data_2DPC # _entry.id 2DPC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DPC pdb_00002dpc 10.2210/pdb2dpc/pdb NDB BD0097 ? ? RCSB RCSB025684 ? ? WWPDB D_1000025684 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DP7 . unspecified PDB 2DPB . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DPC _pdbx_database_status.recvd_initial_deposition_date 2006-05-08 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Juan, E.C.M.' 1 'Kondo, J.' 2 'Kurihara, T.' 3 'Ito, T.' 4 'Ueno, Y.' 5 'Matsuda, A.' 6 'Takenaka, A.' 7 # _citation.id primary _citation.title ;Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 1969 _citation.page_last 1977 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17341465 _citation.pdbx_database_id_DOI 10.1093/nar/gkl821 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Juan, E.C.M.' 1 ? primary 'Kondo, J.' 2 ? primary 'Kurihara, T.' 3 ? primary 'Ito, T.' 4 ? primary 'Ueno, Y.' 5 ? primary 'Matsuda, A.' 6 ? primary 'Takenaka, A.' 7 ? # _cell.entry_id 2DPC _cell.length_a 25.214 _cell.length_b 40.533 _cell.length_c 63.887 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DPC _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3') ; 3679.392 2 ? ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 3 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn '(6-AMINOHEXYL)CARBAMIC ACID' 160.214 2 ? ? ? ? 5 water nat water 18.015 236 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(OMU)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATUCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 OMU n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This DNA dodecamer is a synthetic construct.' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DPC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code 'CGCGAAT(OMU)CGCG' _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_accession 2DPC _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DPC A 1 ? 12 ? 2DPC 1 ? 12 ? 1 12 2 1 2DPC B 1 ? 12 ? 2DPC 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CMY non-polymer . '(6-AMINOHEXYL)CARBAMIC ACID' ? 'C7 H16 N2 O2' 160.214 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 # _exptl.entry_id 2DPC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details ;20mM sodium cacodylate, pH 5.5, 40mM sodium chloride, 5mM magnesium chloride, 5mM cobalt hexamine and 5%(v/v) MPD, equilibrated against 35%(v/v) MPD, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 'sodium chloride' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 'cobalt hexamine' ? ? ? 1 5 1 MPD ? ? ? 1 6 1 HOH ? ? ? 1 7 2 'sodium cacodylate' ? ? ? 1 8 2 'sodium chloride' ? ? ? 1 9 2 'magnesium chloride' ? ? ? 1 10 2 MPD ? ? ? 1 11 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-01-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-18B' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-18B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 2DPC _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 19.318 _reflns.d_resolution_high 1.550 _reflns.number_obs 9980 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.63 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.275 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DPC _refine.ls_number_reflns_obs 9606 _refine.ls_number_reflns_all 9957 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2154 _refine.ls_R_factor_R_free 0.2656 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 990 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 1.987 _refine.aniso_B[2][2] -5.456 _refine.aniso_B[3][3] 3.470 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;The value of the item "Number reflections (observed)" is the number of reflections used in refinement. This value excludes the reflections that have sigma(F) less than 3.0. ; _refine.pdbx_starting_model 'PDB ENTRY 355D' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Maximum Likelihood' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 236 _refine_hist.number_atoms_total 748 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 10 # _struct.entry_id 2DPC _struct.title ;Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DPC _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;modified nucleotide, 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine, B-DNA, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 2 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A OMU 8 C5 ? ? ? 1_555 F CMY . C1Y ? ? A OMU 8 A CMY 108 1_555 ? ? ? ? ? ? ? 1.537 ? ? covale2 covale none ? B OMU 8 C5 ? ? ? 1_555 H CMY . C1Y ? ? B OMU 20 B CMY 120 1_555 ? ? ? ? ? ? ? 1.534 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B OMU 8 N3 ? ? A DA 5 B OMU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B OMU 8 O4 ? ? A DA 5 B OMU 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A OMU 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A OMU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A OMU 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A OMU 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CO 13 ? 4 'BINDING SITE FOR RESIDUE CO A 13' AC2 Software A CO 14 ? 6 'BINDING SITE FOR RESIDUE CO A 14' AC3 Software B CO 3 ? 6 'BINDING SITE FOR RESIDUE CO B 3' AC4 Software A MG 15 ? 6 'BINDING SITE FOR RESIDUE MG A 15' AC5 Software A CMY 108 ? 9 'BINDING SITE FOR RESIDUE CMY A 108' AC6 Software B CMY 120 ? 3 'BINDING SITE FOR RESIDUE CMY B 120' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH I . ? HOH A 138 . ? 1_555 ? 2 AC1 4 HOH I . ? HOH A 150 . ? 1_555 ? 3 AC1 4 HOH I . ? HOH A 157 . ? 1_555 ? 4 AC1 4 HOH I . ? HOH A 241 . ? 1_555 ? 5 AC2 6 HOH I . ? HOH A 142 . ? 1_555 ? 6 AC2 6 HOH I . ? HOH A 146 . ? 1_555 ? 7 AC2 6 HOH I . ? HOH A 192 . ? 1_555 ? 8 AC2 6 HOH I . ? HOH A 202 . ? 1_555 ? 9 AC2 6 HOH I . ? HOH A 215 . ? 1_555 ? 10 AC2 6 HOH I . ? HOH A 227 . ? 1_555 ? 11 AC3 6 HOH I . ? HOH A 109 . ? 1_555 ? 12 AC3 6 HOH I . ? HOH A 187 . ? 1_555 ? 13 AC3 6 HOH I . ? HOH A 189 . ? 1_555 ? 14 AC3 6 HOH J . ? HOH B 173 . ? 1_555 ? 15 AC3 6 HOH J . ? HOH B 181 . ? 1_555 ? 16 AC3 6 HOH J . ? HOH B 182 . ? 1_555 ? 17 AC4 6 HOH I . ? HOH A 110 . ? 1_555 ? 18 AC4 6 HOH I . ? HOH A 127 . ? 1_555 ? 19 AC4 6 HOH I . ? HOH A 137 . ? 1_555 ? 20 AC4 6 HOH I . ? HOH A 139 . ? 1_555 ? 21 AC4 6 HOH I . ? HOH A 140 . ? 1_555 ? 22 AC4 6 HOH I . ? HOH A 179 . ? 1_555 ? 23 AC5 9 DT A 7 ? DT A 7 . ? 1_555 ? 24 AC5 9 OMU A 8 ? OMU A 8 . ? 1_555 ? 25 AC5 9 HOH I . ? HOH A 191 . ? 1_555 ? 26 AC5 9 HOH I . ? HOH A 201 . ? 4_446 ? 27 AC5 9 HOH I . ? HOH A 233 . ? 1_555 ? 28 AC5 9 DC B 3 ? DC B 15 . ? 4_546 ? 29 AC5 9 DG B 4 ? DG B 16 . ? 4_546 ? 30 AC5 9 DG B 12 ? DG B 24 . ? 3_645 ? 31 AC5 9 HOH J . ? HOH B 125 . ? 4_546 ? 32 AC6 3 DT B 7 ? DT B 19 . ? 1_555 ? 33 AC6 3 OMU B 8 ? OMU B 20 . ? 1_555 ? 34 AC6 3 HOH J . ? HOH B 158 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DPC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DPC _atom_sites.fract_transf_matrix[1][1] 0.039661 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024671 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015653 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DG 2 2 2 DG GUA A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 DA 6 6 6 DA ADE A . n A 1 7 DT 7 7 7 DT THY A . n A 1 8 OMU 8 8 8 OMU THY A . n A 1 9 DC 9 9 9 DC CYT A . n A 1 10 DG 10 10 10 DG GUA A . n A 1 11 DC 11 11 11 DC CYT A . n A 1 12 DG 12 12 12 DG GUA A . n B 1 1 DC 1 13 13 DC CYT B . n B 1 2 DG 2 14 14 DG GUA B . n B 1 3 DC 3 15 15 DC CYT B . n B 1 4 DG 4 16 16 DG GUA B . n B 1 5 DA 5 17 17 DA ADE B . n B 1 6 DA 6 18 18 DA ADE B . n B 1 7 DT 7 19 19 DT THY B . n B 1 8 OMU 8 20 20 OMU THY B . n B 1 9 DC 9 21 21 DC CYT B . n B 1 10 DG 10 22 22 DG GUA B . n B 1 11 DC 11 23 23 DC CYT B . n B 1 12 DG 12 24 24 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO 1 13 1 CO CO2 A . D 2 CO 1 14 2 CO CO2 A . E 3 MG 1 15 4 MG MG2 A . F 4 CMY 1 108 8 CMY THY A . G 2 CO 1 3 3 CO CO2 B . H 4 CMY 1 120 20 CMY THY B . I 5 HOH 1 109 5 HOH HOH A . I 5 HOH 2 110 6 HOH HOH A . I 5 HOH 3 111 7 HOH HOH A . I 5 HOH 4 112 10 HOH HOH A . I 5 HOH 5 113 11 HOH HOH A . I 5 HOH 6 114 12 HOH HOH A . I 5 HOH 7 115 15 HOH HOH A . I 5 HOH 8 116 16 HOH HOH A . I 5 HOH 9 117 17 HOH HOH A . I 5 HOH 10 118 20 HOH HOH A . I 5 HOH 11 119 22 HOH HOH A . I 5 HOH 12 120 23 HOH HOH A . I 5 HOH 13 121 25 HOH HOH A . I 5 HOH 14 122 26 HOH HOH A . I 5 HOH 15 123 27 HOH HOH A . I 5 HOH 16 124 30 HOH HOH A . I 5 HOH 17 125 32 HOH HOH A . I 5 HOH 18 126 34 HOH HOH A . I 5 HOH 19 127 38 HOH HOH A . I 5 HOH 20 128 39 HOH HOH A . I 5 HOH 21 129 40 HOH HOH A . I 5 HOH 22 130 41 HOH HOH A . I 5 HOH 23 131 42 HOH HOH A . I 5 HOH 24 132 44 HOH HOH A . I 5 HOH 25 133 46 HOH HOH A . I 5 HOH 26 134 47 HOH HOH A . I 5 HOH 27 135 51 HOH HOH A . I 5 HOH 28 136 52 HOH HOH A . I 5 HOH 29 137 54 HOH HOH A . I 5 HOH 30 138 55 HOH HOH A . I 5 HOH 31 139 56 HOH HOH A . I 5 HOH 32 140 57 HOH HOH A . I 5 HOH 33 141 59 HOH HOH A . I 5 HOH 34 142 60 HOH HOH A . I 5 HOH 35 143 62 HOH HOH A . I 5 HOH 36 144 66 HOH HOH A . I 5 HOH 37 145 73 HOH HOH A . I 5 HOH 38 146 83 HOH HOH A . I 5 HOH 39 147 84 HOH HOH A . I 5 HOH 40 148 92 HOH HOH A . I 5 HOH 41 149 94 HOH HOH A . I 5 HOH 42 150 95 HOH HOH A . I 5 HOH 43 151 96 HOH HOH A . I 5 HOH 44 152 97 HOH HOH A . I 5 HOH 45 153 98 HOH HOH A . I 5 HOH 46 154 99 HOH HOH A . I 5 HOH 47 155 100 HOH HOH A . I 5 HOH 48 156 101 HOH HOH A . I 5 HOH 49 157 104 HOH HOH A . I 5 HOH 50 158 106 HOH HOH A . I 5 HOH 51 159 107 HOH HOH A . I 5 HOH 52 160 108 HOH HOH A . I 5 HOH 53 161 109 HOH HOH A . I 5 HOH 54 162 110 HOH HOH A . I 5 HOH 55 163 111 HOH HOH A . I 5 HOH 56 164 112 HOH HOH A . I 5 HOH 57 165 114 HOH HOH A . I 5 HOH 58 166 115 HOH HOH A . I 5 HOH 59 167 116 HOH HOH A . I 5 HOH 60 168 121 HOH HOH A . I 5 HOH 61 169 122 HOH HOH A . I 5 HOH 62 170 123 HOH HOH A . I 5 HOH 63 171 124 HOH HOH A . I 5 HOH 64 172 125 HOH HOH A . I 5 HOH 65 173 127 HOH HOH A . I 5 HOH 66 174 129 HOH HOH A . I 5 HOH 67 175 130 HOH HOH A . I 5 HOH 68 176 131 HOH HOH A . I 5 HOH 69 177 133 HOH HOH A . I 5 HOH 70 178 135 HOH HOH A . I 5 HOH 71 179 136 HOH HOH A . I 5 HOH 72 180 137 HOH HOH A . I 5 HOH 73 181 139 HOH HOH A . I 5 HOH 74 182 140 HOH HOH A . I 5 HOH 75 183 142 HOH HOH A . I 5 HOH 76 184 143 HOH HOH A . I 5 HOH 77 185 145 HOH HOH A . I 5 HOH 78 186 147 HOH HOH A . I 5 HOH 79 187 148 HOH HOH A . I 5 HOH 80 188 149 HOH HOH A . I 5 HOH 81 189 150 HOH HOH A . I 5 HOH 82 190 153 HOH HOH A . I 5 HOH 83 191 154 HOH HOH A . I 5 HOH 84 192 155 HOH HOH A . I 5 HOH 85 193 156 HOH HOH A . I 5 HOH 86 194 158 HOH HOH A . I 5 HOH 87 195 161 HOH HOH A . I 5 HOH 88 196 164 HOH HOH A . I 5 HOH 89 197 165 HOH HOH A . I 5 HOH 90 198 167 HOH HOH A . I 5 HOH 91 199 171 HOH HOH A . I 5 HOH 92 200 173 HOH HOH A . I 5 HOH 93 201 174 HOH HOH A . I 5 HOH 94 202 175 HOH HOH A . I 5 HOH 95 203 176 HOH HOH A . I 5 HOH 96 204 177 HOH HOH A . I 5 HOH 97 205 178 HOH HOH A . I 5 HOH 98 206 179 HOH HOH A . I 5 HOH 99 207 180 HOH HOH A . I 5 HOH 100 208 182 HOH HOH A . I 5 HOH 101 209 192 HOH HOH A . I 5 HOH 102 210 194 HOH HOH A . I 5 HOH 103 211 197 HOH HOH A . I 5 HOH 104 212 198 HOH HOH A . I 5 HOH 105 213 200 HOH HOH A . I 5 HOH 106 214 202 HOH HOH A . I 5 HOH 107 215 205 HOH HOH A . I 5 HOH 108 216 207 HOH HOH A . I 5 HOH 109 217 211 HOH HOH A . I 5 HOH 110 218 212 HOH HOH A . I 5 HOH 111 219 215 HOH HOH A . I 5 HOH 112 220 217 HOH HOH A . I 5 HOH 113 221 219 HOH HOH A . I 5 HOH 114 222 220 HOH HOH A . I 5 HOH 115 223 225 HOH HOH A . I 5 HOH 116 224 226 HOH HOH A . I 5 HOH 117 225 227 HOH HOH A . I 5 HOH 118 226 229 HOH HOH A . I 5 HOH 119 227 230 HOH HOH A . I 5 HOH 120 228 232 HOH HOH A . I 5 HOH 121 229 233 HOH HOH A . I 5 HOH 122 230 237 HOH HOH A . I 5 HOH 123 231 238 HOH HOH A . I 5 HOH 124 232 241 HOH HOH A . I 5 HOH 125 233 242 HOH HOH A . I 5 HOH 126 234 245 HOH HOH A . I 5 HOH 127 235 247 HOH HOH A . I 5 HOH 128 236 248 HOH HOH A . I 5 HOH 129 237 249 HOH HOH A . I 5 HOH 130 238 250 HOH HOH A . I 5 HOH 131 239 251 HOH HOH A . I 5 HOH 132 240 252 HOH HOH A . I 5 HOH 133 241 253 HOH HOH A . I 5 HOH 134 242 254 HOH HOH A . I 5 HOH 135 243 255 HOH HOH A . I 5 HOH 136 244 256 HOH HOH A . I 5 HOH 137 245 257 HOH HOH A . I 5 HOH 138 246 259 HOH HOH A . I 5 HOH 139 247 260 HOH HOH A . I 5 HOH 140 248 261 HOH HOH A . I 5 HOH 141 249 263 HOH HOH A . I 5 HOH 142 250 264 HOH HOH A . I 5 HOH 143 251 265 HOH HOH A . I 5 HOH 144 252 266 HOH HOH A . I 5 HOH 145 253 267 HOH HOH A . I 5 HOH 146 254 269 HOH HOH A . J 5 HOH 1 121 8 HOH HOH B . J 5 HOH 2 122 9 HOH HOH B . J 5 HOH 3 123 13 HOH HOH B . J 5 HOH 4 124 14 HOH HOH B . J 5 HOH 5 125 18 HOH HOH B . J 5 HOH 6 126 19 HOH HOH B . J 5 HOH 7 127 21 HOH HOH B . J 5 HOH 8 128 24 HOH HOH B . J 5 HOH 9 129 28 HOH HOH B . J 5 HOH 10 130 29 HOH HOH B . J 5 HOH 11 131 35 HOH HOH B . J 5 HOH 12 132 36 HOH HOH B . J 5 HOH 13 133 37 HOH HOH B . J 5 HOH 14 134 43 HOH HOH B . J 5 HOH 15 135 45 HOH HOH B . J 5 HOH 16 136 50 HOH HOH B . J 5 HOH 17 137 53 HOH HOH B . J 5 HOH 18 138 58 HOH HOH B . J 5 HOH 19 139 61 HOH HOH B . J 5 HOH 20 140 63 HOH HOH B . J 5 HOH 21 141 65 HOH HOH B . J 5 HOH 22 142 67 HOH HOH B . J 5 HOH 23 143 69 HOH HOH B . J 5 HOH 24 144 72 HOH HOH B . J 5 HOH 25 145 74 HOH HOH B . J 5 HOH 26 146 75 HOH HOH B . J 5 HOH 27 147 76 HOH HOH B . J 5 HOH 28 148 78 HOH HOH B . J 5 HOH 29 149 79 HOH HOH B . J 5 HOH 30 150 80 HOH HOH B . J 5 HOH 31 151 82 HOH HOH B . J 5 HOH 32 152 85 HOH HOH B . J 5 HOH 33 153 86 HOH HOH B . J 5 HOH 34 154 87 HOH HOH B . J 5 HOH 35 155 88 HOH HOH B . J 5 HOH 36 156 89 HOH HOH B . J 5 HOH 37 157 90 HOH HOH B . J 5 HOH 38 158 91 HOH HOH B . J 5 HOH 39 159 93 HOH HOH B . J 5 HOH 40 160 105 HOH HOH B . J 5 HOH 41 161 113 HOH HOH B . J 5 HOH 42 162 118 HOH HOH B . J 5 HOH 43 163 120 HOH HOH B . J 5 HOH 44 164 126 HOH HOH B . J 5 HOH 45 165 128 HOH HOH B . J 5 HOH 46 166 134 HOH HOH B . J 5 HOH 47 167 138 HOH HOH B . J 5 HOH 48 168 141 HOH HOH B . J 5 HOH 49 169 144 HOH HOH B . J 5 HOH 50 170 146 HOH HOH B . J 5 HOH 51 171 151 HOH HOH B . J 5 HOH 52 172 152 HOH HOH B . J 5 HOH 53 173 157 HOH HOH B . J 5 HOH 54 174 159 HOH HOH B . J 5 HOH 55 175 160 HOH HOH B . J 5 HOH 56 176 162 HOH HOH B . J 5 HOH 57 177 163 HOH HOH B . J 5 HOH 58 178 168 HOH HOH B . J 5 HOH 59 179 169 HOH HOH B . J 5 HOH 60 180 170 HOH HOH B . J 5 HOH 61 181 172 HOH HOH B . J 5 HOH 62 182 181 HOH HOH B . J 5 HOH 63 183 183 HOH HOH B . J 5 HOH 64 184 184 HOH HOH B . J 5 HOH 65 185 185 HOH HOH B . J 5 HOH 66 186 186 HOH HOH B . J 5 HOH 67 187 187 HOH HOH B . J 5 HOH 68 188 188 HOH HOH B . J 5 HOH 69 189 189 HOH HOH B . J 5 HOH 70 190 191 HOH HOH B . J 5 HOH 71 191 195 HOH HOH B . J 5 HOH 72 192 199 HOH HOH B . J 5 HOH 73 193 203 HOH HOH B . J 5 HOH 74 194 204 HOH HOH B . J 5 HOH 75 195 208 HOH HOH B . J 5 HOH 76 196 209 HOH HOH B . J 5 HOH 77 197 213 HOH HOH B . J 5 HOH 78 198 214 HOH HOH B . J 5 HOH 79 199 221 HOH HOH B . J 5 HOH 80 200 228 HOH HOH B . J 5 HOH 81 201 236 HOH HOH B . J 5 HOH 82 202 239 HOH HOH B . J 5 HOH 83 203 240 HOH HOH B . J 5 HOH 84 204 243 HOH HOH B . J 5 HOH 85 205 244 HOH HOH B . J 5 HOH 86 206 246 HOH HOH B . J 5 HOH 87 207 258 HOH HOH B . J 5 HOH 88 208 262 HOH HOH B . J 5 HOH 89 209 268 HOH HOH B . J 5 HOH 90 210 270 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A OMU 8 A OMU 8 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; 2 B OMU 8 B OMU 20 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-17 2 'Structure model' 1 1 2007-12-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq.db_align_beg' 5 4 'Structure model' '_struct_ref_seq.db_align_end' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement 1.1 ? 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 0 B CMY 120 ? C6Y ? H CMY ? C6Y 2 1 N 0 B CMY 120 ? C7Y ? H CMY ? C7Y 3 1 N 0 B CMY 120 ? N2Y ? H CMY ? N2Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CMY O1Y O N N 1 CMY C1Y C N N 2 CMY N1Y N N N 3 CMY C2Y C N N 4 CMY C3Y C N N 5 CMY C4Y C N N 6 CMY C5Y C N N 7 CMY C6Y C N N 8 CMY C7Y C N N 9 CMY N2Y N N N 10 CMY O1 O N N 11 CMY H1Y H N N 12 CMY H1 H N N 13 CMY H2Y1 H N N 14 CMY H2Y2 H N N 15 CMY H3Y1 H N N 16 CMY H3Y2 H N N 17 CMY H4Y1 H N N 18 CMY H4Y2 H N N 19 CMY H5Y1 H N N 20 CMY H5Y2 H N N 21 CMY H6Y1 H N N 22 CMY H6Y2 H N N 23 CMY H7Y1 H N N 24 CMY H7Y2 H N N 25 CMY H11 H N N 26 CMY H12 H N N 27 CO CO CO N N 28 DA OP3 O N N 29 DA P P N N 30 DA OP1 O N N 31 DA OP2 O N N 32 DA "O5'" O N N 33 DA "C5'" C N N 34 DA "C4'" C N R 35 DA "O4'" O N N 36 DA "C3'" C N S 37 DA "O3'" O N N 38 DA "C2'" C N N 39 DA "C1'" C N R 40 DA N9 N Y N 41 DA C8 C Y N 42 DA N7 N Y N 43 DA C5 C Y N 44 DA C6 C Y N 45 DA N6 N N N 46 DA N1 N Y N 47 DA C2 C Y N 48 DA N3 N Y N 49 DA C4 C Y N 50 DA HOP3 H N N 51 DA HOP2 H N N 52 DA "H5'" H N N 53 DA "H5''" H N N 54 DA "H4'" H N N 55 DA "H3'" H N N 56 DA "HO3'" H N N 57 DA "H2'" H N N 58 DA "H2''" H N N 59 DA "H1'" H N N 60 DA H8 H N N 61 DA H61 H N N 62 DA H62 H N N 63 DA H2 H N N 64 DC OP3 O N N 65 DC P P N N 66 DC OP1 O N N 67 DC OP2 O N N 68 DC "O5'" O N N 69 DC "C5'" C N N 70 DC "C4'" C N R 71 DC "O4'" O N N 72 DC "C3'" C N S 73 DC "O3'" O N N 74 DC "C2'" C N N 75 DC "C1'" C N R 76 DC N1 N N N 77 DC C2 C N N 78 DC O2 O N N 79 DC N3 N N N 80 DC C4 C N N 81 DC N4 N N N 82 DC C5 C N N 83 DC C6 C N N 84 DC HOP3 H N N 85 DC HOP2 H N N 86 DC "H5'" H N N 87 DC "H5''" H N N 88 DC "H4'" H N N 89 DC "H3'" H N N 90 DC "HO3'" H N N 91 DC "H2'" H N N 92 DC "H2''" H N N 93 DC "H1'" H N N 94 DC H41 H N N 95 DC H42 H N N 96 DC H5 H N N 97 DC H6 H N N 98 DG OP3 O N N 99 DG P P N N 100 DG OP1 O N N 101 DG OP2 O N N 102 DG "O5'" O N N 103 DG "C5'" C N N 104 DG "C4'" C N R 105 DG "O4'" O N N 106 DG "C3'" C N S 107 DG "O3'" O N N 108 DG "C2'" C N N 109 DG "C1'" C N R 110 DG N9 N Y N 111 DG C8 C Y N 112 DG N7 N Y N 113 DG C5 C Y N 114 DG C6 C N N 115 DG O6 O N N 116 DG N1 N N N 117 DG C2 C N N 118 DG N2 N N N 119 DG N3 N N N 120 DG C4 C Y N 121 DG HOP3 H N N 122 DG HOP2 H N N 123 DG "H5'" H N N 124 DG "H5''" H N N 125 DG "H4'" H N N 126 DG "H3'" H N N 127 DG "HO3'" H N N 128 DG "H2'" H N N 129 DG "H2''" H N N 130 DG "H1'" H N N 131 DG H8 H N N 132 DG H1 H N N 133 DG H21 H N N 134 DG H22 H N N 135 DT OP3 O N N 136 DT P P N N 137 DT OP1 O N N 138 DT OP2 O N N 139 DT "O5'" O N N 140 DT "C5'" C N N 141 DT "C4'" C N R 142 DT "O4'" O N N 143 DT "C3'" C N S 144 DT "O3'" O N N 145 DT "C2'" C N N 146 DT "C1'" C N R 147 DT N1 N N N 148 DT C2 C N N 149 DT O2 O N N 150 DT N3 N N N 151 DT C4 C N N 152 DT O4 O N N 153 DT C5 C N N 154 DT C7 C N N 155 DT C6 C N N 156 DT HOP3 H N N 157 DT HOP2 H N N 158 DT "H5'" H N N 159 DT "H5''" H N N 160 DT "H4'" H N N 161 DT "H3'" H N N 162 DT "HO3'" H N N 163 DT "H2'" H N N 164 DT "H2''" H N N 165 DT "H1'" H N N 166 DT H3 H N N 167 DT H71 H N N 168 DT H72 H N N 169 DT H73 H N N 170 DT H6 H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 MG MG MG N N 175 OMU N1 N N N 176 OMU C2 C N N 177 OMU N3 N N N 178 OMU C4 C N N 179 OMU C5 C N N 180 OMU C6 C N N 181 OMU O2 O N N 182 OMU O4 O N N 183 OMU "C1'" C N R 184 OMU "C2'" C N R 185 OMU "O2'" O N N 186 OMU CM2 C N N 187 OMU "C3'" C N R 188 OMU "C4'" C N R 189 OMU "O3'" O N N 190 OMU "O4'" O N N 191 OMU "C5'" C N N 192 OMU "O5'" O N N 193 OMU P P N N 194 OMU OP1 O N N 195 OMU OP2 O N N 196 OMU OP3 O N N 197 OMU HN3 H N N 198 OMU H5 H N N 199 OMU H6 H N N 200 OMU "H1'" H N N 201 OMU "H2'" H N N 202 OMU HM21 H N N 203 OMU HM22 H N N 204 OMU HM23 H N N 205 OMU "H3'" H N N 206 OMU "H4'" H N N 207 OMU "HO3'" H N N 208 OMU "H5'" H N N 209 OMU "H5''" H N N 210 OMU HOP2 H N N 211 OMU HOP3 H N N 212 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CMY O1Y C1Y sing N N 1 CMY O1Y H1Y sing N N 2 CMY C1Y N1Y sing N N 3 CMY C1Y O1 doub N N 4 CMY N1Y C2Y sing N N 5 CMY N1Y H1 sing N N 6 CMY C2Y C3Y sing N N 7 CMY C2Y H2Y1 sing N N 8 CMY C2Y H2Y2 sing N N 9 CMY C3Y C4Y sing N N 10 CMY C3Y H3Y1 sing N N 11 CMY C3Y H3Y2 sing N N 12 CMY C4Y C5Y sing N N 13 CMY C4Y H4Y1 sing N N 14 CMY C4Y H4Y2 sing N N 15 CMY C5Y C6Y sing N N 16 CMY C5Y H5Y1 sing N N 17 CMY C5Y H5Y2 sing N N 18 CMY C6Y C7Y sing N N 19 CMY C6Y H6Y1 sing N N 20 CMY C6Y H6Y2 sing N N 21 CMY C7Y N2Y sing N N 22 CMY C7Y H7Y1 sing N N 23 CMY C7Y H7Y2 sing N N 24 CMY N2Y H11 sing N N 25 CMY N2Y H12 sing N N 26 DA OP3 P sing N N 27 DA OP3 HOP3 sing N N 28 DA P OP1 doub N N 29 DA P OP2 sing N N 30 DA P "O5'" sing N N 31 DA OP2 HOP2 sing N N 32 DA "O5'" "C5'" sing N N 33 DA "C5'" "C4'" sing N N 34 DA "C5'" "H5'" sing N N 35 DA "C5'" "H5''" sing N N 36 DA "C4'" "O4'" sing N N 37 DA "C4'" "C3'" sing N N 38 DA "C4'" "H4'" sing N N 39 DA "O4'" "C1'" sing N N 40 DA "C3'" "O3'" sing N N 41 DA "C3'" "C2'" sing N N 42 DA "C3'" "H3'" sing N N 43 DA "O3'" "HO3'" sing N N 44 DA "C2'" "C1'" sing N N 45 DA "C2'" "H2'" sing N N 46 DA "C2'" "H2''" sing N N 47 DA "C1'" N9 sing N N 48 DA "C1'" "H1'" sing N N 49 DA N9 C8 sing Y N 50 DA N9 C4 sing Y N 51 DA C8 N7 doub Y N 52 DA C8 H8 sing N N 53 DA N7 C5 sing Y N 54 DA C5 C6 sing Y N 55 DA C5 C4 doub Y N 56 DA C6 N6 sing N N 57 DA C6 N1 doub Y N 58 DA N6 H61 sing N N 59 DA N6 H62 sing N N 60 DA N1 C2 sing Y N 61 DA C2 N3 doub Y N 62 DA C2 H2 sing N N 63 DA N3 C4 sing Y N 64 DC OP3 P sing N N 65 DC OP3 HOP3 sing N N 66 DC P OP1 doub N N 67 DC P OP2 sing N N 68 DC P "O5'" sing N N 69 DC OP2 HOP2 sing N N 70 DC "O5'" "C5'" sing N N 71 DC "C5'" "C4'" sing N N 72 DC "C5'" "H5'" sing N N 73 DC "C5'" "H5''" sing N N 74 DC "C4'" "O4'" sing N N 75 DC "C4'" "C3'" sing N N 76 DC "C4'" "H4'" sing N N 77 DC "O4'" "C1'" sing N N 78 DC "C3'" "O3'" sing N N 79 DC "C3'" "C2'" sing N N 80 DC "C3'" "H3'" sing N N 81 DC "O3'" "HO3'" sing N N 82 DC "C2'" "C1'" sing N N 83 DC "C2'" "H2'" sing N N 84 DC "C2'" "H2''" sing N N 85 DC "C1'" N1 sing N N 86 DC "C1'" "H1'" sing N N 87 DC N1 C2 sing N N 88 DC N1 C6 sing N N 89 DC C2 O2 doub N N 90 DC C2 N3 sing N N 91 DC N3 C4 doub N N 92 DC C4 N4 sing N N 93 DC C4 C5 sing N N 94 DC N4 H41 sing N N 95 DC N4 H42 sing N N 96 DC C5 C6 doub N N 97 DC C5 H5 sing N N 98 DC C6 H6 sing N N 99 DG OP3 P sing N N 100 DG OP3 HOP3 sing N N 101 DG P OP1 doub N N 102 DG P OP2 sing N N 103 DG P "O5'" sing N N 104 DG OP2 HOP2 sing N N 105 DG "O5'" "C5'" sing N N 106 DG "C5'" "C4'" sing N N 107 DG "C5'" "H5'" sing N N 108 DG "C5'" "H5''" sing N N 109 DG "C4'" "O4'" sing N N 110 DG "C4'" "C3'" sing N N 111 DG "C4'" "H4'" sing N N 112 DG "O4'" "C1'" sing N N 113 DG "C3'" "O3'" sing N N 114 DG "C3'" "C2'" sing N N 115 DG "C3'" "H3'" sing N N 116 DG "O3'" "HO3'" sing N N 117 DG "C2'" "C1'" sing N N 118 DG "C2'" "H2'" sing N N 119 DG "C2'" "H2''" sing N N 120 DG "C1'" N9 sing N N 121 DG "C1'" "H1'" sing N N 122 DG N9 C8 sing Y N 123 DG N9 C4 sing Y N 124 DG C8 N7 doub Y N 125 DG C8 H8 sing N N 126 DG N7 C5 sing Y N 127 DG C5 C6 sing N N 128 DG C5 C4 doub Y N 129 DG C6 O6 doub N N 130 DG C6 N1 sing N N 131 DG N1 C2 sing N N 132 DG N1 H1 sing N N 133 DG C2 N2 sing N N 134 DG C2 N3 doub N N 135 DG N2 H21 sing N N 136 DG N2 H22 sing N N 137 DG N3 C4 sing N N 138 DT OP3 P sing N N 139 DT OP3 HOP3 sing N N 140 DT P OP1 doub N N 141 DT P OP2 sing N N 142 DT P "O5'" sing N N 143 DT OP2 HOP2 sing N N 144 DT "O5'" "C5'" sing N N 145 DT "C5'" "C4'" sing N N 146 DT "C5'" "H5'" sing N N 147 DT "C5'" "H5''" sing N N 148 DT "C4'" "O4'" sing N N 149 DT "C4'" "C3'" sing N N 150 DT "C4'" "H4'" sing N N 151 DT "O4'" "C1'" sing N N 152 DT "C3'" "O3'" sing N N 153 DT "C3'" "C2'" sing N N 154 DT "C3'" "H3'" sing N N 155 DT "O3'" "HO3'" sing N N 156 DT "C2'" "C1'" sing N N 157 DT "C2'" "H2'" sing N N 158 DT "C2'" "H2''" sing N N 159 DT "C1'" N1 sing N N 160 DT "C1'" "H1'" sing N N 161 DT N1 C2 sing N N 162 DT N1 C6 sing N N 163 DT C2 O2 doub N N 164 DT C2 N3 sing N N 165 DT N3 C4 sing N N 166 DT N3 H3 sing N N 167 DT C4 O4 doub N N 168 DT C4 C5 sing N N 169 DT C5 C7 sing N N 170 DT C5 C6 doub N N 171 DT C7 H71 sing N N 172 DT C7 H72 sing N N 173 DT C7 H73 sing N N 174 DT C6 H6 sing N N 175 HOH O H1 sing N N 176 HOH O H2 sing N N 177 OMU N1 C2 sing N N 178 OMU N1 C6 sing N N 179 OMU N1 "C1'" sing N N 180 OMU C2 N3 sing N N 181 OMU C2 O2 doub N N 182 OMU N3 C4 sing N N 183 OMU N3 HN3 sing N N 184 OMU C4 C5 sing N N 185 OMU C4 O4 doub N N 186 OMU C5 C6 doub N N 187 OMU C5 H5 sing N N 188 OMU C6 H6 sing N N 189 OMU "C1'" "C2'" sing N N 190 OMU "C1'" "O4'" sing N N 191 OMU "C1'" "H1'" sing N N 192 OMU "C2'" "O2'" sing N N 193 OMU "C2'" "C3'" sing N N 194 OMU "C2'" "H2'" sing N N 195 OMU "O2'" CM2 sing N N 196 OMU CM2 HM21 sing N N 197 OMU CM2 HM22 sing N N 198 OMU CM2 HM23 sing N N 199 OMU "C3'" "C4'" sing N N 200 OMU "C3'" "O3'" sing N N 201 OMU "C3'" "H3'" sing N N 202 OMU "C4'" "O4'" sing N N 203 OMU "C4'" "C5'" sing N N 204 OMU "C4'" "H4'" sing N N 205 OMU "O3'" "HO3'" sing N N 206 OMU "C5'" "O5'" sing N N 207 OMU "C5'" "H5'" sing N N 208 OMU "C5'" "H5''" sing N N 209 OMU "O5'" P sing N N 210 OMU P OP1 doub N N 211 OMU P OP2 sing N N 212 OMU P OP3 sing N N 213 OMU OP2 HOP2 sing N N 214 OMU OP3 HOP3 sing N N 215 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2DPC 'double helix' 2DPC 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.214 -0.127 -0.024 4.326 -12.090 -2.370 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.168 -0.187 0.463 7.672 -15.061 -2.229 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.044 -0.194 0.242 -7.771 -5.660 -1.066 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.108 -0.079 -0.007 9.937 -4.908 -3.299 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B OMU 8 1_555 0.199 -0.083 0.181 8.195 -18.187 -3.606 5 A_DA5:OMU20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.018 -0.072 0.215 2.208 -13.300 4.760 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.005 -0.137 0.208 0.720 -15.947 6.010 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A OMU 8 1_555 B DA 5 1_555 -0.137 -0.097 0.310 -12.695 -21.544 3.553 8 A_OMU8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.182 -0.110 0.257 -17.360 -5.432 -2.666 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.113 -0.112 0.337 5.524 -6.185 2.260 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.144 -0.172 0.330 0.590 -18.226 -3.787 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.120 -0.109 0.366 10.730 -2.895 -3.342 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.109 -0.327 3.209 -3.724 6.817 32.777 -1.644 -0.778 3.051 11.873 6.486 33.660 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.506 0.029 3.715 2.703 -7.957 41.301 0.978 -0.386 3.673 -11.141 -3.785 42.111 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.298 0.124 2.973 1.415 9.111 28.428 -1.491 0.847 2.857 17.965 -2.790 29.856 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B OMU 8 1_555 -0.328 -0.285 3.314 -4.854 3.997 39.479 -0.884 -0.086 3.287 5.872 7.130 39.956 4 AA_DG4DA5:OMU20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B OMU 8 1_555 A DA 6 1_555 B DT 7 1_555 0.127 -0.417 3.344 -0.797 -3.115 34.036 -0.204 -0.346 3.364 -5.307 1.357 34.183 5 AA_DA5DA6:DT19OMU20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.058 -0.556 3.268 -0.395 2.051 30.931 -1.432 -0.184 3.225 3.841 0.739 31.000 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A OMU 8 1_555 B DA 5 1_555 -0.027 -0.357 3.500 0.690 -4.283 35.137 0.092 0.154 3.516 -7.061 -1.138 35.395 7 AA_DT7OMU8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A OMU 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.204 -0.442 3.404 1.982 -1.296 41.925 -0.477 0.499 3.403 -1.810 -2.767 41.989 8 AA_OMU8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.431 0.583 2.886 -1.028 5.229 27.384 0.091 -1.115 2.926 10.915 2.145 27.888 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.072 0.977 3.639 -2.101 -17.227 45.599 2.609 1.129 3.141 -21.338 2.602 48.625 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.123 0.351 3.187 -1.750 1.197 33.549 0.416 -0.067 3.199 2.071 3.027 33.614 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 'MAGNESIUM ION' MG 4 '(6-AMINOHEXYL)CARBAMIC ACID' CMY 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 355D _pdbx_initial_refinement_model.details 'PDB ENTRY 355D' #