data_2DOC # _entry.id 2DOC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DOC pdb_00002doc 10.2210/pdb2doc/pdb RCSB RCSB025650 ? ? WWPDB D_1000025650 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003001927.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DOC _pdbx_database_status.recvd_initial_deposition_date 2006-04-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoneyama, M.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the Fibronectin type-III domain of human Neural cell adhesion molecule 2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoneyama, M.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Neural cell adhesion molecule 2' _entity.formula_weight 12709.188 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Fibronectin type-III domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'N-CAM 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNN LEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNN LEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003001927.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLN n 1 9 GLU n 1 10 TYR n 1 11 ILE n 1 12 LEU n 1 13 ALA n 1 14 LEU n 1 15 ALA n 1 16 ASP n 1 17 VAL n 1 18 PRO n 1 19 SER n 1 20 SER n 1 21 PRO n 1 22 TYR n 1 23 GLY n 1 24 VAL n 1 25 LYS n 1 26 ILE n 1 27 ILE n 1 28 GLU n 1 29 LEU n 1 30 SER n 1 31 GLN n 1 32 THR n 1 33 THR n 1 34 ALA n 1 35 LYS n 1 36 VAL n 1 37 SER n 1 38 PHE n 1 39 ASN n 1 40 LYS n 1 41 PRO n 1 42 ASP n 1 43 SER n 1 44 HIS n 1 45 GLY n 1 46 GLY n 1 47 VAL n 1 48 PRO n 1 49 ILE n 1 50 HIS n 1 51 HIS n 1 52 TYR n 1 53 GLN n 1 54 VAL n 1 55 ASP n 1 56 VAL n 1 57 LYS n 1 58 GLU n 1 59 VAL n 1 60 ALA n 1 61 SER n 1 62 GLU n 1 63 ILE n 1 64 TRP n 1 65 LYS n 1 66 ILE n 1 67 VAL n 1 68 ARG n 1 69 SER n 1 70 HIS n 1 71 GLY n 1 72 VAL n 1 73 GLN n 1 74 THR n 1 75 MET n 1 76 VAL n 1 77 VAL n 1 78 LEU n 1 79 ASN n 1 80 ASN n 1 81 LEU n 1 82 GLU n 1 83 PRO n 1 84 ASN n 1 85 THR n 1 86 THR n 1 87 TYR n 1 88 GLU n 1 89 ILE n 1 90 ARG n 1 91 VAL n 1 92 ALA n 1 93 ALA n 1 94 VAL n 1 95 ASN n 1 96 GLY n 1 97 LYS n 1 98 GLY n 1 99 GLN n 1 100 GLY n 1 101 ASP n 1 102 TYR n 1 103 SER n 1 104 LYS n 1 105 ILE n 1 106 GLU n 1 107 ILE n 1 108 PHE n 1 109 GLN n 1 110 THR n 1 111 LEU n 1 112 PRO n 1 113 VAL n 1 114 SER n 1 115 GLY n 1 116 PRO n 1 117 SER n 1 118 SER n 1 119 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene NCAM2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050719-17 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NCAM2_HUMAN _struct_ref.pdbx_db_accession O15394 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 486 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DOC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15394 _struct_ref_seq.db_align_beg 486 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 591 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 113 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DOC GLY A 1 ? UNP O15394 ? ? 'cloning artifact' 1 1 1 2DOC SER A 2 ? UNP O15394 ? ? 'cloning artifact' 2 2 1 2DOC SER A 3 ? UNP O15394 ? ? 'cloning artifact' 3 3 1 2DOC GLY A 4 ? UNP O15394 ? ? 'cloning artifact' 4 4 1 2DOC SER A 5 ? UNP O15394 ? ? 'cloning artifact' 5 5 1 2DOC SER A 6 ? UNP O15394 ? ? 'cloning artifact' 6 6 1 2DOC GLY A 7 ? UNP O15394 ? ? 'cloning artifact' 7 7 1 2DOC SER A 114 ? UNP O15394 ? ? 'cloning artifact' 114 8 1 2DOC GLY A 115 ? UNP O15394 ? ? 'cloning artifact' 115 9 1 2DOC PRO A 116 ? UNP O15394 ? ? 'cloning artifact' 116 10 1 2DOC SER A 117 ? UNP O15394 ? ? 'cloning artifact' 117 11 1 2DOC SER A 118 ? UNP O15394 ? ? 'cloning artifact' 118 12 1 2DOC GLY A 119 ? UNP O15394 ? ? 'cloning artifact' 119 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.14mM Fibronectin type-III domain, U-15N, 13C; 20mM d-Tris HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DOC _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DOC _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DOC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DOC _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DOC _struct.title 'Solution structure of the Fibronectin type-III domain of human Neural cell adhesion molecule 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DOC _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;Cell adhesion, Glycoprotein, fn3 domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 22 ? ILE A 26 ? TYR A 22 ILE A 26 A 2 ALA A 34 ? ASN A 39 ? ALA A 34 ASN A 39 A 3 MET A 75 ? LEU A 78 ? MET A 75 LEU A 78 B 1 LYS A 65 ? ARG A 68 ? LYS A 65 ARG A 68 B 2 HIS A 51 ? GLU A 58 ? HIS A 51 GLU A 58 B 3 THR A 86 ? ASN A 95 ? THR A 86 ASN A 95 B 4 GLY A 98 ? TYR A 102 ? GLY A 98 TYR A 102 C 1 LYS A 65 ? ARG A 68 ? LYS A 65 ARG A 68 C 2 HIS A 51 ? GLU A 58 ? HIS A 51 GLU A 58 C 3 THR A 86 ? ASN A 95 ? THR A 86 ASN A 95 C 4 GLU A 106 ? GLN A 109 ? GLU A 106 GLN A 109 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 22 ? N TYR A 22 O ASN A 39 ? O ASN A 39 A 2 3 N VAL A 36 ? N VAL A 36 O VAL A 76 ? O VAL A 76 B 1 2 O VAL A 67 ? O VAL A 67 N VAL A 54 ? N VAL A 54 B 2 3 N LYS A 57 ? N LYS A 57 O GLU A 88 ? O GLU A 88 B 3 4 N ASN A 95 ? N ASN A 95 O GLY A 98 ? O GLY A 98 C 1 2 O VAL A 67 ? O VAL A 67 N VAL A 54 ? N VAL A 54 C 2 3 N LYS A 57 ? N LYS A 57 O GLU A 88 ? O GLU A 88 C 3 4 N ILE A 89 ? N ILE A 89 O GLU A 106 ? O GLU A 106 # _database_PDB_matrix.entry_id 2DOC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DOC _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLY 119 119 119 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 8 ? ? -92.56 49.33 2 1 ASP A 42 ? ? -49.79 -18.59 3 1 HIS A 70 ? ? -100.65 42.55 4 1 LYS A 104 ? ? -39.71 114.60 5 1 VAL A 113 ? ? -34.60 133.17 6 2 SER A 2 ? ? -128.95 -59.94 7 2 ILE A 11 ? ? -132.34 -35.63 8 2 VAL A 17 ? ? -44.52 151.76 9 2 VAL A 24 ? ? -34.05 135.09 10 2 ALA A 34 ? ? -160.05 117.98 11 2 LYS A 40 ? ? -48.04 152.03 12 2 ASP A 42 ? ? -39.67 -33.24 13 2 VAL A 72 ? ? -92.75 30.14 14 2 LYS A 104 ? ? -40.79 108.71 15 2 ILE A 105 ? ? -36.88 122.79 16 2 VAL A 113 ? ? -35.36 116.22 17 3 GLN A 8 ? ? -38.38 -26.84 18 3 GLU A 9 ? ? -83.87 36.15 19 3 LEU A 12 ? ? -48.89 -19.82 20 3 ASP A 16 ? ? -133.08 -75.19 21 3 VAL A 24 ? ? -40.25 107.16 22 3 SER A 43 ? ? -117.73 75.60 23 3 ILE A 105 ? ? -38.80 124.92 24 3 VAL A 113 ? ? -34.02 132.74 25 4 GLU A 9 ? ? 40.45 25.04 26 4 VAL A 17 ? ? -37.05 153.02 27 4 LYS A 40 ? ? -48.62 152.51 28 4 GLN A 73 ? ? -40.00 161.25 29 4 ILE A 105 ? ? -34.56 123.35 30 4 VAL A 113 ? ? -33.93 133.15 31 4 SER A 118 ? ? -124.46 -54.88 32 5 GLN A 8 ? ? -87.87 47.74 33 5 PRO A 21 ? ? -69.84 -175.00 34 5 VAL A 24 ? ? -38.00 115.92 35 5 VAL A 72 ? ? -88.71 37.32 36 5 ASN A 80 ? ? 74.12 53.55 37 5 ILE A 105 ? ? -33.68 119.63 38 5 VAL A 113 ? ? -35.18 125.51 39 5 PRO A 116 ? ? -69.62 1.00 40 6 SER A 2 ? ? -112.69 57.53 41 6 SER A 3 ? ? 34.44 41.98 42 6 GLN A 8 ? ? 39.32 48.55 43 6 LEU A 12 ? ? -48.41 -19.97 44 6 ASP A 16 ? ? -111.55 -74.70 45 6 ASP A 42 ? ? -37.74 -37.06 46 6 VAL A 72 ? ? -85.73 31.47 47 6 THR A 110 ? ? -54.47 173.84 48 6 VAL A 113 ? ? -36.19 121.20 49 6 SER A 117 ? ? -54.69 91.78 50 7 SER A 3 ? ? -165.17 119.47 51 7 GLN A 8 ? ? -98.70 56.41 52 7 ASP A 16 ? ? -111.64 -74.16 53 7 SER A 43 ? ? -112.93 75.28 54 7 VAL A 72 ? ? -87.76 32.93 55 7 ILE A 105 ? ? -36.94 119.50 56 7 THR A 110 ? ? -52.15 170.32 57 7 VAL A 113 ? ? -33.87 131.87 58 7 PRO A 116 ? ? -69.81 1.68 59 8 ILE A 11 ? ? -130.68 -38.07 60 8 VAL A 17 ? ? -33.99 149.23 61 8 ALA A 34 ? ? -160.94 118.29 62 8 LYS A 40 ? ? -42.87 152.60 63 8 ASP A 42 ? ? -83.96 34.70 64 8 SER A 43 ? ? -168.06 105.10 65 8 VAL A 72 ? ? -86.41 35.86 66 8 LYS A 104 ? ? -38.50 126.98 67 8 VAL A 113 ? ? -34.24 130.64 68 9 ILE A 11 ? ? -133.23 -40.23 69 9 ASP A 16 ? ? -106.38 -74.93 70 9 PRO A 21 ? ? -69.71 -173.23 71 9 SER A 61 ? ? -58.62 172.69 72 9 VAL A 72 ? ? -84.64 39.57 73 9 ASN A 80 ? ? 74.04 46.92 74 9 ILE A 105 ? ? -36.06 125.91 75 9 VAL A 113 ? ? -34.18 128.35 76 9 SER A 117 ? ? -36.06 108.84 77 10 SER A 5 ? ? -64.74 97.89 78 10 ASP A 16 ? ? -104.58 -75.14 79 10 HIS A 70 ? ? -109.42 42.52 80 10 VAL A 72 ? ? -91.48 31.74 81 10 LYS A 104 ? ? -41.15 109.92 82 10 ILE A 105 ? ? -36.48 125.59 83 10 PRO A 116 ? ? -69.80 1.86 84 10 SER A 118 ? ? -41.43 150.24 85 11 ILE A 11 ? ? -132.12 -34.80 86 11 PRO A 21 ? ? -69.76 -177.78 87 11 VAL A 24 ? ? -34.42 106.20 88 11 SER A 61 ? ? -55.69 172.31 89 11 GLN A 73 ? ? -45.70 163.41 90 11 LYS A 104 ? ? -35.10 115.46 91 11 THR A 110 ? ? -49.89 170.79 92 11 VAL A 113 ? ? -38.13 138.51 93 12 GLN A 8 ? ? -39.00 -25.88 94 12 GLU A 9 ? ? -83.48 35.79 95 12 ASP A 42 ? ? -34.71 -35.05 96 12 GLN A 73 ? ? -38.81 159.03 97 12 LYS A 104 ? ? -39.10 113.45 98 12 VAL A 113 ? ? -35.18 102.94 99 12 SER A 114 ? ? 39.84 48.73 100 13 SER A 5 ? ? -62.42 78.43 101 13 GLN A 8 ? ? -38.60 -26.20 102 13 GLU A 9 ? ? -82.06 38.79 103 13 ASP A 16 ? ? -103.04 -75.01 104 13 PRO A 21 ? ? -69.78 -178.46 105 13 LYS A 57 ? ? -171.31 149.63 106 13 HIS A 70 ? ? -94.07 53.95 107 13 VAL A 72 ? ? -99.10 31.37 108 13 ILE A 105 ? ? -36.21 126.71 109 13 VAL A 113 ? ? -34.70 117.08 110 14 SER A 5 ? ? -49.66 153.37 111 14 TYR A 10 ? ? -36.55 -37.89 112 14 ILE A 11 ? ? -132.14 -33.76 113 14 SER A 69 ? ? -90.36 30.55 114 14 HIS A 70 ? ? 35.94 32.72 115 14 LYS A 104 ? ? -37.08 115.40 116 14 VAL A 113 ? ? -37.36 135.10 117 14 SER A 117 ? ? -43.96 99.53 118 15 GLU A 9 ? ? -85.37 31.37 119 15 VAL A 17 ? ? -45.96 152.94 120 15 LYS A 40 ? ? -39.06 153.94 121 15 SER A 61 ? ? -52.18 172.95 122 15 VAL A 72 ? ? -90.96 34.53 123 15 VAL A 113 ? ? -37.96 146.60 124 15 SER A 117 ? ? -35.12 142.50 125 16 SER A 6 ? ? -79.96 -70.52 126 16 ILE A 11 ? ? -131.42 -39.25 127 16 VAL A 17 ? ? -36.67 148.67 128 16 LYS A 40 ? ? -39.49 152.72 129 16 ASP A 42 ? ? -38.27 -35.00 130 16 VAL A 72 ? ? -97.31 32.95 131 16 LYS A 104 ? ? -38.35 115.27 132 16 VAL A 113 ? ? -34.59 112.57 133 17 ILE A 11 ? ? -130.08 -34.97 134 17 ASP A 16 ? ? -107.10 -75.04 135 17 GLN A 73 ? ? -42.92 166.61 136 17 ILE A 105 ? ? -34.87 118.46 137 17 VAL A 113 ? ? -35.43 121.01 138 18 SER A 6 ? ? -65.16 99.51 139 18 ILE A 11 ? ? -131.07 -39.62 140 18 VAL A 17 ? ? -44.81 150.84 141 18 PRO A 21 ? ? -69.79 -178.43 142 18 LYS A 40 ? ? -45.46 150.19 143 18 HIS A 70 ? ? 35.64 36.13 144 18 ASP A 101 ? ? -56.21 171.00 145 18 LYS A 104 ? ? -40.20 106.13 146 18 ILE A 105 ? ? -35.86 127.55 147 18 VAL A 113 ? ? -34.00 137.60 148 18 PRO A 116 ? ? -69.71 87.16 149 19 SER A 5 ? ? -82.56 46.22 150 19 GLU A 9 ? ? 47.04 25.50 151 19 ASP A 16 ? ? -107.78 -71.26 152 19 VAL A 24 ? ? -37.49 115.00 153 19 HIS A 70 ? ? -96.33 41.02 154 19 ASN A 80 ? ? 74.05 52.38 155 19 LYS A 104 ? ? -35.69 111.70 156 19 THR A 110 ? ? -48.61 171.48 157 19 VAL A 113 ? ? -31.01 102.77 158 19 SER A 114 ? ? 37.13 53.63 159 20 GLN A 8 ? ? 33.28 39.35 160 20 GLU A 9 ? ? -105.87 54.89 161 20 VAL A 24 ? ? -38.91 128.99 162 20 ALA A 34 ? ? -163.14 115.84 163 20 VAL A 113 ? ? -35.52 133.68 #