HEADER CELL ADHESION 28-APR-06 2DOC TITLE SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF HUMAN NEURAL TITLE 2 CELL ADHESION MOLECULE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN; COMPND 5 SYNONYM: N-CAM 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCAM2; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050719-17; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CELL ADHESION, GLYCOPROTEIN, FN3 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DOC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DOC 1 VERSN REVDAT 1 28-OCT-06 2DOC 0 JRNL AUTH M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE-III DOMAIN OF JRNL TITL 2 HUMAN NEURAL CELL ADHESION MOLECULE 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DOC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025650. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.14MM FIBRONECTIN TYPE-III REMARK 210 DOMAIN, U-15N, 13C; 20MM D-TRIS REMARK 210 HCL (PH 7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 8 49.33 -92.56 REMARK 500 1 ASP A 42 -18.59 -49.79 REMARK 500 1 HIS A 70 42.55 -100.65 REMARK 500 1 LYS A 104 114.60 -39.71 REMARK 500 1 VAL A 113 133.17 -34.60 REMARK 500 2 SER A 2 -59.94 -128.95 REMARK 500 2 ILE A 11 -35.63 -132.34 REMARK 500 2 VAL A 17 151.76 -44.52 REMARK 500 2 VAL A 24 135.09 -34.05 REMARK 500 2 ALA A 34 117.98 -160.05 REMARK 500 2 LYS A 40 152.03 -48.04 REMARK 500 2 ASP A 42 -33.24 -39.67 REMARK 500 2 VAL A 72 30.14 -92.75 REMARK 500 2 LYS A 104 108.71 -40.79 REMARK 500 2 ILE A 105 122.79 -36.88 REMARK 500 2 VAL A 113 116.22 -35.36 REMARK 500 3 GLN A 8 -26.84 -38.38 REMARK 500 3 GLU A 9 36.15 -83.87 REMARK 500 3 LEU A 12 -19.82 -48.89 REMARK 500 3 ASP A 16 -75.19 -133.08 REMARK 500 3 VAL A 24 107.16 -40.25 REMARK 500 3 SER A 43 75.60 -117.73 REMARK 500 3 ILE A 105 124.92 -38.80 REMARK 500 3 VAL A 113 132.74 -34.02 REMARK 500 4 GLU A 9 25.04 40.45 REMARK 500 4 VAL A 17 153.02 -37.05 REMARK 500 4 LYS A 40 152.51 -48.62 REMARK 500 4 GLN A 73 161.25 -40.00 REMARK 500 4 ILE A 105 123.35 -34.56 REMARK 500 4 VAL A 113 133.15 -33.93 REMARK 500 4 SER A 118 -54.88 -124.46 REMARK 500 5 GLN A 8 47.74 -87.87 REMARK 500 5 PRO A 21 -175.00 -69.84 REMARK 500 5 VAL A 24 115.92 -38.00 REMARK 500 5 VAL A 72 37.32 -88.71 REMARK 500 5 ASN A 80 53.55 74.12 REMARK 500 5 ILE A 105 119.63 -33.68 REMARK 500 5 VAL A 113 125.51 -35.18 REMARK 500 5 PRO A 116 1.00 -69.62 REMARK 500 6 SER A 2 57.53 -112.69 REMARK 500 6 SER A 3 41.98 34.44 REMARK 500 6 GLN A 8 48.55 39.32 REMARK 500 6 LEU A 12 -19.97 -48.41 REMARK 500 6 ASP A 16 -74.70 -111.55 REMARK 500 6 ASP A 42 -37.06 -37.74 REMARK 500 6 VAL A 72 31.47 -85.73 REMARK 500 6 THR A 110 173.84 -54.47 REMARK 500 6 VAL A 113 121.20 -36.19 REMARK 500 6 SER A 117 91.78 -54.69 REMARK 500 7 SER A 3 119.47 -165.17 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001927.1 RELATED DB: TARGETDB DBREF 2DOC A 8 113 UNP O15394 NCAM2_HUMAN 486 591 SEQADV 2DOC GLY A 1 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 2 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 3 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 4 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 5 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 6 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 7 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 114 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 115 UNP O15394 CLONING ARTIFACT SEQADV 2DOC PRO A 116 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 117 UNP O15394 CLONING ARTIFACT SEQADV 2DOC SER A 118 UNP O15394 CLONING ARTIFACT SEQADV 2DOC GLY A 119 UNP O15394 CLONING ARTIFACT SEQRES 1 A 119 GLY SER SER GLY SER SER GLY GLN GLU TYR ILE LEU ALA SEQRES 2 A 119 LEU ALA ASP VAL PRO SER SER PRO TYR GLY VAL LYS ILE SEQRES 3 A 119 ILE GLU LEU SER GLN THR THR ALA LYS VAL SER PHE ASN SEQRES 4 A 119 LYS PRO ASP SER HIS GLY GLY VAL PRO ILE HIS HIS TYR SEQRES 5 A 119 GLN VAL ASP VAL LYS GLU VAL ALA SER GLU ILE TRP LYS SEQRES 6 A 119 ILE VAL ARG SER HIS GLY VAL GLN THR MET VAL VAL LEU SEQRES 7 A 119 ASN ASN LEU GLU PRO ASN THR THR TYR GLU ILE ARG VAL SEQRES 8 A 119 ALA ALA VAL ASN GLY LYS GLY GLN GLY ASP TYR SER LYS SEQRES 9 A 119 ILE GLU ILE PHE GLN THR LEU PRO VAL SER GLY PRO SER SEQRES 10 A 119 SER GLY SHEET 1 A 3 TYR A 22 ILE A 26 0 SHEET 2 A 3 ALA A 34 ASN A 39 -1 O ASN A 39 N TYR A 22 SHEET 3 A 3 MET A 75 LEU A 78 -1 O VAL A 76 N VAL A 36 SHEET 1 B 4 LYS A 65 ARG A 68 0 SHEET 2 B 4 HIS A 51 GLU A 58 -1 N VAL A 54 O VAL A 67 SHEET 3 B 4 THR A 86 ASN A 95 -1 O GLU A 88 N LYS A 57 SHEET 4 B 4 GLY A 98 TYR A 102 -1 O GLY A 98 N ASN A 95 SHEET 1 C 4 LYS A 65 ARG A 68 0 SHEET 2 C 4 HIS A 51 GLU A 58 -1 N VAL A 54 O VAL A 67 SHEET 3 C 4 THR A 86 ASN A 95 -1 O GLU A 88 N LYS A 57 SHEET 4 C 4 GLU A 106 GLN A 109 -1 O GLU A 106 N ILE A 89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1