data_2DPB # _entry.id 2DPB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DPB pdb_00002dpb 10.2210/pdb2dpb/pdb NDB BD0096 ? ? RCSB RCSB025683 ? ? WWPDB D_1000025683 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DP7 . unspecified PDB 2DPC . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DPB _pdbx_database_status.recvd_initial_deposition_date 2006-05-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Juan, E.C.M.' 1 'Kondo, J.' 2 'Kurihara, T.' 3 'Ito, T.' 4 'Ueno, Y.' 5 'Matsuda, A.' 6 'Takenaka, A.' 7 # _citation.id primary _citation.title ;Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 1969 _citation.page_last 1977 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17341465 _citation.pdbx_database_id_DOI 10.1093/nar/gkl821 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Juan, E.C.M.' 1 ? primary 'Kondo, J.' 2 ? primary 'Kurihara, T.' 3 ? primary 'Ito, T.' 4 ? primary 'Ueno, Y.' 5 ? primary 'Matsuda, A.' 6 ? primary 'Takenaka, A.' 7 ? # _cell.entry_id 2DPB _cell.length_a 25.539 _cell.length_b 40.833 _cell.length_c 64.456 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DPB _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3') ; 3649.366 2 ? ? ? ? 2 non-polymer syn '(6-AMINOHEXYL)CARBAMIC ACID' 160.214 2 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 water nat water 18.015 236 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DU)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATUCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DU n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This DNA dodecamer is a synthetic construct.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DPB _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CGCGAATUCGCG _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 2DPB _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DPB A 1 ? 12 ? 2DPB 1 ? 12 ? 1 12 2 1 2DPB B 1 ? 12 ? 2DPB 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CMY non-polymer . '(6-AMINOHEXYL)CARBAMIC ACID' ? 'C7 H16 N2 O2' 160.214 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DU 'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O8 P' 308.182 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # _exptl.entry_id 2DPB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;20mM sodium cacodylate, pH 6.0, 40mM potassium chloride, 6mM spermine tetrahydrochloride and 5%(v/v) MPD, equilibrated against 35% (v/v) MPD, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 'potassium chloride' ? ? ? 1 3 1 'spermine tetrahydrochloride' ? ? ? 1 4 1 MPD ? ? ? 1 5 1 HOH ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 'potassium chloride' ? ? ? 1 8 2 MPD ? ? ? 1 9 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-01-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-18B' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-18B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 2DPB _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 19.463 _reflns.d_resolution_high 1.500 _reflns.number_obs 11296 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.256 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DPB _refine.ls_number_reflns_obs 10951 _refine.ls_number_reflns_all 11265 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1934 _refine.ls_R_factor_R_free 0.2449 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1136 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -1.466 _refine.aniso_B[2][2] -1.774 _refine.aniso_B[3][3] 3.239 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;The value of the item "Number reflections (observed)" is the number of reflections used in refinement. This value excludes the reflections that have sigma(F) less than 3.0. ; _refine.pdbx_starting_model 'PDB ENTRY 355D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Maximum Likelihood' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 484 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 236 _refine_hist.number_atoms_total 741 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 10 # _struct.entry_id 2DPB _struct.title ;Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DPB _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;modified nucleotide, 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine, B-DNA, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DU 8 C5 ? ? ? 1_555 C CMY . C1Y ? ? A DU 8 A CMY 108 1_555 ? ? ? ? ? ? ? 1.531 ? ? covale2 covale none ? B DU 8 C5 ? ? ? 1_555 E CMY . C1Y ? ? B DU 20 B CMY 120 1_555 ? ? ? ? ? ? ? 1.534 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DU 8 N3 ? ? A DA 5 B DU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DU 8 O4 ? ? A DA 5 B DU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DU 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DU 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B K 1 ? 6 'BINDING SITE FOR RESIDUE K B 1' AC2 Software A CMY 108 ? 10 'BINDING SITE FOR RESIDUE CMY A 108' AC3 Software B CMY 120 ? 4 'BINDING SITE FOR RESIDUE CMY B 120' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DT A 7 ? DT A 7 . ? 1_555 ? 2 AC1 6 DU A 8 ? DU A 8 . ? 1_555 ? 3 AC1 6 DT B 7 ? DT B 19 . ? 1_555 ? 4 AC1 6 DU B 8 ? DU B 20 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH B 127 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH B 135 . ? 1_555 ? 7 AC2 10 DC A 1 ? DC A 1 . ? 3_645 ? 8 AC2 10 DT A 7 ? DT A 7 . ? 1_555 ? 9 AC2 10 DU A 8 ? DU A 8 . ? 1_555 ? 10 AC2 10 HOH F . ? HOH A 118 . ? 1_555 ? 11 AC2 10 DG B 4 ? DG B 16 . ? 4_546 ? 12 AC2 10 DG B 12 ? DG B 24 . ? 3_645 ? 13 AC2 10 HOH G . ? HOH B 121 . ? 4_546 ? 14 AC2 10 HOH G . ? HOH B 141 . ? 4_546 ? 15 AC2 10 HOH G . ? HOH B 184 . ? 4_446 ? 16 AC2 10 HOH G . ? HOH B 212 . ? 4_446 ? 17 AC3 4 DT B 7 ? DT B 19 . ? 1_555 ? 18 AC3 4 DU B 8 ? DU B 20 . ? 1_555 ? 19 AC3 4 HOH G . ? HOH B 138 . ? 1_555 ? 20 AC3 4 HOH G . ? HOH B 155 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DPB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DPB _atom_sites.fract_transf_matrix[1][1] 0.039156 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024490 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015514 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 DU 8 8 8 DU THY A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n B 1 1 DC 1 13 13 DC CYT B . n B 1 2 DG 2 14 14 DG GUA B . n B 1 3 DC 3 15 15 DC CYT B . n B 1 4 DG 4 16 16 DG GUA B . n B 1 5 DA 5 17 17 DA ADE B . n B 1 6 DA 6 18 18 DA ADE B . n B 1 7 DT 7 19 19 DT THY B . n B 1 8 DU 8 20 20 DU THY B . n B 1 9 DC 9 21 21 DC CYT B . n B 1 10 DG 10 22 22 DG GUA B . n B 1 11 DC 11 23 23 DC CYT B . n B 1 12 DG 12 24 24 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMY 1 108 8 CMY THY A . D 3 K 1 1 1 K K1 B . E 2 CMY 1 120 20 CMY THY B . F 4 HOH 1 109 2 HOH HOH A . F 4 HOH 2 110 3 HOH HOH A . F 4 HOH 3 111 4 HOH HOH A . F 4 HOH 4 112 8 HOH HOH A . F 4 HOH 5 113 9 HOH HOH A . F 4 HOH 6 114 10 HOH HOH A . F 4 HOH 7 115 13 HOH HOH A . F 4 HOH 8 116 14 HOH HOH A . F 4 HOH 9 117 15 HOH HOH A . F 4 HOH 10 118 16 HOH HOH A . F 4 HOH 11 119 19 HOH HOH A . F 4 HOH 12 120 27 HOH HOH A . F 4 HOH 13 121 29 HOH HOH A . F 4 HOH 14 122 30 HOH HOH A . F 4 HOH 15 123 32 HOH HOH A . F 4 HOH 16 124 33 HOH HOH A . F 4 HOH 17 125 38 HOH HOH A . F 4 HOH 18 126 41 HOH HOH A . F 4 HOH 19 127 45 HOH HOH A . F 4 HOH 20 128 48 HOH HOH A . F 4 HOH 21 129 50 HOH HOH A . F 4 HOH 22 130 52 HOH HOH A . F 4 HOH 23 131 53 HOH HOH A . F 4 HOH 24 132 54 HOH HOH A . F 4 HOH 25 133 56 HOH HOH A . F 4 HOH 26 134 57 HOH HOH A . F 4 HOH 27 135 60 HOH HOH A . F 4 HOH 28 136 61 HOH HOH A . F 4 HOH 29 137 62 HOH HOH A . F 4 HOH 30 138 67 HOH HOH A . F 4 HOH 31 139 73 HOH HOH A . F 4 HOH 32 140 75 HOH HOH A . F 4 HOH 33 141 78 HOH HOH A . F 4 HOH 34 142 80 HOH HOH A . F 4 HOH 35 143 81 HOH HOH A . F 4 HOH 36 144 83 HOH HOH A . F 4 HOH 37 145 89 HOH HOH A . F 4 HOH 38 146 92 HOH HOH A . F 4 HOH 39 147 93 HOH HOH A . F 4 HOH 40 148 98 HOH HOH A . F 4 HOH 41 149 99 HOH HOH A . F 4 HOH 42 150 102 HOH HOH A . F 4 HOH 43 151 105 HOH HOH A . F 4 HOH 44 152 106 HOH HOH A . F 4 HOH 45 153 107 HOH HOH A . F 4 HOH 46 154 110 HOH HOH A . F 4 HOH 47 155 111 HOH HOH A . F 4 HOH 48 156 115 HOH HOH A . F 4 HOH 49 157 116 HOH HOH A . F 4 HOH 50 158 121 HOH HOH A . F 4 HOH 51 159 123 HOH HOH A . F 4 HOH 52 160 128 HOH HOH A . F 4 HOH 53 161 129 HOH HOH A . F 4 HOH 54 162 131 HOH HOH A . F 4 HOH 55 163 134 HOH HOH A . F 4 HOH 56 164 136 HOH HOH A . F 4 HOH 57 165 137 HOH HOH A . F 4 HOH 58 166 138 HOH HOH A . F 4 HOH 59 167 139 HOH HOH A . F 4 HOH 60 168 142 HOH HOH A . F 4 HOH 61 169 143 HOH HOH A . F 4 HOH 62 170 146 HOH HOH A . F 4 HOH 63 171 147 HOH HOH A . F 4 HOH 64 172 152 HOH HOH A . F 4 HOH 65 173 155 HOH HOH A . F 4 HOH 66 174 159 HOH HOH A . F 4 HOH 67 175 160 HOH HOH A . F 4 HOH 68 176 164 HOH HOH A . F 4 HOH 69 177 169 HOH HOH A . F 4 HOH 70 178 176 HOH HOH A . F 4 HOH 71 179 177 HOH HOH A . F 4 HOH 72 180 178 HOH HOH A . F 4 HOH 73 181 182 HOH HOH A . F 4 HOH 74 182 187 HOH HOH A . F 4 HOH 75 183 188 HOH HOH A . F 4 HOH 76 184 191 HOH HOH A . F 4 HOH 77 185 192 HOH HOH A . F 4 HOH 78 186 205 HOH HOH A . F 4 HOH 79 187 206 HOH HOH A . F 4 HOH 80 188 207 HOH HOH A . F 4 HOH 81 189 208 HOH HOH A . F 4 HOH 82 190 218 HOH HOH A . F 4 HOH 83 191 220 HOH HOH A . F 4 HOH 84 192 223 HOH HOH A . F 4 HOH 85 193 225 HOH HOH A . F 4 HOH 86 194 227 HOH HOH A . F 4 HOH 87 195 228 HOH HOH A . F 4 HOH 88 196 233 HOH HOH A . F 4 HOH 89 197 234 HOH HOH A . F 4 HOH 90 198 235 HOH HOH A . F 4 HOH 91 199 237 HOH HOH A . F 4 HOH 92 200 238 HOH HOH A . F 4 HOH 93 201 239 HOH HOH A . F 4 HOH 94 202 240 HOH HOH A . F 4 HOH 95 203 241 HOH HOH A . F 4 HOH 96 204 244 HOH HOH A . F 4 HOH 97 205 245 HOH HOH A . F 4 HOH 98 206 247 HOH HOH A . F 4 HOH 99 207 249 HOH HOH A . F 4 HOH 100 208 250 HOH HOH A . F 4 HOH 101 209 252 HOH HOH A . F 4 HOH 102 210 253 HOH HOH A . F 4 HOH 103 211 254 HOH HOH A . F 4 HOH 104 212 255 HOH HOH A . F 4 HOH 105 213 259 HOH HOH A . F 4 HOH 106 214 260 HOH HOH A . F 4 HOH 107 215 261 HOH HOH A . F 4 HOH 108 216 262 HOH HOH A . F 4 HOH 109 217 263 HOH HOH A . F 4 HOH 110 218 266 HOH HOH A . F 4 HOH 111 219 269 HOH HOH A . F 4 HOH 112 220 270 HOH HOH A . F 4 HOH 113 221 272 HOH HOH A . F 4 HOH 114 222 273 HOH HOH A . G 4 HOH 1 121 5 HOH HOH B . G 4 HOH 2 122 6 HOH HOH B . G 4 HOH 3 123 7 HOH HOH B . G 4 HOH 4 124 11 HOH HOH B . G 4 HOH 5 125 12 HOH HOH B . G 4 HOH 6 126 17 HOH HOH B . G 4 HOH 7 127 18 HOH HOH B . G 4 HOH 8 128 20 HOH HOH B . G 4 HOH 9 129 21 HOH HOH B . G 4 HOH 10 130 22 HOH HOH B . G 4 HOH 11 131 23 HOH HOH B . G 4 HOH 12 132 24 HOH HOH B . G 4 HOH 13 133 25 HOH HOH B . G 4 HOH 14 134 26 HOH HOH B . G 4 HOH 15 135 28 HOH HOH B . G 4 HOH 16 136 31 HOH HOH B . G 4 HOH 17 137 34 HOH HOH B . G 4 HOH 18 138 35 HOH HOH B . G 4 HOH 19 139 36 HOH HOH B . G 4 HOH 20 140 37 HOH HOH B . G 4 HOH 21 141 39 HOH HOH B . G 4 HOH 22 142 40 HOH HOH B . G 4 HOH 23 143 42 HOH HOH B . G 4 HOH 24 144 44 HOH HOH B . G 4 HOH 25 145 47 HOH HOH B . G 4 HOH 26 146 49 HOH HOH B . G 4 HOH 27 147 51 HOH HOH B . G 4 HOH 28 148 55 HOH HOH B . G 4 HOH 29 149 58 HOH HOH B . G 4 HOH 30 150 59 HOH HOH B . G 4 HOH 31 151 63 HOH HOH B . G 4 HOH 32 152 65 HOH HOH B . G 4 HOH 33 153 66 HOH HOH B . G 4 HOH 34 154 68 HOH HOH B . G 4 HOH 35 155 69 HOH HOH B . G 4 HOH 36 156 71 HOH HOH B . G 4 HOH 37 157 72 HOH HOH B . G 4 HOH 38 158 74 HOH HOH B . G 4 HOH 39 159 76 HOH HOH B . G 4 HOH 40 160 77 HOH HOH B . G 4 HOH 41 161 79 HOH HOH B . G 4 HOH 42 162 82 HOH HOH B . G 4 HOH 43 163 84 HOH HOH B . G 4 HOH 44 164 85 HOH HOH B . G 4 HOH 45 165 88 HOH HOH B . G 4 HOH 46 166 91 HOH HOH B . G 4 HOH 47 167 94 HOH HOH B . G 4 HOH 48 168 96 HOH HOH B . G 4 HOH 49 169 97 HOH HOH B . G 4 HOH 50 170 100 HOH HOH B . G 4 HOH 51 171 101 HOH HOH B . G 4 HOH 52 172 104 HOH HOH B . G 4 HOH 53 173 112 HOH HOH B . G 4 HOH 54 174 113 HOH HOH B . G 4 HOH 55 175 114 HOH HOH B . G 4 HOH 56 176 118 HOH HOH B . G 4 HOH 57 177 120 HOH HOH B . G 4 HOH 58 178 124 HOH HOH B . G 4 HOH 59 179 126 HOH HOH B . G 4 HOH 60 180 130 HOH HOH B . G 4 HOH 61 181 132 HOH HOH B . G 4 HOH 62 182 133 HOH HOH B . G 4 HOH 63 183 135 HOH HOH B . G 4 HOH 64 184 141 HOH HOH B . G 4 HOH 65 185 144 HOH HOH B . G 4 HOH 66 186 145 HOH HOH B . G 4 HOH 67 187 148 HOH HOH B . G 4 HOH 68 188 149 HOH HOH B . G 4 HOH 69 189 150 HOH HOH B . G 4 HOH 70 190 151 HOH HOH B . G 4 HOH 71 191 154 HOH HOH B . G 4 HOH 72 192 156 HOH HOH B . G 4 HOH 73 193 157 HOH HOH B . G 4 HOH 74 194 158 HOH HOH B . G 4 HOH 75 195 161 HOH HOH B . G 4 HOH 76 196 162 HOH HOH B . G 4 HOH 77 197 163 HOH HOH B . G 4 HOH 78 198 165 HOH HOH B . G 4 HOH 79 199 166 HOH HOH B . G 4 HOH 80 200 167 HOH HOH B . G 4 HOH 81 201 168 HOH HOH B . G 4 HOH 82 202 170 HOH HOH B . G 4 HOH 83 203 171 HOH HOH B . G 4 HOH 84 204 172 HOH HOH B . G 4 HOH 85 205 173 HOH HOH B . G 4 HOH 86 206 179 HOH HOH B . G 4 HOH 87 207 181 HOH HOH B . G 4 HOH 88 208 183 HOH HOH B . G 4 HOH 89 209 189 HOH HOH B . G 4 HOH 90 210 194 HOH HOH B . G 4 HOH 91 211 195 HOH HOH B . G 4 HOH 92 212 196 HOH HOH B . G 4 HOH 93 213 197 HOH HOH B . G 4 HOH 94 214 198 HOH HOH B . G 4 HOH 95 215 199 HOH HOH B . G 4 HOH 96 216 200 HOH HOH B . G 4 HOH 97 217 202 HOH HOH B . G 4 HOH 98 218 204 HOH HOH B . G 4 HOH 99 219 209 HOH HOH B . G 4 HOH 100 220 210 HOH HOH B . G 4 HOH 101 221 211 HOH HOH B . G 4 HOH 102 222 212 HOH HOH B . G 4 HOH 103 223 215 HOH HOH B . G 4 HOH 104 224 216 HOH HOH B . G 4 HOH 105 225 217 HOH HOH B . G 4 HOH 106 226 224 HOH HOH B . G 4 HOH 107 227 226 HOH HOH B . G 4 HOH 108 228 229 HOH HOH B . G 4 HOH 109 229 230 HOH HOH B . G 4 HOH 110 230 231 HOH HOH B . G 4 HOH 111 231 232 HOH HOH B . G 4 HOH 112 232 236 HOH HOH B . G 4 HOH 113 233 248 HOH HOH B . G 4 HOH 114 234 251 HOH HOH B . G 4 HOH 115 235 256 HOH HOH B . G 4 HOH 116 236 257 HOH HOH B . G 4 HOH 117 237 258 HOH HOH B . G 4 HOH 118 238 264 HOH HOH B . G 4 HOH 119 239 265 HOH HOH B . G 4 HOH 120 240 267 HOH HOH B . G 4 HOH 121 241 268 HOH HOH B . G 4 HOH 122 242 271 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-17 2 'Structure model' 1 1 2007-12-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq.db_align_beg' 5 4 'Structure model' '_struct_ref_seq.db_align_end' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.1 ? 4 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 9 ? ? 0.062 'SIDE CHAIN' 2 1 DC A 11 ? ? 0.061 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 0 B CMY 120 ? C4Y ? E CMY ? C4Y 2 1 N 0 B CMY 120 ? C5Y ? E CMY ? C5Y 3 1 N 0 B CMY 120 ? C6Y ? E CMY ? C6Y 4 1 N 0 B CMY 120 ? C7Y ? E CMY ? C7Y 5 1 N 0 B CMY 120 ? N2Y ? E CMY ? N2Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CMY O1Y O N N 1 CMY C1Y C N N 2 CMY N1Y N N N 3 CMY C2Y C N N 4 CMY C3Y C N N 5 CMY C4Y C N N 6 CMY C5Y C N N 7 CMY C6Y C N N 8 CMY C7Y C N N 9 CMY N2Y N N N 10 CMY O1 O N N 11 CMY H1Y H N N 12 CMY H1 H N N 13 CMY H2Y1 H N N 14 CMY H2Y2 H N N 15 CMY H3Y1 H N N 16 CMY H3Y2 H N N 17 CMY H4Y1 H N N 18 CMY H4Y2 H N N 19 CMY H5Y1 H N N 20 CMY H5Y2 H N N 21 CMY H6Y1 H N N 22 CMY H6Y2 H N N 23 CMY H7Y1 H N N 24 CMY H7Y2 H N N 25 CMY H11 H N N 26 CMY H12 H N N 27 DA OP3 O N N 28 DA P P N N 29 DA OP1 O N N 30 DA OP2 O N N 31 DA "O5'" O N N 32 DA "C5'" C N N 33 DA "C4'" C N R 34 DA "O4'" O N N 35 DA "C3'" C N S 36 DA "O3'" O N N 37 DA "C2'" C N N 38 DA "C1'" C N R 39 DA N9 N Y N 40 DA C8 C Y N 41 DA N7 N Y N 42 DA C5 C Y N 43 DA C6 C Y N 44 DA N6 N N N 45 DA N1 N Y N 46 DA C2 C Y N 47 DA N3 N Y N 48 DA C4 C Y N 49 DA HOP3 H N N 50 DA HOP2 H N N 51 DA "H5'" H N N 52 DA "H5''" H N N 53 DA "H4'" H N N 54 DA "H3'" H N N 55 DA "HO3'" H N N 56 DA "H2'" H N N 57 DA "H2''" H N N 58 DA "H1'" H N N 59 DA H8 H N N 60 DA H61 H N N 61 DA H62 H N N 62 DA H2 H N N 63 DC OP3 O N N 64 DC P P N N 65 DC OP1 O N N 66 DC OP2 O N N 67 DC "O5'" O N N 68 DC "C5'" C N N 69 DC "C4'" C N R 70 DC "O4'" O N N 71 DC "C3'" C N S 72 DC "O3'" O N N 73 DC "C2'" C N N 74 DC "C1'" C N R 75 DC N1 N N N 76 DC C2 C N N 77 DC O2 O N N 78 DC N3 N N N 79 DC C4 C N N 80 DC N4 N N N 81 DC C5 C N N 82 DC C6 C N N 83 DC HOP3 H N N 84 DC HOP2 H N N 85 DC "H5'" H N N 86 DC "H5''" H N N 87 DC "H4'" H N N 88 DC "H3'" H N N 89 DC "HO3'" H N N 90 DC "H2'" H N N 91 DC "H2''" H N N 92 DC "H1'" H N N 93 DC H41 H N N 94 DC H42 H N N 95 DC H5 H N N 96 DC H6 H N N 97 DG OP3 O N N 98 DG P P N N 99 DG OP1 O N N 100 DG OP2 O N N 101 DG "O5'" O N N 102 DG "C5'" C N N 103 DG "C4'" C N R 104 DG "O4'" O N N 105 DG "C3'" C N S 106 DG "O3'" O N N 107 DG "C2'" C N N 108 DG "C1'" C N R 109 DG N9 N Y N 110 DG C8 C Y N 111 DG N7 N Y N 112 DG C5 C Y N 113 DG C6 C N N 114 DG O6 O N N 115 DG N1 N N N 116 DG C2 C N N 117 DG N2 N N N 118 DG N3 N N N 119 DG C4 C Y N 120 DG HOP3 H N N 121 DG HOP2 H N N 122 DG "H5'" H N N 123 DG "H5''" H N N 124 DG "H4'" H N N 125 DG "H3'" H N N 126 DG "HO3'" H N N 127 DG "H2'" H N N 128 DG "H2''" H N N 129 DG "H1'" H N N 130 DG H8 H N N 131 DG H1 H N N 132 DG H21 H N N 133 DG H22 H N N 134 DT OP3 O N N 135 DT P P N N 136 DT OP1 O N N 137 DT OP2 O N N 138 DT "O5'" O N N 139 DT "C5'" C N N 140 DT "C4'" C N R 141 DT "O4'" O N N 142 DT "C3'" C N S 143 DT "O3'" O N N 144 DT "C2'" C N N 145 DT "C1'" C N R 146 DT N1 N N N 147 DT C2 C N N 148 DT O2 O N N 149 DT N3 N N N 150 DT C4 C N N 151 DT O4 O N N 152 DT C5 C N N 153 DT C7 C N N 154 DT C6 C N N 155 DT HOP3 H N N 156 DT HOP2 H N N 157 DT "H5'" H N N 158 DT "H5''" H N N 159 DT "H4'" H N N 160 DT "H3'" H N N 161 DT "HO3'" H N N 162 DT "H2'" H N N 163 DT "H2''" H N N 164 DT "H1'" H N N 165 DT H3 H N N 166 DT H71 H N N 167 DT H72 H N N 168 DT H73 H N N 169 DT H6 H N N 170 DU OP3 O N N 171 DU P P N N 172 DU OP1 O N N 173 DU OP2 O N N 174 DU "O5'" O N N 175 DU "C5'" C N N 176 DU "C4'" C N R 177 DU "O4'" O N N 178 DU "C3'" C N S 179 DU "O3'" O N N 180 DU "C2'" C N N 181 DU "C1'" C N R 182 DU N1 N N N 183 DU C2 C N N 184 DU O2 O N N 185 DU N3 N N N 186 DU C4 C N N 187 DU O4 O N N 188 DU C5 C N N 189 DU C6 C N N 190 DU HOP3 H N N 191 DU HOP2 H N N 192 DU "H5'" H N N 193 DU "H5''" H N N 194 DU "H4'" H N N 195 DU "H3'" H N N 196 DU "HO3'" H N N 197 DU "H2'" H N N 198 DU "H2''" H N N 199 DU "H1'" H N N 200 DU H3 H N N 201 DU H5 H N N 202 DU H6 H N N 203 HOH O O N N 204 HOH H1 H N N 205 HOH H2 H N N 206 K K K N N 207 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CMY O1Y C1Y sing N N 1 CMY O1Y H1Y sing N N 2 CMY C1Y N1Y sing N N 3 CMY C1Y O1 doub N N 4 CMY N1Y C2Y sing N N 5 CMY N1Y H1 sing N N 6 CMY C2Y C3Y sing N N 7 CMY C2Y H2Y1 sing N N 8 CMY C2Y H2Y2 sing N N 9 CMY C3Y C4Y sing N N 10 CMY C3Y H3Y1 sing N N 11 CMY C3Y H3Y2 sing N N 12 CMY C4Y C5Y sing N N 13 CMY C4Y H4Y1 sing N N 14 CMY C4Y H4Y2 sing N N 15 CMY C5Y C6Y sing N N 16 CMY C5Y H5Y1 sing N N 17 CMY C5Y H5Y2 sing N N 18 CMY C6Y C7Y sing N N 19 CMY C6Y H6Y1 sing N N 20 CMY C6Y H6Y2 sing N N 21 CMY C7Y N2Y sing N N 22 CMY C7Y H7Y1 sing N N 23 CMY C7Y H7Y2 sing N N 24 CMY N2Y H11 sing N N 25 CMY N2Y H12 sing N N 26 DA OP3 P sing N N 27 DA OP3 HOP3 sing N N 28 DA P OP1 doub N N 29 DA P OP2 sing N N 30 DA P "O5'" sing N N 31 DA OP2 HOP2 sing N N 32 DA "O5'" "C5'" sing N N 33 DA "C5'" "C4'" sing N N 34 DA "C5'" "H5'" sing N N 35 DA "C5'" "H5''" sing N N 36 DA "C4'" "O4'" sing N N 37 DA "C4'" "C3'" sing N N 38 DA "C4'" "H4'" sing N N 39 DA "O4'" "C1'" sing N N 40 DA "C3'" "O3'" sing N N 41 DA "C3'" "C2'" sing N N 42 DA "C3'" "H3'" sing N N 43 DA "O3'" "HO3'" sing N N 44 DA "C2'" "C1'" sing N N 45 DA "C2'" "H2'" sing N N 46 DA "C2'" "H2''" sing N N 47 DA "C1'" N9 sing N N 48 DA "C1'" "H1'" sing N N 49 DA N9 C8 sing Y N 50 DA N9 C4 sing Y N 51 DA C8 N7 doub Y N 52 DA C8 H8 sing N N 53 DA N7 C5 sing Y N 54 DA C5 C6 sing Y N 55 DA C5 C4 doub Y N 56 DA C6 N6 sing N N 57 DA C6 N1 doub Y N 58 DA N6 H61 sing N N 59 DA N6 H62 sing N N 60 DA N1 C2 sing Y N 61 DA C2 N3 doub Y N 62 DA C2 H2 sing N N 63 DA N3 C4 sing Y N 64 DC OP3 P sing N N 65 DC OP3 HOP3 sing N N 66 DC P OP1 doub N N 67 DC P OP2 sing N N 68 DC P "O5'" sing N N 69 DC OP2 HOP2 sing N N 70 DC "O5'" "C5'" sing N N 71 DC "C5'" "C4'" sing N N 72 DC "C5'" "H5'" sing N N 73 DC "C5'" "H5''" sing N N 74 DC "C4'" "O4'" sing N N 75 DC "C4'" "C3'" sing N N 76 DC "C4'" "H4'" sing N N 77 DC "O4'" "C1'" sing N N 78 DC "C3'" "O3'" sing N N 79 DC "C3'" "C2'" sing N N 80 DC "C3'" "H3'" sing N N 81 DC "O3'" "HO3'" sing N N 82 DC "C2'" "C1'" sing N N 83 DC "C2'" "H2'" sing N N 84 DC "C2'" "H2''" sing N N 85 DC "C1'" N1 sing N N 86 DC "C1'" "H1'" sing N N 87 DC N1 C2 sing N N 88 DC N1 C6 sing N N 89 DC C2 O2 doub N N 90 DC C2 N3 sing N N 91 DC N3 C4 doub N N 92 DC C4 N4 sing N N 93 DC C4 C5 sing N N 94 DC N4 H41 sing N N 95 DC N4 H42 sing N N 96 DC C5 C6 doub N N 97 DC C5 H5 sing N N 98 DC C6 H6 sing N N 99 DG OP3 P sing N N 100 DG OP3 HOP3 sing N N 101 DG P OP1 doub N N 102 DG P OP2 sing N N 103 DG P "O5'" sing N N 104 DG OP2 HOP2 sing N N 105 DG "O5'" "C5'" sing N N 106 DG "C5'" "C4'" sing N N 107 DG "C5'" "H5'" sing N N 108 DG "C5'" "H5''" sing N N 109 DG "C4'" "O4'" sing N N 110 DG "C4'" "C3'" sing N N 111 DG "C4'" "H4'" sing N N 112 DG "O4'" "C1'" sing N N 113 DG "C3'" "O3'" sing N N 114 DG "C3'" "C2'" sing N N 115 DG "C3'" "H3'" sing N N 116 DG "O3'" "HO3'" sing N N 117 DG "C2'" "C1'" sing N N 118 DG "C2'" "H2'" sing N N 119 DG "C2'" "H2''" sing N N 120 DG "C1'" N9 sing N N 121 DG "C1'" "H1'" sing N N 122 DG N9 C8 sing Y N 123 DG N9 C4 sing Y N 124 DG C8 N7 doub Y N 125 DG C8 H8 sing N N 126 DG N7 C5 sing Y N 127 DG C5 C6 sing N N 128 DG C5 C4 doub Y N 129 DG C6 O6 doub N N 130 DG C6 N1 sing N N 131 DG N1 C2 sing N N 132 DG N1 H1 sing N N 133 DG C2 N2 sing N N 134 DG C2 N3 doub N N 135 DG N2 H21 sing N N 136 DG N2 H22 sing N N 137 DG N3 C4 sing N N 138 DT OP3 P sing N N 139 DT OP3 HOP3 sing N N 140 DT P OP1 doub N N 141 DT P OP2 sing N N 142 DT P "O5'" sing N N 143 DT OP2 HOP2 sing N N 144 DT "O5'" "C5'" sing N N 145 DT "C5'" "C4'" sing N N 146 DT "C5'" "H5'" sing N N 147 DT "C5'" "H5''" sing N N 148 DT "C4'" "O4'" sing N N 149 DT "C4'" "C3'" sing N N 150 DT "C4'" "H4'" sing N N 151 DT "O4'" "C1'" sing N N 152 DT "C3'" "O3'" sing N N 153 DT "C3'" "C2'" sing N N 154 DT "C3'" "H3'" sing N N 155 DT "O3'" "HO3'" sing N N 156 DT "C2'" "C1'" sing N N 157 DT "C2'" "H2'" sing N N 158 DT "C2'" "H2''" sing N N 159 DT "C1'" N1 sing N N 160 DT "C1'" "H1'" sing N N 161 DT N1 C2 sing N N 162 DT N1 C6 sing N N 163 DT C2 O2 doub N N 164 DT C2 N3 sing N N 165 DT N3 C4 sing N N 166 DT N3 H3 sing N N 167 DT C4 O4 doub N N 168 DT C4 C5 sing N N 169 DT C5 C7 sing N N 170 DT C5 C6 doub N N 171 DT C7 H71 sing N N 172 DT C7 H72 sing N N 173 DT C7 H73 sing N N 174 DT C6 H6 sing N N 175 DU OP3 P sing N N 176 DU OP3 HOP3 sing N N 177 DU P OP1 doub N N 178 DU P OP2 sing N N 179 DU P "O5'" sing N N 180 DU OP2 HOP2 sing N N 181 DU "O5'" "C5'" sing N N 182 DU "C5'" "C4'" sing N N 183 DU "C5'" "H5'" sing N N 184 DU "C5'" "H5''" sing N N 185 DU "C4'" "O4'" sing N N 186 DU "C4'" "C3'" sing N N 187 DU "C4'" "H4'" sing N N 188 DU "O4'" "C1'" sing N N 189 DU "C3'" "O3'" sing N N 190 DU "C3'" "C2'" sing N N 191 DU "C3'" "H3'" sing N N 192 DU "O3'" "HO3'" sing N N 193 DU "C2'" "C1'" sing N N 194 DU "C2'" "H2'" sing N N 195 DU "C2'" "H2''" sing N N 196 DU "C1'" N1 sing N N 197 DU "C1'" "H1'" sing N N 198 DU N1 C2 sing N N 199 DU N1 C6 sing N N 200 DU C2 O2 doub N N 201 DU C2 N3 sing N N 202 DU N3 C4 sing N N 203 DU N3 H3 sing N N 204 DU C4 O4 doub N N 205 DU C4 C5 sing N N 206 DU C5 C6 doub N N 207 DU C5 H5 sing N N 208 DU C6 H6 sing N N 209 HOH O H1 sing N N 210 HOH O H2 sing N N 211 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2DPB 'double helix' 2DPB 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.177 -0.187 0.223 2.739 -15.604 -0.097 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.247 -0.209 0.607 6.266 -16.400 -1.046 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.054 -0.199 0.268 -3.192 -2.398 -0.886 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 0.108 -0.240 0.198 17.206 -8.145 0.722 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DU 8 1_555 -0.004 -0.080 0.140 11.945 -18.756 1.411 5 A_DA5:DU20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.050 -0.120 0.118 3.644 -20.625 4.060 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.046 -0.110 0.120 -0.475 -18.537 4.485 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DU 8 1_555 B DA 5 1_555 0.017 -0.140 0.181 -6.903 -12.719 3.695 8 A_DU8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.198 -0.140 0.088 -11.252 -7.681 -2.057 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.079 -0.089 0.311 7.623 -11.019 3.737 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.087 -0.234 0.222 3.967 -22.764 -3.988 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.192 -0.030 0.298 3.934 -7.031 -1.524 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.184 0.135 3.212 -2.931 5.151 36.709 -0.466 -0.097 3.206 8.114 4.616 37.168 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.607 0.294 3.687 2.500 -11.083 38.775 1.831 -0.564 3.507 -16.273 -3.671 40.343 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.076 0.539 2.906 1.137 7.286 26.328 -0.509 0.418 2.940 15.611 -2.437 27.324 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DU 8 1_555 -0.721 0.277 3.412 -1.279 0.391 37.951 0.373 0.938 3.436 0.600 1.967 37.974 4 AA_DG4DA5:DU20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DU 8 1_555 A DA 6 1_555 B DT 7 1_555 0.147 -0.383 3.347 -0.862 0.453 38.336 -0.641 -0.334 3.339 0.690 1.312 38.348 5 AA_DA5DA6:DT19DU20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.151 -0.534 3.294 -0.113 -2.382 32.369 -0.533 -0.290 3.323 -4.265 0.202 32.454 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DU 8 1_555 B DA 5 1_555 0.252 -0.556 3.383 0.847 -1.805 33.995 -0.652 -0.291 3.412 -3.084 -1.448 34.051 7 AA_DT7DU8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DU 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.249 -0.329 3.388 1.850 -4.372 41.671 0.014 0.548 3.391 -6.122 -2.590 41.929 8 AA_DU8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.506 0.628 2.888 -2.456 7.362 25.284 -0.396 -1.696 2.890 16.334 5.450 26.430 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.271 0.721 3.450 -3.604 -14.077 43.383 2.213 1.310 3.171 -18.437 4.720 45.641 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.147 0.134 3.245 -1.343 7.171 32.682 -0.947 0.035 3.205 12.548 2.350 33.465 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(6-AMINOHEXYL)CARBAMIC ACID' CMY 3 'POTASSIUM ION' K 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 355D _pdbx_initial_refinement_model.details 'PDB ENTRY 355D' #