data_2DQ5 # _entry.id 2DQ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DQ5 pdb_00002dq5 10.2210/pdb2dq5/pdb RCSB RCSB025710 ? ? WWPDB D_1000025710 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1FRE _pdbx_database_related.details 'XNF-7; first described bbox2 domain' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DQ5 _pdbx_database_status.recvd_initial_deposition_date 2006-05-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Massiah, M.A.' 1 'Matts, J.A.B.' 2 'Short, K.M.' 3 'Simmons, B.N.' 4 'Singireddy, S.' 5 'Zou, J.' 6 'Cox, T.C.' 7 # _citation.id primary _citation.title 'Solution Structure of the MID1 B-box2 CHC(D/C)C(2)H(2) Zinc-binding Domain: Insights into an Evolutionarily Conserved RING Fold' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 369 _citation.page_first 1 _citation.page_last 10 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17428496 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.03.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Massiah, M.A.' 1 ? primary 'Matts, J.A.B.' 2 ? primary 'Short, K.M.' 3 ? primary 'Simmons, B.N.' 4 ? primary 'Singireddy, S.' 5 ? primary 'Yi, Z.' 6 ? primary 'Cox, T.C.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Midline-1 5390.228 1 6.3.2.- ? 'Bbox2 domain' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Tripartite motif protein 18, Putative transcription factor XPRF, Midin, RING finger protein 59, Midline 1 RING finger protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSE _entity_poly.pdbx_seq_one_letter_code_can SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 ILE n 1 4 ARG n 1 5 GLY n 1 6 LEU n 1 7 MET n 1 8 CYS n 1 9 LEU n 1 10 GLU n 1 11 HIS n 1 12 GLU n 1 13 ASP n 1 14 GLU n 1 15 LYS n 1 16 VAL n 1 17 ASN n 1 18 MET n 1 19 TYR n 1 20 CYS n 1 21 VAL n 1 22 THR n 1 23 ASP n 1 24 ASP n 1 25 GLN n 1 26 LEU n 1 27 ILE n 1 28 CYS n 1 29 ALA n 1 30 LEU n 1 31 CYS n 1 32 LYS n 1 33 LEU n 1 34 VAL n 1 35 GLY n 1 36 ARG n 1 37 HIS n 1 38 ARG n 1 39 ASP n 1 40 HIS n 1 41 GLN n 1 42 VAL n 1 43 ALA n 1 44 ALA n 1 45 LEU n 1 46 SER n 1 47 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene MID1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRI18_HUMAN _struct_ref.pdbx_db_accession O15344 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSE _struct_ref.pdbx_align_begin 168 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DQ5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 47 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O15344 _struct_ref_seq.db_align_beg 168 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 214 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 168 _struct_ref_seq.pdbx_auth_seq_align_end 214 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '15N-H1 HSQC' 1 2 1 'HNCA and HNCACB' 1 3 1 3D-1H-15N-15N-HSQC-NOESY-HSQC 1 4 1 '1H-15N-NOESY-HSQC and 1H-13C-NOESY-HSQC' 1 5 1 '15N-1H HSQC' 1 6 1 1H-13C-HCCH-TOCSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 294 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength '50mM Tris-HCl; 100mM NaCl; 5mM ZnCl2, 10mM beta-mercaptoethanol' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.75-1.0mM 15N & 15N/13C labeled BBOX2; 50mM Tris-HCL, 100mM NaCl, 1mM ZnCl2, 10mM beta-mercaptoethanol; 2% sodium azide; 90% H2O, 10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DQ5 _pdbx_nmr_refine.method 'torsion angle dynamics, low target function' _pdbx_nmr_refine.details ;A total of 200 random structures were calculated with CYANA2.1 using a fast torsion angle dynamics algorithm and the best structures were selected based on their low target function (less 1), no NOE violation less than 0.2 Ang, vdw < 0.25, dihedral <3o. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DQ5 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 16 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DQ5 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure, lowest energy, fewest violations, closest to the average' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing NMRPipe ? 'Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G. Pfeifer, J., Bax, A.' 1 'data analysis' Sparky 3.110 'Goddard, T.D., Kneller, D.G.' 2 'data analysis' TALOS ? 'Cornilescu, G. Delaglio, F., Bax, A.' 3 refinement CYANA 2.1 'Guentert, P.' 4 # _exptl.entry_id 2DQ5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DQ5 _struct.title 'solution structure of the Mid1 B Box2 Chc(D/C)C2H2 Zinc-Binding Domain: insights into an evolutionary conserved ring fold' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DQ5 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'E3 Ligase, RING like, Zinc coordination, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id CYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 28 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id VAL _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 34 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id CYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 195 _struct_conf.end_auth_comp_id VAL _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 201 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 8 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 175 A ZN 1175 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc2 metalc ? ? A HIS 11 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 178 A ZN 1175 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc3 metalc ? ? A CYS 20 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 187 A ZN 1187 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc4 metalc ? ? A ASP 23 OD1 ? ? ? 1_555 C ZN . ZN ? ? A ASP 190 A ZN 1187 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc5 metalc ? ? A CYS 28 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 195 A ZN 1175 1_555 ? ? ? ? ? ? ? 2.444 ? ? metalc6 metalc ? ? A CYS 31 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 198 A ZN 1175 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc7 metalc ? ? A HIS 37 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 204 A ZN 1187 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc8 metalc ? ? A HIS 40 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 207 A ZN 1187 1_555 ? ? ? ? ? ? ? 2.071 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 18 ? CYS A 20 ? MET A 185 CYS A 187 A 2 GLN A 25 ? ILE A 27 ? GLN A 192 ILE A 194 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id MET _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 18 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id MET _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 185 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 27 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 194 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1175 ? 4 'BINDING SITE FOR RESIDUE ZN A 1175' AC2 Software A ZN 1187 ? 4 'BINDING SITE FOR RESIDUE ZN A 1187' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 8 ? CYS A 175 . ? 1_555 ? 2 AC1 4 HIS A 11 ? HIS A 178 . ? 1_555 ? 3 AC1 4 CYS A 28 ? CYS A 195 . ? 1_555 ? 4 AC1 4 CYS A 31 ? CYS A 198 . ? 1_555 ? 5 AC2 4 CYS A 20 ? CYS A 187 . ? 1_555 ? 6 AC2 4 ASP A 23 ? ASP A 190 . ? 1_555 ? 7 AC2 4 HIS A 37 ? HIS A 204 . ? 1_555 ? 8 AC2 4 HIS A 40 ? HIS A 207 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DQ5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DQ5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 168 168 SER SER A . n A 1 2 HIS 2 169 169 HIS HIS A . n A 1 3 ILE 3 170 170 ILE ILE A . n A 1 4 ARG 4 171 171 ARG ARG A . n A 1 5 GLY 5 172 172 GLY GLY A . n A 1 6 LEU 6 173 173 LEU LEU A . n A 1 7 MET 7 174 174 MET MET A . n A 1 8 CYS 8 175 175 CYS CYS A . n A 1 9 LEU 9 176 176 LEU LEU A . n A 1 10 GLU 10 177 177 GLU GLU A . n A 1 11 HIS 11 178 178 HIS HIS A . n A 1 12 GLU 12 179 179 GLU GLU A . n A 1 13 ASP 13 180 180 ASP ASP A . n A 1 14 GLU 14 181 181 GLU GLU A . n A 1 15 LYS 15 182 182 LYS LYS A . n A 1 16 VAL 16 183 183 VAL VAL A . n A 1 17 ASN 17 184 184 ASN ASN A . n A 1 18 MET 18 185 185 MET MET A . n A 1 19 TYR 19 186 186 TYR TYR A . n A 1 20 CYS 20 187 187 CYS CYS A . n A 1 21 VAL 21 188 188 VAL VAL A . n A 1 22 THR 22 189 189 THR THR A . n A 1 23 ASP 23 190 190 ASP ASP A . n A 1 24 ASP 24 191 191 ASP ASP A . n A 1 25 GLN 25 192 192 GLN GLN A . n A 1 26 LEU 26 193 193 LEU LEU A . n A 1 27 ILE 27 194 194 ILE ILE A . n A 1 28 CYS 28 195 195 CYS CYS A . n A 1 29 ALA 29 196 196 ALA ALA A . n A 1 30 LEU 30 197 197 LEU LEU A . n A 1 31 CYS 31 198 198 CYS CYS A . n A 1 32 LYS 32 199 199 LYS LYS A . n A 1 33 LEU 33 200 200 LEU LEU A . n A 1 34 VAL 34 201 201 VAL VAL A . n A 1 35 GLY 35 202 202 GLY GLY A . n A 1 36 ARG 36 203 203 ARG ARG A . n A 1 37 HIS 37 204 204 HIS HIS A . n A 1 38 ARG 38 205 205 ARG ARG A . n A 1 39 ASP 39 206 206 ASP ASP A . n A 1 40 HIS 40 207 207 HIS HIS A . n A 1 41 GLN 41 208 208 GLN GLN A . n A 1 42 VAL 42 209 209 VAL VAL A . n A 1 43 ALA 43 210 210 ALA ALA A . n A 1 44 ALA 44 211 211 ALA ALA A . n A 1 45 LEU 45 212 212 LEU LEU A . n A 1 46 SER 46 213 213 SER SER A . n A 1 47 GLU 47 214 214 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 1175 1175 ZN ZN A . C 2 ZN 1 1187 1187 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 175 ? 1_555 ZN ? B ZN . ? A ZN 1175 ? 1_555 ND1 ? A HIS 11 ? A HIS 178 ? 1_555 116.6 ? 2 SG ? A CYS 8 ? A CYS 175 ? 1_555 ZN ? B ZN . ? A ZN 1175 ? 1_555 SG ? A CYS 28 ? A CYS 195 ? 1_555 106.8 ? 3 ND1 ? A HIS 11 ? A HIS 178 ? 1_555 ZN ? B ZN . ? A ZN 1175 ? 1_555 SG ? A CYS 28 ? A CYS 195 ? 1_555 111.4 ? 4 SG ? A CYS 8 ? A CYS 175 ? 1_555 ZN ? B ZN . ? A ZN 1175 ? 1_555 SG ? A CYS 31 ? A CYS 198 ? 1_555 106.7 ? 5 ND1 ? A HIS 11 ? A HIS 178 ? 1_555 ZN ? B ZN . ? A ZN 1175 ? 1_555 SG ? A CYS 31 ? A CYS 198 ? 1_555 111.6 ? 6 SG ? A CYS 28 ? A CYS 195 ? 1_555 ZN ? B ZN . ? A ZN 1175 ? 1_555 SG ? A CYS 31 ? A CYS 198 ? 1_555 102.6 ? 7 SG ? A CYS 20 ? A CYS 187 ? 1_555 ZN ? C ZN . ? A ZN 1187 ? 1_555 OD1 ? A ASP 23 ? A ASP 190 ? 1_555 112.5 ? 8 SG ? A CYS 20 ? A CYS 187 ? 1_555 ZN ? C ZN . ? A ZN 1187 ? 1_555 ND1 ? A HIS 37 ? A HIS 204 ? 1_555 122.4 ? 9 OD1 ? A ASP 23 ? A ASP 190 ? 1_555 ZN ? C ZN . ? A ZN 1187 ? 1_555 ND1 ? A HIS 37 ? A HIS 204 ? 1_555 114.7 ? 10 SG ? A CYS 20 ? A CYS 187 ? 1_555 ZN ? C ZN . ? A ZN 1187 ? 1_555 ND1 ? A HIS 40 ? A HIS 207 ? 1_555 122.0 ? 11 OD1 ? A ASP 23 ? A ASP 190 ? 1_555 ZN ? C ZN . ? A ZN 1187 ? 1_555 ND1 ? A HIS 40 ? A HIS 207 ? 1_555 84.4 ? 12 ND1 ? A HIS 37 ? A HIS 204 ? 1_555 ZN ? C ZN . ? A ZN 1187 ? 1_555 ND1 ? A HIS 40 ? A HIS 207 ? 1_555 93.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.value' 15 4 'Structure model' '_struct_conn.pdbx_dist_value' 16 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 169 ? ? -168.34 65.47 2 1 LEU A 173 ? ? -119.09 56.96 3 1 ASP A 180 ? ? -94.95 34.71 4 1 VAL A 183 ? ? -53.59 174.52 5 1 ASN A 184 ? ? -132.83 -40.86 6 1 HIS A 204 ? ? -95.65 37.35 7 1 LEU A 212 ? ? 63.37 105.29 8 2 LEU A 173 ? ? -108.25 74.32 9 2 MET A 174 ? ? -110.14 -169.82 10 2 ASN A 184 ? ? -133.05 -51.19 11 2 HIS A 204 ? ? -95.99 38.68 12 2 SER A 213 ? ? 63.19 -172.02 13 3 ASP A 180 ? ? -97.93 34.41 14 3 VAL A 183 ? ? -53.59 175.17 15 3 ASN A 184 ? ? -131.04 -40.05 16 3 HIS A 204 ? ? -92.36 43.99 17 4 ASP A 180 ? ? -95.88 34.59 18 4 VAL A 183 ? ? -51.86 171.11 19 4 ASN A 184 ? ? -132.45 -39.39 20 4 MET A 185 ? ? -164.07 -169.95 21 4 HIS A 204 ? ? -94.59 38.27 22 5 ARG A 171 ? ? 62.75 179.36 23 5 ASP A 180 ? ? -95.40 34.57 24 5 ASN A 184 ? ? -130.39 -43.09 25 5 HIS A 204 ? ? -96.95 38.64 26 6 LEU A 173 ? ? 63.53 106.22 27 6 ASP A 180 ? ? -95.54 34.71 28 6 HIS A 204 ? ? -90.04 47.94 29 6 SER A 213 ? ? -175.88 114.39 30 7 ASP A 180 ? ? -95.23 34.78 31 7 HIS A 204 ? ? -94.12 39.91 32 7 LEU A 212 ? ? 63.07 177.98 33 8 ARG A 171 ? ? -97.10 38.10 34 8 ASP A 180 ? ? -95.44 34.62 35 8 GLU A 181 ? ? -160.75 112.98 36 8 VAL A 183 ? ? -51.94 171.25 37 8 ASN A 184 ? ? -132.33 -38.72 38 8 HIS A 204 ? ? -94.55 38.36 39 9 ARG A 171 ? ? 54.46 90.26 40 9 LEU A 173 ? ? -143.61 46.56 41 9 ASP A 180 ? ? -94.31 34.72 42 9 VAL A 183 ? ? -51.51 170.56 43 9 ASN A 184 ? ? -131.85 -38.71 44 9 HIS A 204 ? ? -94.78 37.95 45 10 LEU A 173 ? ? 63.54 106.40 46 10 MET A 174 ? ? -110.04 -169.93 47 10 ASP A 180 ? ? -95.55 34.60 48 10 ASN A 184 ? ? -134.05 -50.87 49 10 HIS A 204 ? ? -95.47 38.84 50 11 ASP A 180 ? ? -95.45 34.60 51 11 GLU A 181 ? ? -151.47 89.29 52 11 MET A 185 ? ? -162.58 -168.54 53 11 HIS A 204 ? ? -95.97 39.69 54 11 ALA A 210 ? ? -105.92 -169.43 55 12 ARG A 171 ? ? 63.14 95.13 56 12 ASP A 180 ? ? -93.91 35.01 57 12 MET A 185 ? ? -160.21 -168.45 58 12 HIS A 204 ? ? -96.71 39.38 59 12 ALA A 210 ? ? -107.91 79.98 60 12 LEU A 212 ? ? 59.15 -177.10 61 12 SER A 213 ? ? -163.44 107.90 62 13 LEU A 173 ? ? -58.33 98.96 63 13 ASP A 180 ? ? -95.44 34.73 64 13 HIS A 204 ? ? -97.86 39.56 65 14 ILE A 170 ? ? 70.99 -70.41 66 14 ARG A 171 ? ? -120.44 -50.68 67 14 LEU A 173 ? ? -108.31 73.58 68 14 MET A 174 ? ? -110.44 -169.48 69 14 ASP A 180 ? ? -95.50 34.58 70 14 HIS A 204 ? ? -93.80 40.73 71 15 ASP A 180 ? ? -93.23 35.10 72 15 HIS A 204 ? ? -99.28 39.86 73 16 HIS A 169 ? ? -152.61 -54.79 74 16 ILE A 170 ? ? -110.47 72.36 75 16 ASP A 180 ? ? -93.99 34.98 76 16 MET A 185 ? ? -162.43 -168.27 77 16 HIS A 204 ? ? -96.26 47.49 78 16 ALA A 210 ? ? -109.34 79.84 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #