HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-APR-06 2DOG TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIMM FROM THERMUS TITLE 2 THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 16S RRNA-PROCESSING PROTEIN RIMM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RIEF FOLD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: RIMM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PC011033-04 KEYWDS BETA BARREL, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 2 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,E.MATSUMOTO,A.TATSUGUCHI,M.KAWAZOE,T.KAMINISHI,C.TAKEMOTO, AUTHOR 2 M.SHIROUZU,Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 5 01-MAY-24 2DOG 1 REMARK REVDAT 4 13-JUL-11 2DOG 1 VERSN REVDAT 3 24-FEB-09 2DOG 1 VERSN REVDAT 2 09-OCT-07 2DOG 1 JRNL REVDAT 1 17-APR-07 2DOG 0 JRNL AUTH S.SUZUKI,A.TATSUGUCHI,E.MATSUMOTO,M.KAWAZOE,T.KAMINISHI, JRNL AUTH 2 M.SHIROUZU,Y.MUTO,C.TAKEMOTO,S.YOKOYAMA JRNL TITL STRUCTURAL CHARACTERIZATION OF THE RIBOSOME MATURATION JRNL TITL 2 PROTEIN, RIMM JRNL REF J.BACTERIOL. V. 189 6397 2007 JRNL REFN ISSN 0021-9193 JRNL PMID 17616598 JRNL DOI 10.1128/JB.00024-07 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DOG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025654. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM 13C/15N-PROTEIN, 20MM REMARK 210 SODIUM PHOSPHATE (PH6.5), 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17, SPARKY 3.110 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 83.23 -59.13 REMARK 500 1 ALA A 14 166.11 -42.87 REMARK 500 1 GLU A 36 99.76 -60.55 REMARK 500 1 HIS A 38 -78.23 -117.58 REMARK 500 1 VAL A 60 98.78 -62.06 REMARK 500 1 ALA A 79 -32.80 -39.15 REMARK 500 1 LEU A 81 151.16 -38.02 REMARK 500 2 ARG A 2 45.98 -84.97 REMARK 500 2 TYR A 13 177.58 -53.17 REMARK 500 2 ALA A 14 168.18 -44.45 REMARK 500 2 GLU A 31 -36.43 -133.32 REMARK 500 2 GLU A 36 99.73 -60.47 REMARK 500 2 HIS A 38 -77.91 -115.99 REMARK 500 2 TYR A 47 141.79 -170.01 REMARK 500 3 ARG A 2 82.56 -66.39 REMARK 500 3 TYR A 13 175.19 -55.32 REMARK 500 3 ALA A 14 161.96 -40.68 REMARK 500 3 LYS A 16 -30.98 -36.11 REMARK 500 3 GLU A 24 157.13 -40.67 REMARK 500 3 GLU A 36 99.81 -59.40 REMARK 500 3 HIS A 38 -78.50 -112.65 REMARK 500 4 ALA A 14 159.44 -43.73 REMARK 500 4 LYS A 16 -27.35 -39.53 REMARK 500 4 GLU A 24 154.07 -49.64 REMARK 500 4 GLU A 36 99.67 -60.37 REMARK 500 4 HIS A 38 -78.19 -116.29 REMARK 500 4 VAL A 60 97.66 -67.20 REMARK 500 5 ARG A 2 96.14 -67.54 REMARK 500 5 TYR A 13 176.43 -51.56 REMARK 500 5 ALA A 14 161.41 -40.75 REMARK 500 5 LYS A 16 -28.22 -37.99 REMARK 500 5 GLU A 36 99.71 -59.27 REMARK 500 5 HIS A 38 -78.55 -110.63 REMARK 500 6 TYR A 13 177.25 -50.84 REMARK 500 6 ALA A 14 161.66 -43.14 REMARK 500 6 LYS A 16 -30.71 -35.88 REMARK 500 6 GLU A 24 156.65 -48.89 REMARK 500 6 GLU A 36 99.65 -60.51 REMARK 500 6 HIS A 38 -78.60 -115.93 REMARK 500 6 TYR A 47 140.47 -170.01 REMARK 500 6 VAL A 60 97.07 -49.29 REMARK 500 6 LEU A 81 150.62 -37.44 REMARK 500 7 TYR A 13 176.68 -59.66 REMARK 500 7 ALA A 14 162.71 -40.89 REMARK 500 7 LYS A 16 -27.66 -37.82 REMARK 500 7 GLU A 24 155.15 -38.33 REMARK 500 7 GLU A 36 99.66 -60.01 REMARK 500 7 HIS A 38 -78.61 -115.85 REMARK 500 7 VAL A 60 99.62 -59.06 REMARK 500 8 TYR A 13 178.68 -49.55 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000786.3 RELATED DB: TARGETDB DBREF 2DOG A 1 85 UNP Q5SJH5 RIMM_THET8 1 85 SEQRES 1 A 85 MET ARG LEU VAL GLU ILE GLY ARG PHE GLY ALA PRO TYR SEQRES 2 A 85 ALA LEU LYS GLY GLY LEU ARG PHE ARG GLY GLU PRO VAL SEQRES 3 A 85 VAL LEU HIS LEU GLU ARG VAL TYR VAL GLU GLY HIS GLY SEQRES 4 A 85 TRP ARG ALA ILE GLU ASP LEU TYR ARG VAL GLY GLU GLU SEQRES 5 A 85 LEU VAL VAL HIS LEU ALA GLY VAL THR ASP ARG THR LEU SEQRES 6 A 85 ALA GLU ALA LEU VAL GLY LEU ARG VAL TYR ALA GLU VAL SEQRES 7 A 85 ALA ASP LEU PRO PRO LEU GLU HELIX 1 1 PRO A 25 HIS A 29 5 5 HELIX 2 2 ARG A 63 GLU A 67 1 5 SHEET 1 A 6 LEU A 3 PRO A 12 0 SHEET 2 A 6 LEU A 19 GLY A 23 -1 SHEET 3 A 6 GLU A 52 LEU A 57 -1 SHEET 4 A 6 GLY A 39 VAL A 49 -1 SHEET 5 A 6 ARG A 32 VAL A 35 -1 SHEET 6 A 6 ARG A 73 GLU A 77 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1