER GLY ILE LEU ALA PRO SEQRES 15 A 188 ALA GLY ARG ALA LEU GLU HELIX 1 1 VAL A 49 MET A 56 1 8 HELIX 2 2 PRO A 63 THR A 67 5 5 HELIX 3 3 GLY A 110 PHE A 116 1 7 HELIX 4 4 HIS A 137 GLN A 145 1 9 HELIX 5 5 ASN A 155 GLU A 160 1 6 HELIX 6 6 VAL A 168 MET A 173 1 6 SHEET 1 A 2 LYS A 8 ILE A 11 0 SHEET 2 A 2 LEU A 149 GLU A 152 -1 O LEU A 149 N ILE A 11 SHEET 1 B 5 TYR A 27 ASN A 32 0 SHEET 2 B 5 GLY A 35 VAL A 39 -1 O GLY A 35 N ASN A 32 SHEET 3 B 5 PHE A 125 TRP A 134 -1 O TRP A 134 N THR A 36 SHEET 4 B 5 MET A 71 ASN A 74 1 N LEU A 73 O LEU A 129 SHEET 5 B 5 PRO A 44 SER A 48 -1 N LEU A 47 O VAL A 72 SHEET 1 C 6 TYR A 27 ASN A 32 0 SHEET 2 C 6 GLY A 35 VAL A 39 -1 O GLY A 35 N ASN A 32 SHEET 3 C 6 PHE A 125 TRP A 134 -1 O TRP A 134 N THR A 36 SHEET 4 C 6 VAL A 78 HIS A 87 -1 N PHE A 84 O CYS A 128 SHEET 5 C 6 THR A 105 THR A 107 -1 O THR A 107 N ILE A 85 SHEET 6 C 6 SER A 97 LYS A 99 -1 N TYR A 98 O LEU A 106 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1