HEADER SIGNALING PROTEIN 28-APR-06 2DO9 TITLE SOLUTION STRUCTURE OF THE PYRIN/PAAD-DAPIN DOMAIN IN MOUSE NALP10 TITLE 2 (NACHT, LEUCINE RICH REPEAT AND PYD CONTAINING 10) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NACHT-, LRR- AND PYD-CONTAINING PROTEIN 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PYD DOMAIN, DAPIN DOMAIN; COMPND 5 SYNONYM: NALP10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: 4732403D13, NALP10, PYNOD; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050912-07; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS NALP, APOPTOSIS, INFLAMMATION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DO9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DO9 1 VERSN REVDAT 1 28-OCT-06 2DO9 0 JRNL AUTH K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PYRIN/PAAD-DAPIN DOMAIN IN MOUSE JRNL TITL 2 NALP10 (NACHT, LEUCINE RICH REPEAT AND PYD CONTAINING 10) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CNS 1.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DO9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025647. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN; 20MM D-TRIS-HCL(PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2002, NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 111.00 60.57 REMARK 500 1 SER A 5 -63.88 -141.46 REMARK 500 1 SER A 6 -56.58 -166.66 REMARK 500 1 MET A 8 -46.20 -130.41 REMARK 500 1 ALA A 9 105.35 -58.35 REMARK 500 1 HIS A 46 36.36 -97.42 REMARK 500 1 TYR A 68 -66.86 -123.90 REMARK 500 1 ASN A 85 76.96 61.55 REMARK 500 1 CYS A 97 91.49 -170.29 REMARK 500 1 ASN A 99 92.84 -177.53 REMARK 500 1 GLU A 103 152.03 61.61 REMARK 500 1 ILE A 104 26.58 -142.17 REMARK 500 1 VAL A 109 -46.99 -142.74 REMARK 500 1 SER A 110 -56.47 -150.49 REMARK 500 1 SER A 113 -51.20 -150.28 REMARK 500 2 ALA A 48 -67.25 -132.64 REMARK 500 2 LEU A 55 175.24 -58.49 REMARK 500 2 TYR A 68 -66.77 -120.89 REMARK 500 2 ASN A 85 87.99 61.78 REMARK 500 2 VAL A 96 95.23 -66.25 REMARK 500 2 CYS A 97 112.81 -171.89 REMARK 500 2 ASP A 100 109.88 62.44 REMARK 500 2 GLU A 107 -71.25 -59.62 REMARK 500 2 HIS A 108 178.03 61.69 REMARK 500 2 SER A 110 72.24 -151.28 REMARK 500 2 SER A 114 103.99 62.08 REMARK 500 3 SER A 5 161.03 60.39 REMARK 500 3 LEU A 10 100.04 60.85 REMARK 500 3 HIS A 46 78.53 -65.68 REMARK 500 3 ALA A 48 42.09 -106.21 REMARK 500 3 ARG A 49 37.97 -144.70 REMARK 500 3 LEU A 55 87.77 -59.41 REMARK 500 3 TYR A 68 -67.93 -131.98 REMARK 500 3 ASN A 85 75.59 63.91 REMARK 500 3 CYS A 97 -68.42 -156.31 REMARK 500 3 LEU A 98 -79.92 62.96 REMARK 500 3 ASP A 100 102.44 59.99 REMARK 500 3 GLU A 103 75.18 60.15 REMARK 500 3 ILE A 104 30.93 -149.34 REMARK 500 3 TYR A 105 -47.51 -142.20 REMARK 500 3 ARG A 106 40.96 -96.69 REMARK 500 3 GLU A 107 103.96 -59.92 REMARK 500 3 SER A 110 77.13 -118.90 REMARK 500 3 PRO A 112 178.43 -52.13 REMARK 500 3 SER A 113 88.41 60.42 REMARK 500 4 SER A 5 35.78 -99.29 REMARK 500 4 MET A 8 -62.88 -99.77 REMARK 500 4 ASN A 14 -60.21 -102.03 REMARK 500 4 GLN A 44 31.00 -149.05 REMARK 500 4 HIS A 46 33.39 -168.23 REMARK 500 REMARK 500 THIS ENTRY HAS 280 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000594.1 RELATED DB: TARGETDB DBREF 2DO9 A 8 109 UNP Q8CCN1 NAL10_MOUSE 1 102 SEQADV 2DO9 GLY A 1 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 SER A 2 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 SER A 3 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 GLY A 4 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 SER A 5 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 SER A 6 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 GLY A 7 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 SER A 110 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 GLY A 111 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 PRO A 112 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 SER A 113 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 SER A 114 UNP Q8CCN1 CLONING ARTIFACT SEQADV 2DO9 GLY A 115 UNP Q8CCN1 CLONING ARTIFACT SEQRES 1 A 115 GLY SER SER GLY SER SER GLY MET ALA LEU ALA ARG ALA SEQRES 2 A 115 ASN SER PRO GLN GLU ALA LEU LEU TRP ALA LEU ASN ASP SEQRES 3 A 115 LEU GLU GLU ASN SER PHE LYS THR LEU LYS PHE HIS LEU SEQRES 4 A 115 ARG ASP VAL THR GLN PHE HIS LEU ALA ARG GLY GLU LEU SEQRES 5 A 115 GLU SER LEU SER GLN VAL ASP LEU ALA SER LYS LEU ILE SEQRES 6 A 115 SER MET TYR GLY ALA GLN GLU ALA VAL ARG VAL VAL SER SEQRES 7 A 115 ARG SER LEU LEU ALA MET ASN LEU MET GLU LEU VAL ASP SEQRES 8 A 115 TYR LEU ASN GLN VAL CYS LEU ASN ASP TYR ARG GLU ILE SEQRES 9 A 115 TYR ARG GLU HIS VAL SER GLY PRO SER SER GLY HELIX 1 1 SER A 15 LEU A 27 1 13 HELIX 2 2 GLU A 28 GLN A 44 1 17 HELIX 3 3 VAL A 58 TYR A 68 1 11 HELIX 4 4 GLY A 69 ASN A 85 1 17 HELIX 5 5 LEU A 86 VAL A 96 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1