HEADER LIGASE 18-MAY-06 2DQ0 TITLE CRYSTAL STRUCTURE OF SERYL-TRNA SYNTHETASE FROM PYROCOCCUS HORIKOSHII TITLE 2 COMPLEXED WITH A SERYL-ADENYLATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERINE--TRNA LIGASE, SERRS; COMPND 5 EC: 6.1.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS COILED-COIL, HOMODIMER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ITOH,S.SEKINE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 5 25-OCT-23 2DQ0 1 REMARK REVDAT 4 06-NOV-19 2DQ0 1 JRNL REVDAT 3 03-FEB-09 2DQ0 1 JRNL VERSN REVDAT 2 09-SEP-08 2DQ0 1 JRNL REMARK TITLE VERSN REVDAT 1 05-JUN-07 2DQ0 0 JRNL AUTH Y.ITOH,S.SEKINE,C.KUROISHI,T.TERADA,M.SHIROUZU,S.KURAMITSU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL CRYSTALLOGRAPHIC AND MUTATIONAL STUDIES OF SERYL-TRNA JRNL TITL 2 SYNTHETASE FROM THE ARCHAEON PYROCOCCUS HORIKOSHII. JRNL REF RNA BIOL. V. 5 169 2008 JRNL REFN ESSN 1555-8584 JRNL PMID 18818520 JRNL DOI 10.4161/RNA.5.3.6876 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 56613.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 43448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2180 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6261 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 322 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.22000 REMARK 3 B22 (A**2) : -11.60000 REMARK 3 B33 (A**2) : 3.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.100 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.180 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.730 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 51.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SSA_PRODRG_ADD.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SSA_PRODRG.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45769 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 33.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60200 REMARK 200 R SYM FOR SHELL (I) : 0.60200 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1SET REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M MAGNESIUM REMARK 280 ACETATE, 0.1M HEPES-NAOH, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.01900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.25400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.01850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.25400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.01900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.01850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 448 REMARK 465 LYS A 449 REMARK 465 GLU A 450 REMARK 465 ARG A 451 REMARK 465 CYS A 452 REMARK 465 CYS A 453 REMARK 465 ALA A 454 REMARK 465 THR A 455 REMARK 465 LYS B 448 REMARK 465 LYS B 449 REMARK 465 GLU B 450 REMARK 465 ARG B 451 REMARK 465 CYS B 452 REMARK 465 CYS B 453 REMARK 465 ALA B 454 REMARK 465 THR B 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 57.47 -172.10 REMARK 500 GLU A 23 54.25 -104.45 REMARK 500 LYS A 28 -6.74 -58.19 REMARK 500 LYS A 67 -149.67 -108.80 REMARK 500 GLU A 69 60.32 63.06 REMARK 500 VAL A 71 -53.11 -18.25 REMARK 500 ASP A 72 -50.39 -8.29 REMARK 500 ASP A 119 -163.50 -160.11 REMARK 500 GLU A 156 -75.53 -65.31 REMARK 500 ASN A 190 -128.92 39.34 REMARK 500 THR A 252 147.49 -178.59 REMARK 500 ALA A 289 -21.24 -172.64 REMARK 500 ASP A 292 -65.82 -165.43 REMARK 500 THR A 378 -135.72 54.26 REMARK 500 ASP A 394 -78.06 -41.08 REMARK 500 GLU A 395 -178.29 177.93 REMARK 500 LYS A 396 68.74 67.49 REMARK 500 ALA A 407 -64.15 -100.69 REMARK 500 LYS B 67 -154.23 -119.72 REMARK 500 PRO B 70 38.55 -76.88 REMARK 500 VAL B 71 0.06 -52.70 REMARK 500 PRO B 112 -33.48 -39.56 REMARK 500 ARG B 127 145.45 -173.65 REMARK 500 ASN B 190 -131.91 44.14 REMARK 500 THR B 252 146.05 -177.11 REMARK 500 SER B 279 157.94 177.76 REMARK 500 ALA B 289 -28.92 167.38 REMARK 500 ASP B 292 -77.54 -159.90 REMARK 500 THR B 378 -130.31 55.17 REMARK 500 THR B 393 -8.11 -55.99 REMARK 500 ALA B 407 -67.29 -99.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SSA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SSA B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZR2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ATP REMARK 900 RELATED ID: 2ZR3 RELATED DB: PDB REMARK 900 APO FORM OF THE SAME PROTEIN REMARK 900 RELATED ID: PHO001000710.1 RELATED DB: TARGETDB DBREF 2DQ0 A 1 455 UNP O58441 SYS_PYRHO 1 455 DBREF 2DQ0 B 1 455 UNP O58441 SYS_PYRHO 1 455 SEQRES 1 A 455 MET LEU ASP ILE LYS LEU ILE ARG GLU ASN PRO GLU LEU SEQRES 2 A 455 VAL LYS ASN ASP LEU ILE LYS ARG GLY GLU LEU GLU LYS SEQRES 3 A 455 VAL LYS TRP VAL ASP GLU ILE LEU LYS LEU ASP THR GLU SEQRES 4 A 455 TRP ARG THR LYS LEU LYS GLU ILE ASN ARG LEU ARG HIS SEQRES 5 A 455 GLU ARG ASN LYS ILE ALA VAL GLU ILE GLY LYS ARG ARG SEQRES 6 A 455 LYS LYS GLY GLU PRO VAL ASP GLU LEU LEU ALA LYS SER SEQRES 7 A 455 ARG GLU ILE VAL LYS ARG ILE GLY GLU LEU GLU ASN GLU SEQRES 8 A 455 VAL GLU GLU LEU LYS LYS LYS ILE ASP TYR TYR LEU TRP SEQRES 9 A 455 ARG LEU PRO ASN ILE THR HIS PRO SER VAL PRO VAL GLY SEQRES 10 A 455 LYS ASP GLU ASN ASP ASN VAL PRO ILE ARG PHE TRP GLY SEQRES 11 A 455 LYS ALA ARG VAL TRP LYS GLY HIS LEU GLU ARG PHE LEU SEQRES 12 A 455 GLU GLN SER GLN GLY LYS MET GLU TYR GLU ILE LEU GLU SEQRES 13 A 455 TRP LYS PRO LYS LEU HIS VAL ASP LEU LEU GLU ILE LEU SEQRES 14 A 455 GLY GLY ALA ASP PHE ALA ARG ALA ALA LYS VAL SER GLY SEQRES 15 A 455 SER ARG PHE TYR TYR LEU LEU ASN GLU ILE VAL ILE LEU SEQRES 16 A 455 ASP LEU ALA LEU ILE ARG PHE ALA LEU ASP ARG LEU ILE SEQRES 17 A 455 GLU LYS GLY PHE THR PRO VAL ILE PRO PRO TYR MET VAL SEQRES 18 A 455 ARG ARG PHE VAL GLU GLU GLY SER THR SER PHE GLU ASP SEQRES 19 A 455 PHE GLU ASP VAL ILE TYR LYS VAL GLU ASP GLU ASP LEU SEQRES 20 A 455 TYR LEU ILE PRO THR ALA GLU HIS PRO LEU ALA GLY MET SEQRES 21 A 455 HIS ALA ASN GLU ILE LEU ASP GLY LYS ASP LEU PRO LEU SEQRES 22 A 455 LEU TYR VAL GLY VAL SER PRO CYS PHE ARG LYS GLU ALA SEQRES 23 A 455 GLY THR ALA GLY LYS ASP THR LYS GLY ILE PHE ARG VAL SEQRES 24 A 455 HIS GLN PHE HIS LYS VAL GLU GLN PHE VAL TYR SER ARG SEQRES 25 A 455 PRO GLU GLU SER TRP GLU TRP HIS GLU LYS ILE ILE ARG SEQRES 26 A 455 ASN ALA GLU GLU LEU PHE GLN GLU LEU GLU ILE PRO TYR SEQRES 27 A 455 ARG VAL VAL ASN ILE CYS THR GLY ASP LEU GLY TYR VAL SEQRES 28 A 455 ALA ALA LYS LYS TYR ASP ILE GLU ALA TRP MET PRO GLY SEQRES 29 A 455 GLN GLY LYS PHE ARG GLU VAL VAL SER ALA SER ASN CYS SEQRES 30 A 455 THR ASP TRP GLN ALA ARG ARG LEU ASN ILE ARG PHE ARG SEQRES 31 A 455 ASP ARG THR ASP GLU LYS PRO ARG TYR VAL HIS THR LEU SEQRES 32 A 455 ASN SER THR ALA ILE ALA THR SER ARG ALA ILE VAL ALA SEQRES 33 A 455 ILE LEU GLU ASN HIS GLN GLU GLU ASP GLY THR VAL ARG SEQRES 34 A 455 ILE PRO LYS VAL LEU TRP LYS TYR THR GLY PHE LYS GLU SEQRES 35 A 455 ILE VAL PRO VAL GLU LYS LYS GLU ARG CYS CYS ALA THR SEQRES 1 B 455 MET LEU ASP ILE LYS LEU ILE ARG GLU ASN PRO GLU LEU SEQRES 2 B 455 VAL LYS ASN ASP LEU ILE LYS ARG GLY GLU LEU GLU LYS SEQRES 3 B 455 VAL LYS TRP VAL ASP GLU ILE LEU LYS LEU ASP THR GLU SEQRES 4 B 455 TRP ARG THR LYS LEU LYS GLU ILE ASN ARG LEU ARG HIS SEQRES 5 B 455 GLU ARG ASN LYS ILE ALA VAL GLU ILE GLY LYS ARG ARG SEQRES 6 B 455 LYS LYS GLY GLU PRO VAL ASP GLU LEU LEU ALA LYS SER SEQRES 7 B 455 ARG GLU ILE VAL LYS ARG ILE GLY GLU LEU GLU ASN GLU SEQRES 8 B 455 VAL GLU GLU LEU LYS LYS LYS ILE ASP TYR TYR LEU TRP SEQRES 9 B 455 ARG LEU PRO ASN ILE THR HIS PRO SER VAL PRO VAL GLY SEQRES 10 B 455 LYS ASP GLU ASN ASP ASN VAL PRO ILE ARG PHE TRP GLY SEQRES 11 B 455 LYS ALA ARG VAL TRP LYS GLY HIS LEU GLU ARG PHE LEU SEQRES 12 B 455 GLU GLN SER GLN GLY LYS MET GLU TYR GLU ILE LEU GLU SEQRES 13 B 455 TRP LYS PRO LYS LEU HIS VAL ASP LEU LEU GLU ILE LEU SEQRES 14 B 455 GLY GLY ALA ASP PHE ALA ARG ALA ALA LYS VAL SER GLY SEQRES 15 B 455 SER ARG PHE TYR TYR LEU LEU ASN GLU ILE VAL ILE LEU SEQRES 16 B 455 ASP LEU ALA LEU ILE ARG PHE ALA LEU ASP ARG LEU ILE SEQRES 17 B 455 GLU LYS GLY PHE THR PRO VAL ILE PRO PRO TYR MET VAL SEQRES 18 B 455 ARG ARG PHE VAL GLU GLU GLY SER THR SER PHE GLU ASP SEQRES 19 B 455 PHE GLU ASP VAL ILE TYR LYS VAL GLU ASP GLU ASP LEU SEQRES 20 B 455 TYR LEU ILE PRO THR ALA GLU HIS PRO LEU ALA GLY MET SEQRES 21 B 455 HIS ALA ASN GLU ILE LEU ASP GLY LYS ASP LEU PRO LEU SEQRES 22 B 455 LEU TYR VAL GLY VAL SER PRO CYS PHE ARG LYS GLU ALA SEQRES 23 B 455 GLY THR ALA GLY LYS ASP THR LYS GLY ILE PHE ARG VAL SEQRES 24 B 455 HIS GLN PHE HIS LYS VAL GLU GLN PHE VAL TYR SER ARG SEQRES 25 B 455 PRO GLU GLU SER TRP GLU TRP HIS GLU LYS ILE ILE ARG SEQRES 26 B 455 ASN ALA GLU GLU LEU PHE GLN GLU LEU GLU ILE PRO TYR SEQRES 27 B 455 ARG VAL VAL ASN ILE CYS THR GLY ASP LEU GLY TYR VAL SEQRES 28 B 455 ALA ALA LYS LYS TYR ASP ILE GLU ALA TRP MET PRO GLY SEQRES 29 B 455 GLN GLY LYS PHE ARG GLU VAL VAL SER ALA SER ASN CYS SEQRES 30 B 455 THR ASP TRP GLN ALA ARG ARG LEU ASN ILE ARG PHE ARG SEQRES 31 B 455 ASP ARG THR ASP GLU LYS PRO ARG TYR VAL HIS THR LEU SEQRES 32 B 455 ASN SER THR ALA ILE ALA THR SER ARG ALA ILE VAL ALA SEQRES 33 B 455 ILE LEU GLU ASN HIS GLN GLU GLU ASP GLY THR VAL ARG SEQRES 34 B 455 ILE PRO LYS VAL LEU TRP LYS TYR THR GLY PHE LYS GLU SEQRES 35 B 455 ILE VAL PRO VAL GLU LYS LYS GLU ARG CYS CYS ALA THR HET SO4 A2001 5 HET SO4 A2003 5 HET SO4 A2005 5 HET SO4 A2007 5 HET SSA A1001 29 HET SO4 B2002 5 HET SO4 B2004 5 HET SO4 B2006 5 HET SSA B1002 29 HETNAM SO4 SULFATE ION HETNAM SSA 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE FORMUL 3 SO4 7(O4 S 2-) FORMUL 7 SSA 2(C13 H19 N7 O8 S) FORMUL 12 HOH *159(H2 O) HELIX 1 1 ASP A 3 ASN A 10 1 8 HELIX 2 2 ASN A 10 GLY A 22 1 13 HELIX 3 3 GLU A 23 VAL A 27 5 5 HELIX 4 4 LYS A 28 LYS A 66 1 39 HELIX 5 5 VAL A 71 TRP A 104 1 34 HELIX 6 6 ASP A 119 ASN A 123 5 5 HELIX 7 7 HIS A 138 GLN A 147 1 10 HELIX 8 8 LEU A 161 LEU A 169 1 9 HELIX 9 9 PHE A 174 SER A 181 1 8 HELIX 10 10 ASN A 190 LYS A 210 1 21 HELIX 11 11 ARG A 222 GLY A 228 1 7 HELIX 12 12 GLU A 233 VAL A 238 1 6 HELIX 13 13 ALA A 253 MET A 260 1 8 HELIX 14 14 GLU A 315 LEU A 334 1 20 HELIX 15 15 CYS A 344 LEU A 348 5 5 HELIX 16 16 GLN A 381 ASN A 386 1 6 HELIX 17 17 THR A 410 HIS A 421 1 12 HELIX 18 18 PRO A 431 VAL A 433 5 3 HELIX 19 19 LEU A 434 GLY A 439 1 6 HELIX 20 20 ASP B 3 ASN B 10 1 8 HELIX 21 21 ASN B 10 ARG B 21 1 12 HELIX 22 22 GLU B 23 LYS B 63 1 41 HELIX 23 23 VAL B 71 TRP B 104 1 34 HELIX 24 24 ASP B 119 ASN B 123 5 5 HELIX 25 25 HIS B 138 GLN B 147 1 10 HELIX 26 26 LEU B 161 GLY B 170 1 10 HELIX 27 27 PHE B 174 SER B 181 1 8 HELIX 28 28 ASN B 190 LYS B 210 1 21 HELIX 29 29 ARG B 222 THR B 230 1 9 HELIX 30 30 GLU B 233 VAL B 238 1 6 HELIX 31 31 ALA B 253 MET B 260 1 8 HELIX 32 32 LYS B 269 LEU B 271 5 3 HELIX 33 33 GLU B 315 LEU B 334 1 20 HELIX 34 34 CYS B 344 GLY B 349 1 6 HELIX 35 35 ASP B 379 ASN B 386 1 8 HELIX 36 36 THR B 410 HIS B 421 1 12 HELIX 37 37 PRO B 431 VAL B 433 5 3 HELIX 38 38 LEU B 434 GLY B 439 1 6 SHEET 1 A10 VAL A 124 TRP A 129 0 SHEET 2 A10 TYR A 338 ASN A 342 -1 O ASN A 342 N VAL A 124 SHEET 3 A10 LYS A 354 MET A 362 -1 O GLU A 359 N ARG A 339 SHEET 4 A10 LYS A 367 ASN A 376 -1 O ARG A 369 N ALA A 360 SHEET 5 A10 HIS A 401 ALA A 409 -1 O ASN A 404 N SER A 375 SHEET 6 A10 GLN A 301 SER A 311 -1 N GLN A 307 O SER A 405 SHEET 7 A10 LEU A 273 PHE A 282 -1 N GLY A 277 O GLU A 306 SHEET 8 A10 THR A 213 ILE A 216 1 N THR A 213 O LEU A 274 SHEET 9 A10 TYR B 187 LEU B 189 -1 O LEU B 188 N ILE A 216 SHEET 10 A10 ALA B 172 ASP B 173 -1 N ASP B 173 O TYR B 187 SHEET 1 B 2 ALA A 132 TRP A 135 0 SHEET 2 B 2 TYR A 152 LEU A 155 1 O LEU A 155 N VAL A 134 SHEET 1 C10 ALA A 172 ASP A 173 0 SHEET 2 C10 TYR A 187 LEU A 189 -1 O TYR A 187 N ASP A 173 SHEET 3 C10 THR B 213 ILE B 216 -1 O ILE B 216 N LEU A 188 SHEET 4 C10 LEU B 273 PHE B 282 1 O LEU B 274 N THR B 213 SHEET 5 C10 GLN B 301 SER B 311 -1 O PHE B 308 N TYR B 275 SHEET 6 C10 HIS B 401 ALA B 409 -1 O ILE B 408 N VAL B 305 SHEET 7 C10 LYS B 367 ASN B 376 -1 N SER B 375 O ASN B 404 SHEET 8 C10 LYS B 354 MET B 362 -1 N TYR B 356 O ALA B 374 SHEET 9 C10 TYR B 338 ASN B 342 -1 N ARG B 339 O GLU B 359 SHEET 10 C10 VAL B 124 TRP B 129 -1 N VAL B 124 O ASN B 342 SHEET 1 D 2 MET A 220 VAL A 221 0 SHEET 2 D 2 TYR A 248 LEU A 249 -1 O TYR A 248 N VAL A 221 SHEET 1 E 3 GLU A 264 ASP A 267 0 SHEET 2 E 3 ILE A 387 ARG A 390 1 O ARG A 388 N LEU A 266 SHEET 3 E 3 ARG A 398 TYR A 399 -1 O ARG A 398 N PHE A 389 SHEET 1 F 2 VAL A 428 ARG A 429 0 SHEET 2 F 2 GLU A 442 ILE A 443 -1 O ILE A 443 N VAL A 428 SHEET 1 G 2 ALA B 132 TRP B 135 0 SHEET 2 G 2 TYR B 152 LEU B 155 1 O GLU B 153 N VAL B 134 SHEET 1 H 2 MET B 220 VAL B 221 0 SHEET 2 H 2 TYR B 248 LEU B 249 -1 O TYR B 248 N VAL B 221 SHEET 1 I 3 GLU B 264 ASP B 267 0 SHEET 2 I 3 ILE B 387 ARG B 390 1 O ARG B 388 N LEU B 266 SHEET 3 I 3 ARG B 398 TYR B 399 -1 O ARG B 398 N PHE B 389 SHEET 1 J 2 VAL B 428 ARG B 429 0 SHEET 2 J 2 GLU B 442 ILE B 443 -1 O ILE B 443 N VAL B 428 CISPEP 1 LEU A 271 PRO A 272 0 -0.26 CISPEP 2 LEU B 271 PRO B 272 0 -0.07 SITE 1 AC1 4 SER A 183 ARG A 184 ALA A 289 HIS A 300 SITE 1 AC2 5 LYS A 291 ASP A 292 THR A 293 ARG A 298 SITE 2 AC2 5 ARG A 369 SITE 1 AC3 6 PHE A 297 ARG A 298 ARG A 369 GLU A 370 SITE 2 AC3 6 ARG A 412 HOH A2010 SITE 1 AC4 3 ASP A 173 PHE A 174 ALA A 175 SITE 1 AC5 18 THR A 252 GLU A 254 ARG A 283 GLU A 285 SITE 2 AC5 18 PHE A 297 ARG A 298 VAL A 299 PHE A 302 SITE 3 AC5 18 GLU A 306 GLU A 370 VAL A 371 VAL A 372 SITE 4 AC5 18 SER A 373 ASN A 404 THR A 406 ALA A 409 SITE 5 AC5 18 SER A 411 ARG A 412 SITE 1 AC6 4 SER B 183 ARG B 184 ALA B 289 HIS B 300 SITE 1 AC7 6 LYS B 291 ASP B 292 THR B 293 PHE B 297 SITE 2 AC7 6 ARG B 298 ARG B 369 SITE 1 AC8 4 ARG B 298 GLU B 370 ARG B 412 HOH B2086 SITE 1 AC9 19 THR B 252 GLU B 254 ARG B 283 GLU B 285 SITE 2 AC9 19 PHE B 297 ARG B 298 VAL B 299 PHE B 302 SITE 3 AC9 19 LYS B 304 GLU B 306 GLU B 370 VAL B 371 SITE 4 AC9 19 VAL B 372 SER B 373 ASN B 404 THR B 406 SITE 5 AC9 19 ALA B 409 SER B 411 ARG B 412 CRYST1 96.038 120.037 126.508 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007905 0.00000