data_2DS0 # _entry.id 2DS0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DS0 pdb_00002ds0 10.2210/pdb2ds0/pdb RCSB RCSB025773 ? ? WWPDB D_1000025773 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2AO3 'The wild-type lectin in complex with N-acetylgalactosamine' unspecified PDB 2D12 'The wild-type lectin in complex with lactose' unspecified PDB 2DRY . unspecified PDB 2DRZ . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DS0 _pdbx_database_status.recvd_initial_deposition_date 2006-06-16 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, R.' 1 'Fujimoto, Z.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Tailoring a novel sialic acid-binding lectin from a ricin-B chain-like galactose-binding protein by natural evolution-mimicry' J.Biochem. 141 389 399 2007 ? JP 0021-924X ? ? 17234683 10.1093/jb/mvm043 1 'Sugar complex structures of the galactose-binding lectin EW29 C-half domain from the earthworm Lumbricus terrestris' 'To be Published' ? ? ? 2006 ? ? ? 0353 ? ? ? 2 ;Crystallization and preliminary X-ray crystallographic studies of the C-terminal domain of galactose-binding lectin EW29 from the earthworm Lubmricus terrestris ; 'ACTA CRYSTALLOGR.,SECT.D' 60 1895 1896 2004 ABCRE6 DK 0907-4449 0766 ? 15388944 10.1107/S0907444904018979 3 'In vitro selection of carbohydrate-binding protein by using advanced ribosome display' 'To be Published' ? ? ? 2006 ? ? ? 0353 ? ? ? 4 ;Novel galactose-binding proteins in Annelida. Characterization of 29-kDa tandem repeat-type lectins from the earthworm Lumbricus terrestris ; J.Biol.Chem. 273 14450 14460 1998 JBCHA3 US 0021-9258 0071 ? 9603958 10.1074/jbc.273.23.14450 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yabe, R.' 1 ? primary 'Suzuki, R.' 2 ? primary 'Kuno, A.' 3 ? primary 'Fujimoto, Z.' 4 ? primary 'Jigami, Y.' 5 ? primary 'Hirabayashi, J.' 6 ? 1 'Suzuki, R.' 7 ? 1 'Kuno, A.' 8 ? 1 'Hasegawa, T.' 9 ? 1 'Hirabayashi, J.' 10 ? 1 'Kasai, K.' 11 ? 1 'Momma, M.' 12 ? 1 'Fujimoto, Z.' 13 ? 2 'Suzuki, R.' 14 ? 2 'Fujimoto, Z.' 15 ? 2 'Kuno, A.' 16 ? 2 'Hirabayashi, J.' 17 ? 2 'Kasai, K.' 18 ? 2 'Hasegawa, T.' 19 ? 3 'Yabe, R.' 20 ? 3 'Kuno, A.' 21 ? 3 'Sawata, Y.S.' 22 ? 3 'Hirabayashi, J.' 23 ? 3 'Jigamai, Y.' 24 ? 3 'Taira, K.' 25 ? 3 'Hasegawa, T.' 26 ? 4 'Hirabayashi, J.' 27 ? 4 'Dutta, S.K.' 28 ? 4 'Kasai, K.' 29 ? # _cell.entry_id 2DS0 _cell.length_a 40.435 _cell.length_b 87.684 _cell.length_c 41.384 _cell.angle_alpha 90.00 _cell.angle_beta 117.36 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DS0 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '29-kDa galactose-binding lectin' 14432.154 2 ? E148G,I227N,D230G,I231V,E237G,G239S 'C-TERMINAL DOMAIN' ? 2 branched man 'N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose' 633.552 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 4 water nat water 18.015 211 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name "6'-sialyl-lactose" # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PKFFYIKSELNGKVLDIGGQNPAPGSKIITWDQKKGPTAVNQLWYTDQQGVIRSKLNDFAIDASHEQIETQPFDPNNPKR AWIVSGNTIAQLSDRDNVLGVIKSDKGASAHICAWKQHGGPNQKFIIESE ; _entity_poly.pdbx_seq_one_letter_code_can ;PKFFYIKSELNGKVLDIGGQNPAPGSKIITWDQKKGPTAVNQLWYTDQQGVIRSKLNDFAIDASHEQIETQPFDPNNPKR AWIVSGNTIAQLSDRDNVLGVIKSDKGASAHICAWKQHGGPNQKFIIESE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LYS n 1 3 PHE n 1 4 PHE n 1 5 TYR n 1 6 ILE n 1 7 LYS n 1 8 SER n 1 9 GLU n 1 10 LEU n 1 11 ASN n 1 12 GLY n 1 13 LYS n 1 14 VAL n 1 15 LEU n 1 16 ASP n 1 17 ILE n 1 18 GLY n 1 19 GLY n 1 20 GLN n 1 21 ASN n 1 22 PRO n 1 23 ALA n 1 24 PRO n 1 25 GLY n 1 26 SER n 1 27 LYS n 1 28 ILE n 1 29 ILE n 1 30 THR n 1 31 TRP n 1 32 ASP n 1 33 GLN n 1 34 LYS n 1 35 LYS n 1 36 GLY n 1 37 PRO n 1 38 THR n 1 39 ALA n 1 40 VAL n 1 41 ASN n 1 42 GLN n 1 43 LEU n 1 44 TRP n 1 45 TYR n 1 46 THR n 1 47 ASP n 1 48 GLN n 1 49 GLN n 1 50 GLY n 1 51 VAL n 1 52 ILE n 1 53 ARG n 1 54 SER n 1 55 LYS n 1 56 LEU n 1 57 ASN n 1 58 ASP n 1 59 PHE n 1 60 ALA n 1 61 ILE n 1 62 ASP n 1 63 ALA n 1 64 SER n 1 65 HIS n 1 66 GLU n 1 67 GLN n 1 68 ILE n 1 69 GLU n 1 70 THR n 1 71 GLN n 1 72 PRO n 1 73 PHE n 1 74 ASP n 1 75 PRO n 1 76 ASN n 1 77 ASN n 1 78 PRO n 1 79 LYS n 1 80 ARG n 1 81 ALA n 1 82 TRP n 1 83 ILE n 1 84 VAL n 1 85 SER n 1 86 GLY n 1 87 ASN n 1 88 THR n 1 89 ILE n 1 90 ALA n 1 91 GLN n 1 92 LEU n 1 93 SER n 1 94 ASP n 1 95 ARG n 1 96 ASP n 1 97 ASN n 1 98 VAL n 1 99 LEU n 1 100 GLY n 1 101 VAL n 1 102 ILE n 1 103 LYS n 1 104 SER n 1 105 ASP n 1 106 LYS n 1 107 GLY n 1 108 ALA n 1 109 SER n 1 110 ALA n 1 111 HIS n 1 112 ILE n 1 113 CYS n 1 114 ALA n 1 115 TRP n 1 116 LYS n 1 117 GLN n 1 118 HIS n 1 119 GLY n 1 120 GLY n 1 121 PRO n 1 122 ASN n 1 123 GLN n 1 124 LYS n 1 125 PHE n 1 126 ILE n 1 127 ILE n 1 128 GLU n 1 129 SER n 1 130 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'common earthworm' _entity_src_gen.gene_src_genus Lumbricus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lumbricus terrestris' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6398 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET27 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O96048_LUMTE _struct_ref.pdbx_db_accession O96048 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PKFFYIKSELNGKVLDIEGQNPAPGSKIITWDQKKGPTAVNQLWYTDQQGVIRSKLNDFAIDASHEQIETQPFDPNNPKR AWIVSGNTIAQLSDRDIVLDIIKSDKEAGAHICAWKQHGGPNQKFIIESE ; _struct_ref.pdbx_align_begin 131 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DS0 A 1 ? 130 ? O96048 131 ? 260 ? 131 260 2 1 2DS0 B 1 ? 130 ? O96048 131 ? 260 ? 131 260 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DS0 GLY A 18 ? UNP O96048 GLU 148 'engineered mutation' 148 1 1 2DS0 ASN A 97 ? UNP O96048 ILE 227 'engineered mutation' 227 2 1 2DS0 GLY A 100 ? UNP O96048 ASP 230 'engineered mutation' 230 3 1 2DS0 VAL A 101 ? UNP O96048 ILE 231 'engineered mutation' 231 4 1 2DS0 GLY A 107 ? UNP O96048 GLU 237 'engineered mutation' 237 5 1 2DS0 SER A 109 ? UNP O96048 GLY 239 'engineered mutation' 239 6 2 2DS0 GLY B 18 ? UNP O96048 GLU 148 'engineered mutation' 148 7 2 2DS0 ASN B 97 ? UNP O96048 ILE 227 'engineered mutation' 227 8 2 2DS0 GLY B 100 ? UNP O96048 ASP 230 'engineered mutation' 230 9 2 2DS0 VAL B 101 ? UNP O96048 ILE 231 'engineered mutation' 231 10 2 2DS0 GLY B 107 ? UNP O96048 GLU 237 'engineered mutation' 237 11 2 2DS0 SER B 109 ? UNP O96048 GLY 239 'engineered mutation' 239 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' 'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DS0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_details ;20% PEG8000, 0.2M sodium chloride, 0.1M phosphate-citrate, 15mg/ml 6'-sialyllactose, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS VII' _diffrn_detector.pdbx_collection_date 2006-02-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2DS0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.80 _reflns.number_obs 22875 _reflns.number_all 44954 _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 14.3 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 93.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DS0 _refine.ls_number_reflns_obs 22852 _refine.ls_number_reflns_all 23791 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 964768.94 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.88 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 95.7 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1109 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 17.4 _refine.aniso_B[1][1] -0.16 _refine.aniso_B[2][2] -0.08 _refine.aniso_B[3][3] 0.24 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.54 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.327187 _refine.solvent_model_param_bsol 36.2003 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2D12' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DS0 _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.07 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2040 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 111 _refine_hist.number_atoms_solvent 211 _refine_hist.number_atoms_total 2362 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 22.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.71 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 3415 _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.percent_reflns_obs 90.8 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 171 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2202 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 cis_peptide4F61SL.param ion.top 'X-RAY DIFFRACTION' 3 carbo_rep.param water.top 'X-RAY DIFFRACTION' 4 water_rep.param carbohydrate.top 'X-RAY DIFFRACTION' 5 ion.param dna-rna.top 'X-RAY DIFFRACTION' # _struct.entry_id 2DS0 _struct.title ;Crystal structure of the earthworm lectin C-terminal domain mutant in complex with 6'-sialyllactose ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DS0 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'EARTHWORM LUMBRICUS TERRESTRIS, SIALIC ACID, GALACTOSE, IN VITRO EVOLUTION, BETA-TREFOIL FOLD, SUGAR COMPLEX, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 19 ? ASN A 21 ? GLY A 149 ASN A 151 5 ? 3 HELX_P HELX_P2 2 GLY A 36 ? GLN A 42 ? GLY A 166 GLN A 172 5 ? 7 HELX_P HELX_P3 3 ASN A 77 ? ARG A 80 ? ASN A 207 ARG A 210 5 ? 4 HELX_P HELX_P4 4 GLY A 120 ? GLN A 123 ? GLY A 250 GLN A 253 5 ? 4 HELX_P HELX_P5 5 GLY B 19 ? ASN B 21 ? GLY B 149 ASN B 151 5 ? 3 HELX_P HELX_P6 6 GLY B 36 ? GLN B 42 ? GLY B 166 GLN B 172 5 ? 7 HELX_P HELX_P7 7 ASN B 77 ? ARG B 80 ? ASN B 207 ARG B 210 5 ? 4 HELX_P HELX_P8 8 GLY B 120 ? GLN B 123 ? GLY B 250 GLN B 253 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C BGC . O4 ? ? ? 1_555 C GAL . C1 ? ? C BGC 1 C GAL 2 1_555 ? ? ? ? ? ? ? 1.388 ? ? covale2 covale both ? C GAL . O6 ? ? ? 1_555 C SIA . C2 ? ? C GAL 2 C SIA 3 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale3 covale both ? D BGC . O4 ? ? ? 1_555 D GAL . C1 ? ? D BGC 1 D GAL 2 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale4 covale both ? D GAL . O6 ? ? ? 1_555 D SIA . C2 ? ? D GAL 2 D SIA 3 1_555 ? ? ? ? ? ? ? 1.385 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 4 ? F ? 2 ? G ? 2 ? H ? 2 ? I ? 2 ? J ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel J 1 2 ? anti-parallel J 2 3 ? anti-parallel J 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 4 ? SER A 8 ? PHE A 134 SER A 138 A 2 PHE A 125 ? SER A 129 ? PHE A 255 SER A 259 B 1 VAL A 14 ? ILE A 17 ? VAL A 144 ILE A 147 B 2 ILE A 28 ? TRP A 31 ? ILE A 158 TRP A 161 C 1 TRP A 44 ? THR A 46 ? TRP A 174 THR A 176 C 2 ILE A 52 ? SER A 54 ? ILE A 182 SER A 184 D 1 ALA A 60 ? ASP A 62 ? ALA A 190 ASP A 192 D 2 GLU A 69 ? GLN A 71 ? GLU A 199 GLN A 201 E 1 TRP A 82 ? SER A 85 ? TRP A 212 SER A 215 E 2 THR A 88 ? GLN A 91 ? THR A 218 GLN A 221 E 3 ASP A 94 ? ILE A 102 ? ASP A 224 ILE A 232 E 4 HIS A 111 ? LYS A 116 ? HIS A 241 LYS A 246 F 1 PHE B 4 ? SER B 8 ? PHE B 134 SER B 138 F 2 PHE B 125 ? SER B 129 ? PHE B 255 SER B 259 G 1 VAL B 14 ? ILE B 17 ? VAL B 144 ILE B 147 G 2 ILE B 28 ? TRP B 31 ? ILE B 158 TRP B 161 H 1 TRP B 44 ? THR B 46 ? TRP B 174 THR B 176 H 2 ILE B 52 ? SER B 54 ? ILE B 182 SER B 184 I 1 ALA B 60 ? ASP B 62 ? ALA B 190 ASP B 192 I 2 GLU B 69 ? GLN B 71 ? GLU B 199 GLN B 201 J 1 TRP B 82 ? SER B 85 ? TRP B 212 SER B 215 J 2 THR B 88 ? GLN B 91 ? THR B 218 GLN B 221 J 3 ASP B 94 ? ILE B 102 ? ASP B 224 ILE B 232 J 4 HIS B 111 ? LYS B 116 ? HIS B 241 LYS B 246 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 5 ? N TYR A 135 O GLU A 128 ? O GLU A 258 B 1 2 N ASP A 16 ? N ASP A 146 O ILE A 29 ? O ILE A 159 C 1 2 N TYR A 45 ? N TYR A 175 O ARG A 53 ? O ARG A 183 D 1 2 N ASP A 62 ? N ASP A 192 O GLU A 69 ? O GLU A 199 E 1 2 N SER A 85 ? N SER A 215 O THR A 88 ? O THR A 218 E 2 3 N ILE A 89 ? N ILE A 219 O LEU A 99 ? O LEU A 229 E 3 4 N ILE A 102 ? N ILE A 232 O HIS A 111 ? O HIS A 241 F 1 2 N TYR B 5 ? N TYR B 135 O GLU B 128 ? O GLU B 258 G 1 2 N ASP B 16 ? N ASP B 146 O ILE B 29 ? O ILE B 159 H 1 2 N TYR B 45 ? N TYR B 175 O ARG B 53 ? O ARG B 183 I 1 2 N ASP B 62 ? N ASP B 192 O GLU B 69 ? O GLU B 199 J 1 2 N SER B 85 ? N SER B 215 O THR B 88 ? O THR B 218 J 2 3 N ILE B 89 ? N ILE B 219 O LEU B 99 ? O LEU B 229 J 3 4 N GLY B 100 ? N GLY B 230 O CYS B 113 ? O CYS B 243 # _database_PDB_matrix.entry_id 2DS0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DS0 _atom_sites.fract_transf_matrix[1][1] 0.024731 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.012797 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011405 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027207 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 131 131 PRO PRO A . n A 1 2 LYS 2 132 132 LYS LYS A . n A 1 3 PHE 3 133 133 PHE PHE A . n A 1 4 PHE 4 134 134 PHE PHE A . n A 1 5 TYR 5 135 135 TYR TYR A . n A 1 6 ILE 6 136 136 ILE ILE A . n A 1 7 LYS 7 137 137 LYS LYS A . n A 1 8 SER 8 138 138 SER SER A . n A 1 9 GLU 9 139 139 GLU GLU A . n A 1 10 LEU 10 140 140 LEU LEU A . n A 1 11 ASN 11 141 141 ASN ASN A . n A 1 12 GLY 12 142 142 GLY GLY A . n A 1 13 LYS 13 143 143 LYS LYS A . n A 1 14 VAL 14 144 144 VAL VAL A . n A 1 15 LEU 15 145 145 LEU LEU A . n A 1 16 ASP 16 146 146 ASP ASP A . n A 1 17 ILE 17 147 147 ILE ILE A . n A 1 18 GLY 18 148 148 GLY GLY A . n A 1 19 GLY 19 149 149 GLY GLY A . n A 1 20 GLN 20 150 150 GLN GLN A . n A 1 21 ASN 21 151 151 ASN ASN A . n A 1 22 PRO 22 152 152 PRO PRO A . n A 1 23 ALA 23 153 153 ALA ALA A . n A 1 24 PRO 24 154 154 PRO PRO A . n A 1 25 GLY 25 155 155 GLY GLY A . n A 1 26 SER 26 156 156 SER SER A . n A 1 27 LYS 27 157 157 LYS LYS A . n A 1 28 ILE 28 158 158 ILE ILE A . n A 1 29 ILE 29 159 159 ILE ILE A . n A 1 30 THR 30 160 160 THR THR A . n A 1 31 TRP 31 161 161 TRP TRP A . n A 1 32 ASP 32 162 162 ASP ASP A . n A 1 33 GLN 33 163 163 GLN GLN A . n A 1 34 LYS 34 164 164 LYS LYS A . n A 1 35 LYS 35 165 165 LYS LYS A . n A 1 36 GLY 36 166 166 GLY GLY A . n A 1 37 PRO 37 167 167 PRO PRO A . n A 1 38 THR 38 168 168 THR THR A . n A 1 39 ALA 39 169 169 ALA ALA A . n A 1 40 VAL 40 170 170 VAL VAL A . n A 1 41 ASN 41 171 171 ASN ASN A . n A 1 42 GLN 42 172 172 GLN GLN A . n A 1 43 LEU 43 173 173 LEU LEU A . n A 1 44 TRP 44 174 174 TRP TRP A . n A 1 45 TYR 45 175 175 TYR TYR A . n A 1 46 THR 46 176 176 THR THR A . n A 1 47 ASP 47 177 177 ASP ASP A . n A 1 48 GLN 48 178 178 GLN GLN A . n A 1 49 GLN 49 179 179 GLN GLN A . n A 1 50 GLY 50 180 180 GLY GLY A . n A 1 51 VAL 51 181 181 VAL VAL A . n A 1 52 ILE 52 182 182 ILE ILE A . n A 1 53 ARG 53 183 183 ARG ARG A . n A 1 54 SER 54 184 184 SER SER A . n A 1 55 LYS 55 185 185 LYS LYS A . n A 1 56 LEU 56 186 186 LEU LEU A . n A 1 57 ASN 57 187 187 ASN ASN A . n A 1 58 ASP 58 188 188 ASP ASP A . n A 1 59 PHE 59 189 189 PHE PHE A . n A 1 60 ALA 60 190 190 ALA ALA A . n A 1 61 ILE 61 191 191 ILE ILE A . n A 1 62 ASP 62 192 192 ASP ASP A . n A 1 63 ALA 63 193 193 ALA ALA A . n A 1 64 SER 64 194 194 SER SER A . n A 1 65 HIS 65 195 195 HIS HIS A . n A 1 66 GLU 66 196 196 GLU GLU A . n A 1 67 GLN 67 197 197 GLN GLN A . n A 1 68 ILE 68 198 198 ILE ILE A . n A 1 69 GLU 69 199 199 GLU GLU A . n A 1 70 THR 70 200 200 THR THR A . n A 1 71 GLN 71 201 201 GLN GLN A . n A 1 72 PRO 72 202 202 PRO PRO A . n A 1 73 PHE 73 203 203 PHE PHE A . n A 1 74 ASP 74 204 204 ASP ASP A . n A 1 75 PRO 75 205 205 PRO PRO A . n A 1 76 ASN 76 206 206 ASN ASN A . n A 1 77 ASN 77 207 207 ASN ASN A . n A 1 78 PRO 78 208 208 PRO PRO A . n A 1 79 LYS 79 209 209 LYS LYS A . n A 1 80 ARG 80 210 210 ARG ARG A . n A 1 81 ALA 81 211 211 ALA ALA A . n A 1 82 TRP 82 212 212 TRP TRP A . n A 1 83 ILE 83 213 213 ILE ILE A . n A 1 84 VAL 84 214 214 VAL VAL A . n A 1 85 SER 85 215 215 SER SER A . n A 1 86 GLY 86 216 216 GLY GLY A . n A 1 87 ASN 87 217 217 ASN ASN A . n A 1 88 THR 88 218 218 THR THR A . n A 1 89 ILE 89 219 219 ILE ILE A . n A 1 90 ALA 90 220 220 ALA ALA A . n A 1 91 GLN 91 221 221 GLN GLN A . n A 1 92 LEU 92 222 222 LEU LEU A . n A 1 93 SER 93 223 223 SER SER A . n A 1 94 ASP 94 224 224 ASP ASP A . n A 1 95 ARG 95 225 225 ARG ARG A . n A 1 96 ASP 96 226 226 ASP ASP A . n A 1 97 ASN 97 227 227 ASN ASN A . n A 1 98 VAL 98 228 228 VAL VAL A . n A 1 99 LEU 99 229 229 LEU LEU A . n A 1 100 GLY 100 230 230 GLY GLY A . n A 1 101 VAL 101 231 231 VAL VAL A . n A 1 102 ILE 102 232 232 ILE ILE A . n A 1 103 LYS 103 233 233 LYS LYS A . n A 1 104 SER 104 234 234 SER SER A . n A 1 105 ASP 105 235 235 ASP ASP A . n A 1 106 LYS 106 236 236 LYS LYS A . n A 1 107 GLY 107 237 237 GLY GLY A . n A 1 108 ALA 108 238 238 ALA ALA A . n A 1 109 SER 109 239 239 SER SER A . n A 1 110 ALA 110 240 240 ALA ALA A . n A 1 111 HIS 111 241 241 HIS HIS A . n A 1 112 ILE 112 242 242 ILE ILE A . n A 1 113 CYS 113 243 243 CYS CYS A . n A 1 114 ALA 114 244 244 ALA ALA A . n A 1 115 TRP 115 245 245 TRP TRP A . n A 1 116 LYS 116 246 246 LYS LYS A . n A 1 117 GLN 117 247 247 GLN GLN A . n A 1 118 HIS 118 248 248 HIS HIS A . n A 1 119 GLY 119 249 249 GLY GLY A . n A 1 120 GLY 120 250 250 GLY GLY A . n A 1 121 PRO 121 251 251 PRO PRO A . n A 1 122 ASN 122 252 252 ASN ASN A . n A 1 123 GLN 123 253 253 GLN GLN A . n A 1 124 LYS 124 254 254 LYS LYS A . n A 1 125 PHE 125 255 255 PHE PHE A . n A 1 126 ILE 126 256 256 ILE ILE A . n A 1 127 ILE 127 257 257 ILE ILE A . n A 1 128 GLU 128 258 258 GLU GLU A . n A 1 129 SER 129 259 259 SER SER A . n A 1 130 GLU 130 260 260 GLU GLU A . n B 1 1 PRO 1 131 131 PRO PRO B . n B 1 2 LYS 2 132 132 LYS LYS B . n B 1 3 PHE 3 133 133 PHE PHE B . n B 1 4 PHE 4 134 134 PHE PHE B . n B 1 5 TYR 5 135 135 TYR TYR B . n B 1 6 ILE 6 136 136 ILE ILE B . n B 1 7 LYS 7 137 137 LYS LYS B . n B 1 8 SER 8 138 138 SER SER B . n B 1 9 GLU 9 139 139 GLU GLU B . n B 1 10 LEU 10 140 140 LEU LEU B . n B 1 11 ASN 11 141 141 ASN ASN B . n B 1 12 GLY 12 142 142 GLY GLY B . n B 1 13 LYS 13 143 143 LYS LYS B . n B 1 14 VAL 14 144 144 VAL VAL B . n B 1 15 LEU 15 145 145 LEU LEU B . n B 1 16 ASP 16 146 146 ASP ASP B . n B 1 17 ILE 17 147 147 ILE ILE B . n B 1 18 GLY 18 148 148 GLY GLY B . n B 1 19 GLY 19 149 149 GLY GLY B . n B 1 20 GLN 20 150 150 GLN GLN B . n B 1 21 ASN 21 151 151 ASN ASN B . n B 1 22 PRO 22 152 152 PRO PRO B . n B 1 23 ALA 23 153 153 ALA ALA B . n B 1 24 PRO 24 154 154 PRO PRO B . n B 1 25 GLY 25 155 155 GLY GLY B . n B 1 26 SER 26 156 156 SER SER B . n B 1 27 LYS 27 157 157 LYS LYS B . n B 1 28 ILE 28 158 158 ILE ILE B . n B 1 29 ILE 29 159 159 ILE ILE B . n B 1 30 THR 30 160 160 THR THR B . n B 1 31 TRP 31 161 161 TRP TRP B . n B 1 32 ASP 32 162 162 ASP ASP B . n B 1 33 GLN 33 163 163 GLN GLN B . n B 1 34 LYS 34 164 164 LYS LYS B . n B 1 35 LYS 35 165 165 LYS LYS B . n B 1 36 GLY 36 166 166 GLY GLY B . n B 1 37 PRO 37 167 167 PRO PRO B . n B 1 38 THR 38 168 168 THR THR B . n B 1 39 ALA 39 169 169 ALA ALA B . n B 1 40 VAL 40 170 170 VAL VAL B . n B 1 41 ASN 41 171 171 ASN ASN B . n B 1 42 GLN 42 172 172 GLN GLN B . n B 1 43 LEU 43 173 173 LEU LEU B . n B 1 44 TRP 44 174 174 TRP TRP B . n B 1 45 TYR 45 175 175 TYR TYR B . n B 1 46 THR 46 176 176 THR THR B . n B 1 47 ASP 47 177 177 ASP ASP B . n B 1 48 GLN 48 178 178 GLN GLN B . n B 1 49 GLN 49 179 179 GLN GLN B . n B 1 50 GLY 50 180 180 GLY GLY B . n B 1 51 VAL 51 181 181 VAL VAL B . n B 1 52 ILE 52 182 182 ILE ILE B . n B 1 53 ARG 53 183 183 ARG ARG B . n B 1 54 SER 54 184 184 SER SER B . n B 1 55 LYS 55 185 185 LYS LYS B . n B 1 56 LEU 56 186 186 LEU LEU B . n B 1 57 ASN 57 187 187 ASN ASN B . n B 1 58 ASP 58 188 188 ASP ASP B . n B 1 59 PHE 59 189 189 PHE PHE B . n B 1 60 ALA 60 190 190 ALA ALA B . n B 1 61 ILE 61 191 191 ILE ILE B . n B 1 62 ASP 62 192 192 ASP ASP B . n B 1 63 ALA 63 193 193 ALA ALA B . n B 1 64 SER 64 194 194 SER SER B . n B 1 65 HIS 65 195 195 HIS HIS B . n B 1 66 GLU 66 196 196 GLU GLU B . n B 1 67 GLN 67 197 197 GLN GLN B . n B 1 68 ILE 68 198 198 ILE ILE B . n B 1 69 GLU 69 199 199 GLU GLU B . n B 1 70 THR 70 200 200 THR THR B . n B 1 71 GLN 71 201 201 GLN GLN B . n B 1 72 PRO 72 202 202 PRO PRO B . n B 1 73 PHE 73 203 203 PHE PHE B . n B 1 74 ASP 74 204 204 ASP ASP B . n B 1 75 PRO 75 205 205 PRO PRO B . n B 1 76 ASN 76 206 206 ASN ASN B . n B 1 77 ASN 77 207 207 ASN ASN B . n B 1 78 PRO 78 208 208 PRO PRO B . n B 1 79 LYS 79 209 209 LYS LYS B . n B 1 80 ARG 80 210 210 ARG ARG B . n B 1 81 ALA 81 211 211 ALA ALA B . n B 1 82 TRP 82 212 212 TRP TRP B . n B 1 83 ILE 83 213 213 ILE ILE B . n B 1 84 VAL 84 214 214 VAL VAL B . n B 1 85 SER 85 215 215 SER SER B . n B 1 86 GLY 86 216 216 GLY GLY B . n B 1 87 ASN 87 217 217 ASN ASN B . n B 1 88 THR 88 218 218 THR THR B . n B 1 89 ILE 89 219 219 ILE ILE B . n B 1 90 ALA 90 220 220 ALA ALA B . n B 1 91 GLN 91 221 221 GLN GLN B . n B 1 92 LEU 92 222 222 LEU LEU B . n B 1 93 SER 93 223 223 SER SER B . n B 1 94 ASP 94 224 224 ASP ASP B . n B 1 95 ARG 95 225 225 ARG ARG B . n B 1 96 ASP 96 226 226 ASP ASP B . n B 1 97 ASN 97 227 227 ASN ASN B . n B 1 98 VAL 98 228 228 VAL VAL B . n B 1 99 LEU 99 229 229 LEU LEU B . n B 1 100 GLY 100 230 230 GLY GLY B . n B 1 101 VAL 101 231 231 VAL VAL B . n B 1 102 ILE 102 232 232 ILE ILE B . n B 1 103 LYS 103 233 233 LYS LYS B . n B 1 104 SER 104 234 234 SER SER B . n B 1 105 ASP 105 235 235 ASP ASP B . n B 1 106 LYS 106 236 236 LYS LYS B . n B 1 107 GLY 107 237 237 GLY GLY B . n B 1 108 ALA 108 238 238 ALA ALA B . n B 1 109 SER 109 239 239 SER SER B . n B 1 110 ALA 110 240 240 ALA ALA B . n B 1 111 HIS 111 241 241 HIS HIS B . n B 1 112 ILE 112 242 242 ILE ILE B . n B 1 113 CYS 113 243 243 CYS CYS B . n B 1 114 ALA 114 244 244 ALA ALA B . n B 1 115 TRP 115 245 245 TRP TRP B . n B 1 116 LYS 116 246 246 LYS LYS B . n B 1 117 GLN 117 247 247 GLN GLN B . n B 1 118 HIS 118 248 248 HIS HIS B . n B 1 119 GLY 119 249 249 GLY GLY B . n B 1 120 GLY 120 250 250 GLY GLY B . n B 1 121 PRO 121 251 251 PRO PRO B . n B 1 122 ASN 122 252 252 ASN ASN B . n B 1 123 GLN 123 253 253 GLN GLN B . n B 1 124 LYS 124 254 254 LYS LYS B . n B 1 125 PHE 125 255 255 PHE PHE B . n B 1 126 ILE 126 256 256 ILE ILE B . n B 1 127 ILE 127 257 257 ILE ILE B . n B 1 128 GLU 128 258 258 GLU GLU B . n B 1 129 SER 129 259 259 SER SER B . n B 1 130 GLU 130 260 260 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 1 1001 1001 SO4 SO4 A . F 3 SO4 1 1002 1002 SO4 SO4 A . G 3 SO4 1 1003 1003 SO4 SO4 A . H 3 SO4 1 1004 1004 SO4 SO4 A . I 3 SO4 1 1005 1005 SO4 SO4 B . J 4 HOH 1 1005 1005 HOH HOH A . J 4 HOH 2 1006 1006 HOH HOH A . J 4 HOH 3 1007 1007 HOH HOH A . J 4 HOH 4 1008 1008 HOH HOH A . J 4 HOH 5 1009 1009 HOH HOH A . J 4 HOH 6 1010 1010 HOH HOH A . J 4 HOH 7 1011 1011 HOH HOH A . J 4 HOH 8 1012 1012 HOH HOH A . J 4 HOH 9 1013 1013 HOH HOH A . J 4 HOH 10 1014 1014 HOH HOH A . J 4 HOH 11 1015 1015 HOH HOH A . J 4 HOH 12 1016 1016 HOH HOH A . J 4 HOH 13 1017 1017 HOH HOH A . J 4 HOH 14 1018 1018 HOH HOH A . J 4 HOH 15 1019 1019 HOH HOH A . J 4 HOH 16 1020 1020 HOH HOH A . J 4 HOH 17 1021 1021 HOH HOH A . J 4 HOH 18 1022 1022 HOH HOH A . J 4 HOH 19 1023 1023 HOH HOH A . J 4 HOH 20 1024 1024 HOH HOH A . J 4 HOH 21 1025 1025 HOH HOH A . J 4 HOH 22 1026 1026 HOH HOH A . J 4 HOH 23 1027 1027 HOH HOH A . J 4 HOH 24 1028 1028 HOH HOH A . J 4 HOH 25 1029 1029 HOH HOH A . J 4 HOH 26 1030 1030 HOH HOH A . J 4 HOH 27 1031 1031 HOH HOH A . J 4 HOH 28 1032 1032 HOH HOH A . J 4 HOH 29 1033 1033 HOH HOH A . J 4 HOH 30 1034 1034 HOH HOH A . J 4 HOH 31 1035 1035 HOH HOH A . J 4 HOH 32 1036 1036 HOH HOH A . J 4 HOH 33 1037 1037 HOH HOH A . J 4 HOH 34 1038 1038 HOH HOH A . J 4 HOH 35 1039 1039 HOH HOH A . J 4 HOH 36 1040 1040 HOH HOH A . J 4 HOH 37 1041 1041 HOH HOH A . J 4 HOH 38 1042 1042 HOH HOH A . J 4 HOH 39 1043 1043 HOH HOH A . J 4 HOH 40 1044 1044 HOH HOH A . J 4 HOH 41 1045 1045 HOH HOH A . J 4 HOH 42 1046 1046 HOH HOH A . J 4 HOH 43 1047 1047 HOH HOH A . J 4 HOH 44 1048 1048 HOH HOH A . J 4 HOH 45 1049 1049 HOH HOH A . J 4 HOH 46 1050 1050 HOH HOH A . J 4 HOH 47 1051 1051 HOH HOH A . J 4 HOH 48 1052 1052 HOH HOH A . J 4 HOH 49 1053 1053 HOH HOH A . J 4 HOH 50 1054 1054 HOH HOH A . J 4 HOH 51 1055 1055 HOH HOH A . J 4 HOH 52 1056 1056 HOH HOH A . J 4 HOH 53 1057 1057 HOH HOH A . J 4 HOH 54 1058 1058 HOH HOH A . J 4 HOH 55 1059 1059 HOH HOH A . J 4 HOH 56 1060 1060 HOH HOH A . J 4 HOH 57 1061 1061 HOH HOH A . J 4 HOH 58 1062 1062 HOH HOH A . J 4 HOH 59 1063 1063 HOH HOH A . J 4 HOH 60 1064 1064 HOH HOH A . J 4 HOH 61 1065 1065 HOH HOH A . J 4 HOH 62 1066 1066 HOH HOH A . J 4 HOH 63 1067 1067 HOH HOH A . J 4 HOH 64 1068 1068 HOH HOH A . J 4 HOH 65 1069 1069 HOH HOH A . J 4 HOH 66 1070 1070 HOH HOH A . J 4 HOH 67 1071 1071 HOH HOH A . J 4 HOH 68 1072 1072 HOH HOH A . J 4 HOH 69 1073 1073 HOH HOH A . J 4 HOH 70 1074 1074 HOH HOH A . J 4 HOH 71 1075 1075 HOH HOH A . J 4 HOH 72 1076 1076 HOH HOH A . J 4 HOH 73 1077 1077 HOH HOH A . J 4 HOH 74 1078 1078 HOH HOH A . J 4 HOH 75 1079 1079 HOH HOH A . J 4 HOH 76 1080 1080 HOH HOH A . J 4 HOH 77 1081 1081 HOH HOH A . J 4 HOH 78 1082 1082 HOH HOH A . J 4 HOH 79 1083 1083 HOH HOH A . J 4 HOH 80 1084 1084 HOH HOH A . J 4 HOH 81 1085 1085 HOH HOH A . J 4 HOH 82 1086 1086 HOH HOH A . J 4 HOH 83 1087 1087 HOH HOH A . J 4 HOH 84 1088 1088 HOH HOH A . J 4 HOH 85 1089 1089 HOH HOH A . J 4 HOH 86 1090 1090 HOH HOH A . J 4 HOH 87 1091 1091 HOH HOH A . J 4 HOH 88 1092 1092 HOH HOH A . J 4 HOH 89 1093 1093 HOH HOH A . J 4 HOH 90 1094 1094 HOH HOH A . J 4 HOH 91 1095 1095 HOH HOH A . J 4 HOH 92 1096 1096 HOH HOH A . J 4 HOH 93 1097 1097 HOH HOH A . J 4 HOH 94 1098 1098 HOH HOH A . J 4 HOH 95 1099 1099 HOH HOH A . J 4 HOH 96 1100 1100 HOH HOH A . J 4 HOH 97 1101 1101 HOH HOH A . J 4 HOH 98 1102 1102 HOH HOH A . J 4 HOH 99 1103 1103 HOH HOH A . J 4 HOH 100 1104 1104 HOH HOH A . K 4 HOH 1 1006 1006 HOH HOH B . K 4 HOH 2 1007 1007 HOH HOH B . K 4 HOH 3 1008 1008 HOH HOH B . K 4 HOH 4 1009 1009 HOH HOH B . K 4 HOH 5 1010 1010 HOH HOH B . K 4 HOH 6 1011 1011 HOH HOH B . K 4 HOH 7 1012 1012 HOH HOH B . K 4 HOH 8 1013 1013 HOH HOH B . K 4 HOH 9 1014 1014 HOH HOH B . K 4 HOH 10 1015 1015 HOH HOH B . K 4 HOH 11 1016 1016 HOH HOH B . K 4 HOH 12 1017 1017 HOH HOH B . K 4 HOH 13 1018 1018 HOH HOH B . K 4 HOH 14 1019 1019 HOH HOH B . K 4 HOH 15 1020 1020 HOH HOH B . K 4 HOH 16 1021 1021 HOH HOH B . K 4 HOH 17 1022 1022 HOH HOH B . K 4 HOH 18 1023 1023 HOH HOH B . K 4 HOH 19 1024 1024 HOH HOH B . K 4 HOH 20 1025 1025 HOH HOH B . K 4 HOH 21 1026 1026 HOH HOH B . K 4 HOH 22 1027 1027 HOH HOH B . K 4 HOH 23 1028 1028 HOH HOH B . K 4 HOH 24 1029 1029 HOH HOH B . K 4 HOH 25 1030 1030 HOH HOH B . K 4 HOH 26 1031 1031 HOH HOH B . K 4 HOH 27 1032 1032 HOH HOH B . K 4 HOH 28 1033 1033 HOH HOH B . K 4 HOH 29 1034 1034 HOH HOH B . K 4 HOH 30 1035 1035 HOH HOH B . K 4 HOH 31 1036 1036 HOH HOH B . K 4 HOH 32 1037 1037 HOH HOH B . K 4 HOH 33 1038 1038 HOH HOH B . K 4 HOH 34 1039 1039 HOH HOH B . K 4 HOH 35 1040 1040 HOH HOH B . K 4 HOH 36 1041 1041 HOH HOH B . K 4 HOH 37 1042 1042 HOH HOH B . K 4 HOH 38 1043 1043 HOH HOH B . K 4 HOH 39 1044 1044 HOH HOH B . K 4 HOH 40 1045 1045 HOH HOH B . K 4 HOH 41 1046 1046 HOH HOH B . K 4 HOH 42 1047 1047 HOH HOH B . K 4 HOH 43 1048 1048 HOH HOH B . K 4 HOH 44 1049 1049 HOH HOH B . K 4 HOH 45 1050 1050 HOH HOH B . K 4 HOH 46 1051 1051 HOH HOH B . K 4 HOH 47 1052 1052 HOH HOH B . K 4 HOH 48 1053 1053 HOH HOH B . K 4 HOH 49 1054 1054 HOH HOH B . K 4 HOH 50 1055 1055 HOH HOH B . K 4 HOH 51 1056 1056 HOH HOH B . K 4 HOH 52 1057 1057 HOH HOH B . K 4 HOH 53 1058 1058 HOH HOH B . K 4 HOH 54 1059 1059 HOH HOH B . K 4 HOH 55 1060 1060 HOH HOH B . K 4 HOH 56 1061 1061 HOH HOH B . K 4 HOH 57 1062 1062 HOH HOH B . K 4 HOH 58 1063 1063 HOH HOH B . K 4 HOH 59 1064 1064 HOH HOH B . K 4 HOH 60 1065 1065 HOH HOH B . K 4 HOH 61 1066 1066 HOH HOH B . K 4 HOH 62 1067 1067 HOH HOH B . K 4 HOH 63 1068 1068 HOH HOH B . K 4 HOH 64 1069 1069 HOH HOH B . K 4 HOH 65 1070 1070 HOH HOH B . K 4 HOH 66 1071 1071 HOH HOH B . K 4 HOH 67 1072 1072 HOH HOH B . K 4 HOH 68 1073 1073 HOH HOH B . K 4 HOH 69 1074 1074 HOH HOH B . K 4 HOH 70 1075 1075 HOH HOH B . K 4 HOH 71 1076 1076 HOH HOH B . K 4 HOH 72 1077 1077 HOH HOH B . K 4 HOH 73 1078 1078 HOH HOH B . K 4 HOH 74 1079 1079 HOH HOH B . K 4 HOH 75 1080 1080 HOH HOH B . K 4 HOH 76 1081 1081 HOH HOH B . K 4 HOH 77 1082 1082 HOH HOH B . K 4 HOH 78 1083 1083 HOH HOH B . K 4 HOH 79 1084 1084 HOH HOH B . K 4 HOH 80 1085 1085 HOH HOH B . K 4 HOH 81 1086 1086 HOH HOH B . K 4 HOH 82 1087 1087 HOH HOH B . K 4 HOH 83 1088 1088 HOH HOH B . K 4 HOH 84 1089 1089 HOH HOH B . K 4 HOH 85 1090 1090 HOH HOH B . K 4 HOH 86 1091 1091 HOH HOH B . K 4 HOH 87 1092 1092 HOH HOH B . K 4 HOH 88 1093 1093 HOH HOH B . K 4 HOH 89 1094 1094 HOH HOH B . K 4 HOH 90 1095 1095 HOH HOH B . K 4 HOH 91 1096 1096 HOH HOH B . K 4 HOH 92 1097 1097 HOH HOH B . K 4 HOH 93 1098 1098 HOH HOH B . K 4 HOH 94 1099 1099 HOH HOH B . K 4 HOH 95 1100 1100 HOH HOH B . K 4 HOH 96 1101 1101 HOH HOH B . K 4 HOH 97 1102 1102 HOH HOH B . K 4 HOH 98 1103 1103 HOH HOH B . K 4 HOH 99 1104 1104 HOH HOH B . K 4 HOH 100 1105 1105 HOH HOH B . K 4 HOH 101 1106 1106 HOH HOH B . K 4 HOH 102 1107 1107 HOH HOH B . K 4 HOH 103 1108 1108 HOH HOH B . K 4 HOH 104 1109 1109 HOH HOH B . K 4 HOH 105 1110 1110 HOH HOH B . K 4 HOH 106 1111 1111 HOH HOH B . K 4 HOH 107 1112 1112 HOH HOH B . K 4 HOH 108 1113 1113 HOH HOH B . K 4 HOH 109 1114 1114 HOH HOH B . K 4 HOH 110 1115 1115 HOH HOH B . K 4 HOH 111 1116 1116 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_900066 _pdbx_molecule_features.name "6'-sialyl-lactose" _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details oligosaccharide # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_900066 C 2 PRD_900066 D # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,G,H,J 2 1 B,D,I,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-06 2 'Structure model' 1 1 2008-03-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2021-11-10 6 'Structure model' 2 2 2023-10-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Advisory 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Structure summary' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_molecule_features 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly_gen 15 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 16 4 'Structure model' struct_asym 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_site 19 4 'Structure model' struct_site_gen 20 5 'Structure model' chem_comp 21 5 'Structure model' database_2 22 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 23 5 'Structure model' struct_ref_seq_dif 24 6 'Structure model' chem_comp_atom 25 6 'Structure model' chem_comp_bond 26 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.occupancy' 14 4 'Structure model' '_atom_site.type_symbol' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.type' 17 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 32 5 'Structure model' '_chem_comp.pdbx_synonyms' 33 5 'Structure model' '_database_2.pdbx_DOI' 34 5 'Structure model' '_database_2.pdbx_database_accession' 35 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 224 ? ? -165.69 91.16 2 1 ASP B 177 ? ? -79.65 -169.25 3 1 ASN B 187 ? ? -145.22 13.16 4 1 ASP B 224 ? ? -153.07 74.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 0 C BGC 1 ? C2 ? C BGC ? C2 2 1 N 0 C BGC 1 ? C3 ? C BGC ? C3 3 1 N 0 C BGC 1 ? C4 ? C BGC ? C4 4 1 N 0 C BGC 1 ? C5 ? C BGC ? C5 5 1 N 0 C BGC 1 ? C6 ? C BGC ? C6 6 1 N 0 C BGC 1 ? C1 ? C BGC ? C1 7 1 N 0 C BGC 1 ? O1 ? C BGC ? O1 8 1 N 0 C BGC 1 ? O2 ? C BGC ? O2 9 1 N 0 C BGC 1 ? O3 ? C BGC ? O3 10 1 N 0 C BGC 1 ? O5 ? C BGC ? O5 11 1 N 0 C BGC 1 ? O6 ? C BGC ? O6 12 1 N 0 D BGC 1 ? C2 ? D BGC ? C2 13 1 N 0 D BGC 1 ? C3 ? D BGC ? C3 14 1 N 0 D BGC 1 ? C4 ? D BGC ? C4 15 1 N 0 D BGC 1 ? C5 ? D BGC ? C5 16 1 N 0 D BGC 1 ? C6 ? D BGC ? C6 17 1 N 0 D BGC 1 ? C1 ? D BGC ? C1 18 1 N 0 D BGC 1 ? O1 ? D BGC ? O1 19 1 N 0 D BGC 1 ? O2 ? D BGC ? O2 20 1 N 0 D BGC 1 ? O3 ? D BGC ? O3 21 1 N 0 D BGC 1 ? O5 ? D BGC ? O5 22 1 N 0 D BGC 1 ? O6 ? D BGC ? O6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BGC C2 C N R 74 BGC C3 C N S 75 BGC C4 C N S 76 BGC C5 C N R 77 BGC C6 C N N 78 BGC C1 C N R 79 BGC O1 O N N 80 BGC O2 O N N 81 BGC O3 O N N 82 BGC O4 O N N 83 BGC O5 O N N 84 BGC O6 O N N 85 BGC H2 H N N 86 BGC H3 H N N 87 BGC H4 H N N 88 BGC H5 H N N 89 BGC H61 H N N 90 BGC H62 H N N 91 BGC H1 H N N 92 BGC HO1 H N N 93 BGC HO2 H N N 94 BGC HO3 H N N 95 BGC HO4 H N N 96 BGC HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GAL C1 C N R 112 GAL C2 C N R 113 GAL C3 C N S 114 GAL C4 C N R 115 GAL C5 C N R 116 GAL C6 C N N 117 GAL O1 O N N 118 GAL O2 O N N 119 GAL O3 O N N 120 GAL O4 O N N 121 GAL O5 O N N 122 GAL O6 O N N 123 GAL H1 H N N 124 GAL H2 H N N 125 GAL H3 H N N 126 GAL H4 H N N 127 GAL H5 H N N 128 GAL H61 H N N 129 GAL H62 H N N 130 GAL HO1 H N N 131 GAL HO2 H N N 132 GAL HO3 H N N 133 GAL HO4 H N N 134 GAL HO6 H N N 135 GLN N N N N 136 GLN CA C N S 137 GLN C C N N 138 GLN O O N N 139 GLN CB C N N 140 GLN CG C N N 141 GLN CD C N N 142 GLN OE1 O N N 143 GLN NE2 N N N 144 GLN OXT O N N 145 GLN H H N N 146 GLN H2 H N N 147 GLN HA H N N 148 GLN HB2 H N N 149 GLN HB3 H N N 150 GLN HG2 H N N 151 GLN HG3 H N N 152 GLN HE21 H N N 153 GLN HE22 H N N 154 GLN HXT H N N 155 GLU N N N N 156 GLU CA C N S 157 GLU C C N N 158 GLU O O N N 159 GLU CB C N N 160 GLU CG C N N 161 GLU CD C N N 162 GLU OE1 O N N 163 GLU OE2 O N N 164 GLU OXT O N N 165 GLU H H N N 166 GLU H2 H N N 167 GLU HA H N N 168 GLU HB2 H N N 169 GLU HB3 H N N 170 GLU HG2 H N N 171 GLU HG3 H N N 172 GLU HE2 H N N 173 GLU HXT H N N 174 GLY N N N N 175 GLY CA C N N 176 GLY C C N N 177 GLY O O N N 178 GLY OXT O N N 179 GLY H H N N 180 GLY H2 H N N 181 GLY HA2 H N N 182 GLY HA3 H N N 183 GLY HXT H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 PHE N N N N 278 PHE CA C N S 279 PHE C C N N 280 PHE O O N N 281 PHE CB C N N 282 PHE CG C Y N 283 PHE CD1 C Y N 284 PHE CD2 C Y N 285 PHE CE1 C Y N 286 PHE CE2 C Y N 287 PHE CZ C Y N 288 PHE OXT O N N 289 PHE H H N N 290 PHE H2 H N N 291 PHE HA H N N 292 PHE HB2 H N N 293 PHE HB3 H N N 294 PHE HD1 H N N 295 PHE HD2 H N N 296 PHE HE1 H N N 297 PHE HE2 H N N 298 PHE HZ H N N 299 PHE HXT H N N 300 PRO N N N N 301 PRO CA C N S 302 PRO C C N N 303 PRO O O N N 304 PRO CB C N N 305 PRO CG C N N 306 PRO CD C N N 307 PRO OXT O N N 308 PRO H H N N 309 PRO HA H N N 310 PRO HB2 H N N 311 PRO HB3 H N N 312 PRO HG2 H N N 313 PRO HG3 H N N 314 PRO HD2 H N N 315 PRO HD3 H N N 316 PRO HXT H N N 317 SER N N N N 318 SER CA C N S 319 SER C C N N 320 SER O O N N 321 SER CB C N N 322 SER OG O N N 323 SER OXT O N N 324 SER H H N N 325 SER H2 H N N 326 SER HA H N N 327 SER HB2 H N N 328 SER HB3 H N N 329 SER HG H N N 330 SER HXT H N N 331 SIA C1 C N N 332 SIA C2 C N R 333 SIA C3 C N N 334 SIA C4 C N S 335 SIA C5 C N R 336 SIA C6 C N R 337 SIA C7 C N R 338 SIA C8 C N R 339 SIA C9 C N N 340 SIA C10 C N N 341 SIA C11 C N N 342 SIA N5 N N N 343 SIA O1A O N N 344 SIA O1B O N N 345 SIA O2 O N N 346 SIA O4 O N N 347 SIA O6 O N N 348 SIA O7 O N N 349 SIA O8 O N N 350 SIA O9 O N N 351 SIA O10 O N N 352 SIA H32 H N N 353 SIA H31 H N N 354 SIA H4 H N N 355 SIA H5 H N N 356 SIA H6 H N N 357 SIA H7 H N N 358 SIA H8 H N N 359 SIA H92 H N N 360 SIA H91 H N N 361 SIA H111 H N N 362 SIA H113 H N N 363 SIA H112 H N N 364 SIA HN5 H N N 365 SIA HO1B H N N 366 SIA HO2 H N N 367 SIA HO4 H N N 368 SIA HO7 H N N 369 SIA HO8 H N N 370 SIA HO9 H N N 371 SO4 S S N N 372 SO4 O1 O N N 373 SO4 O2 O N N 374 SO4 O3 O N N 375 SO4 O4 O N N 376 THR N N N N 377 THR CA C N S 378 THR C C N N 379 THR O O N N 380 THR CB C N R 381 THR OG1 O N N 382 THR CG2 C N N 383 THR OXT O N N 384 THR H H N N 385 THR H2 H N N 386 THR HA H N N 387 THR HB H N N 388 THR HG1 H N N 389 THR HG21 H N N 390 THR HG22 H N N 391 THR HG23 H N N 392 THR HXT H N N 393 TRP N N N N 394 TRP CA C N S 395 TRP C C N N 396 TRP O O N N 397 TRP CB C N N 398 TRP CG C Y N 399 TRP CD1 C Y N 400 TRP CD2 C Y N 401 TRP NE1 N Y N 402 TRP CE2 C Y N 403 TRP CE3 C Y N 404 TRP CZ2 C Y N 405 TRP CZ3 C Y N 406 TRP CH2 C Y N 407 TRP OXT O N N 408 TRP H H N N 409 TRP H2 H N N 410 TRP HA H N N 411 TRP HB2 H N N 412 TRP HB3 H N N 413 TRP HD1 H N N 414 TRP HE1 H N N 415 TRP HE3 H N N 416 TRP HZ2 H N N 417 TRP HZ3 H N N 418 TRP HH2 H N N 419 TRP HXT H N N 420 TYR N N N N 421 TYR CA C N S 422 TYR C C N N 423 TYR O O N N 424 TYR CB C N N 425 TYR CG C Y N 426 TYR CD1 C Y N 427 TYR CD2 C Y N 428 TYR CE1 C Y N 429 TYR CE2 C Y N 430 TYR CZ C Y N 431 TYR OH O N N 432 TYR OXT O N N 433 TYR H H N N 434 TYR H2 H N N 435 TYR HA H N N 436 TYR HB2 H N N 437 TYR HB3 H N N 438 TYR HD1 H N N 439 TYR HD2 H N N 440 TYR HE1 H N N 441 TYR HE2 H N N 442 TYR HH H N N 443 TYR HXT H N N 444 VAL N N N N 445 VAL CA C N S 446 VAL C C N N 447 VAL O O N N 448 VAL CB C N N 449 VAL CG1 C N N 450 VAL CG2 C N N 451 VAL OXT O N N 452 VAL H H N N 453 VAL H2 H N N 454 VAL HA H N N 455 VAL HB H N N 456 VAL HG11 H N N 457 VAL HG12 H N N 458 VAL HG13 H N N 459 VAL HG21 H N N 460 VAL HG22 H N N 461 VAL HG23 H N N 462 VAL HXT H N N 463 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BGC C2 C3 sing N N 70 BGC C2 C1 sing N N 71 BGC C2 O2 sing N N 72 BGC C2 H2 sing N N 73 BGC C3 C4 sing N N 74 BGC C3 O3 sing N N 75 BGC C3 H3 sing N N 76 BGC C4 C5 sing N N 77 BGC C4 O4 sing N N 78 BGC C4 H4 sing N N 79 BGC C5 C6 sing N N 80 BGC C5 O5 sing N N 81 BGC C5 H5 sing N N 82 BGC C6 O6 sing N N 83 BGC C6 H61 sing N N 84 BGC C6 H62 sing N N 85 BGC C1 O1 sing N N 86 BGC C1 O5 sing N N 87 BGC C1 H1 sing N N 88 BGC O1 HO1 sing N N 89 BGC O2 HO2 sing N N 90 BGC O3 HO3 sing N N 91 BGC O4 HO4 sing N N 92 BGC O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GAL C1 C2 sing N N 107 GAL C1 O1 sing N N 108 GAL C1 O5 sing N N 109 GAL C1 H1 sing N N 110 GAL C2 C3 sing N N 111 GAL C2 O2 sing N N 112 GAL C2 H2 sing N N 113 GAL C3 C4 sing N N 114 GAL C3 O3 sing N N 115 GAL C3 H3 sing N N 116 GAL C4 C5 sing N N 117 GAL C4 O4 sing N N 118 GAL C4 H4 sing N N 119 GAL C5 C6 sing N N 120 GAL C5 O5 sing N N 121 GAL C5 H5 sing N N 122 GAL C6 O6 sing N N 123 GAL C6 H61 sing N N 124 GAL C6 H62 sing N N 125 GAL O1 HO1 sing N N 126 GAL O2 HO2 sing N N 127 GAL O3 HO3 sing N N 128 GAL O4 HO4 sing N N 129 GAL O6 HO6 sing N N 130 GLN N CA sing N N 131 GLN N H sing N N 132 GLN N H2 sing N N 133 GLN CA C sing N N 134 GLN CA CB sing N N 135 GLN CA HA sing N N 136 GLN C O doub N N 137 GLN C OXT sing N N 138 GLN CB CG sing N N 139 GLN CB HB2 sing N N 140 GLN CB HB3 sing N N 141 GLN CG CD sing N N 142 GLN CG HG2 sing N N 143 GLN CG HG3 sing N N 144 GLN CD OE1 doub N N 145 GLN CD NE2 sing N N 146 GLN NE2 HE21 sing N N 147 GLN NE2 HE22 sing N N 148 GLN OXT HXT sing N N 149 GLU N CA sing N N 150 GLU N H sing N N 151 GLU N H2 sing N N 152 GLU CA C sing N N 153 GLU CA CB sing N N 154 GLU CA HA sing N N 155 GLU C O doub N N 156 GLU C OXT sing N N 157 GLU CB CG sing N N 158 GLU CB HB2 sing N N 159 GLU CB HB3 sing N N 160 GLU CG CD sing N N 161 GLU CG HG2 sing N N 162 GLU CG HG3 sing N N 163 GLU CD OE1 doub N N 164 GLU CD OE2 sing N N 165 GLU OE2 HE2 sing N N 166 GLU OXT HXT sing N N 167 GLY N CA sing N N 168 GLY N H sing N N 169 GLY N H2 sing N N 170 GLY CA C sing N N 171 GLY CA HA2 sing N N 172 GLY CA HA3 sing N N 173 GLY C O doub N N 174 GLY C OXT sing N N 175 GLY OXT HXT sing N N 176 HIS N CA sing N N 177 HIS N H sing N N 178 HIS N H2 sing N N 179 HIS CA C sing N N 180 HIS CA CB sing N N 181 HIS CA HA sing N N 182 HIS C O doub N N 183 HIS C OXT sing N N 184 HIS CB CG sing N N 185 HIS CB HB2 sing N N 186 HIS CB HB3 sing N N 187 HIS CG ND1 sing Y N 188 HIS CG CD2 doub Y N 189 HIS ND1 CE1 doub Y N 190 HIS ND1 HD1 sing N N 191 HIS CD2 NE2 sing Y N 192 HIS CD2 HD2 sing N N 193 HIS CE1 NE2 sing Y N 194 HIS CE1 HE1 sing N N 195 HIS NE2 HE2 sing N N 196 HIS OXT HXT sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 ILE N CA sing N N 200 ILE N H sing N N 201 ILE N H2 sing N N 202 ILE CA C sing N N 203 ILE CA CB sing N N 204 ILE CA HA sing N N 205 ILE C O doub N N 206 ILE C OXT sing N N 207 ILE CB CG1 sing N N 208 ILE CB CG2 sing N N 209 ILE CB HB sing N N 210 ILE CG1 CD1 sing N N 211 ILE CG1 HG12 sing N N 212 ILE CG1 HG13 sing N N 213 ILE CG2 HG21 sing N N 214 ILE CG2 HG22 sing N N 215 ILE CG2 HG23 sing N N 216 ILE CD1 HD11 sing N N 217 ILE CD1 HD12 sing N N 218 ILE CD1 HD13 sing N N 219 ILE OXT HXT sing N N 220 LEU N CA sing N N 221 LEU N H sing N N 222 LEU N H2 sing N N 223 LEU CA C sing N N 224 LEU CA CB sing N N 225 LEU CA HA sing N N 226 LEU C O doub N N 227 LEU C OXT sing N N 228 LEU CB CG sing N N 229 LEU CB HB2 sing N N 230 LEU CB HB3 sing N N 231 LEU CG CD1 sing N N 232 LEU CG CD2 sing N N 233 LEU CG HG sing N N 234 LEU CD1 HD11 sing N N 235 LEU CD1 HD12 sing N N 236 LEU CD1 HD13 sing N N 237 LEU CD2 HD21 sing N N 238 LEU CD2 HD22 sing N N 239 LEU CD2 HD23 sing N N 240 LEU OXT HXT sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 PHE N CA sing N N 266 PHE N H sing N N 267 PHE N H2 sing N N 268 PHE CA C sing N N 269 PHE CA CB sing N N 270 PHE CA HA sing N N 271 PHE C O doub N N 272 PHE C OXT sing N N 273 PHE CB CG sing N N 274 PHE CB HB2 sing N N 275 PHE CB HB3 sing N N 276 PHE CG CD1 doub Y N 277 PHE CG CD2 sing Y N 278 PHE CD1 CE1 sing Y N 279 PHE CD1 HD1 sing N N 280 PHE CD2 CE2 doub Y N 281 PHE CD2 HD2 sing N N 282 PHE CE1 CZ doub Y N 283 PHE CE1 HE1 sing N N 284 PHE CE2 CZ sing Y N 285 PHE CE2 HE2 sing N N 286 PHE CZ HZ sing N N 287 PHE OXT HXT sing N N 288 PRO N CA sing N N 289 PRO N CD sing N N 290 PRO N H sing N N 291 PRO CA C sing N N 292 PRO CA CB sing N N 293 PRO CA HA sing N N 294 PRO C O doub N N 295 PRO C OXT sing N N 296 PRO CB CG sing N N 297 PRO CB HB2 sing N N 298 PRO CB HB3 sing N N 299 PRO CG CD sing N N 300 PRO CG HG2 sing N N 301 PRO CG HG3 sing N N 302 PRO CD HD2 sing N N 303 PRO CD HD3 sing N N 304 PRO OXT HXT sing N N 305 SER N CA sing N N 306 SER N H sing N N 307 SER N H2 sing N N 308 SER CA C sing N N 309 SER CA CB sing N N 310 SER CA HA sing N N 311 SER C O doub N N 312 SER C OXT sing N N 313 SER CB OG sing N N 314 SER CB HB2 sing N N 315 SER CB HB3 sing N N 316 SER OG HG sing N N 317 SER OXT HXT sing N N 318 SIA C1 C2 sing N N 319 SIA C1 O1A doub N N 320 SIA C1 O1B sing N N 321 SIA C2 C3 sing N N 322 SIA C2 O2 sing N N 323 SIA C2 O6 sing N N 324 SIA C3 C4 sing N N 325 SIA C3 H32 sing N N 326 SIA C3 H31 sing N N 327 SIA C4 C5 sing N N 328 SIA C4 O4 sing N N 329 SIA C4 H4 sing N N 330 SIA C5 C6 sing N N 331 SIA C5 N5 sing N N 332 SIA C5 H5 sing N N 333 SIA C6 C7 sing N N 334 SIA C6 O6 sing N N 335 SIA C6 H6 sing N N 336 SIA C7 C8 sing N N 337 SIA C7 O7 sing N N 338 SIA C7 H7 sing N N 339 SIA C8 C9 sing N N 340 SIA C8 O8 sing N N 341 SIA C8 H8 sing N N 342 SIA C9 O9 sing N N 343 SIA C9 H92 sing N N 344 SIA C9 H91 sing N N 345 SIA C10 C11 sing N N 346 SIA C10 N5 sing N N 347 SIA C10 O10 doub N N 348 SIA C11 H111 sing N N 349 SIA C11 H113 sing N N 350 SIA C11 H112 sing N N 351 SIA N5 HN5 sing N N 352 SIA O1B HO1B sing N N 353 SIA O2 HO2 sing N N 354 SIA O4 HO4 sing N N 355 SIA O7 HO7 sing N N 356 SIA O8 HO8 sing N N 357 SIA O9 HO9 sing N N 358 SO4 S O1 doub N N 359 SO4 S O2 doub N N 360 SO4 S O3 sing N N 361 SO4 S O4 sing N N 362 THR N CA sing N N 363 THR N H sing N N 364 THR N H2 sing N N 365 THR CA C sing N N 366 THR CA CB sing N N 367 THR CA HA sing N N 368 THR C O doub N N 369 THR C OXT sing N N 370 THR CB OG1 sing N N 371 THR CB CG2 sing N N 372 THR CB HB sing N N 373 THR OG1 HG1 sing N N 374 THR CG2 HG21 sing N N 375 THR CG2 HG22 sing N N 376 THR CG2 HG23 sing N N 377 THR OXT HXT sing N N 378 TRP N CA sing N N 379 TRP N H sing N N 380 TRP N H2 sing N N 381 TRP CA C sing N N 382 TRP CA CB sing N N 383 TRP CA HA sing N N 384 TRP C O doub N N 385 TRP C OXT sing N N 386 TRP CB CG sing N N 387 TRP CB HB2 sing N N 388 TRP CB HB3 sing N N 389 TRP CG CD1 doub Y N 390 TRP CG CD2 sing Y N 391 TRP CD1 NE1 sing Y N 392 TRP CD1 HD1 sing N N 393 TRP CD2 CE2 doub Y N 394 TRP CD2 CE3 sing Y N 395 TRP NE1 CE2 sing Y N 396 TRP NE1 HE1 sing N N 397 TRP CE2 CZ2 sing Y N 398 TRP CE3 CZ3 doub Y N 399 TRP CE3 HE3 sing N N 400 TRP CZ2 CH2 doub Y N 401 TRP CZ2 HZ2 sing N N 402 TRP CZ3 CH2 sing Y N 403 TRP CZ3 HZ3 sing N N 404 TRP CH2 HH2 sing N N 405 TRP OXT HXT sing N N 406 TYR N CA sing N N 407 TYR N H sing N N 408 TYR N H2 sing N N 409 TYR CA C sing N N 410 TYR CA CB sing N N 411 TYR CA HA sing N N 412 TYR C O doub N N 413 TYR C OXT sing N N 414 TYR CB CG sing N N 415 TYR CB HB2 sing N N 416 TYR CB HB3 sing N N 417 TYR CG CD1 doub Y N 418 TYR CG CD2 sing Y N 419 TYR CD1 CE1 sing Y N 420 TYR CD1 HD1 sing N N 421 TYR CD2 CE2 doub Y N 422 TYR CD2 HD2 sing N N 423 TYR CE1 CZ doub Y N 424 TYR CE1 HE1 sing N N 425 TYR CE2 CZ sing Y N 426 TYR CE2 HE2 sing N N 427 TYR CZ OH sing N N 428 TYR OH HH sing N N 429 TYR OXT HXT sing N N 430 VAL N CA sing N N 431 VAL N H sing N N 432 VAL N H2 sing N N 433 VAL CA C sing N N 434 VAL CA CB sing N N 435 VAL CA HA sing N N 436 VAL C O doub N N 437 VAL C OXT sing N N 438 VAL CB CG1 sing N N 439 VAL CB CG2 sing N N 440 VAL CB HB sing N N 441 VAL CG1 HG11 sing N N 442 VAL CG1 HG12 sing N N 443 VAL CG1 HG13 sing N N 444 VAL CG2 HG21 sing N N 445 VAL CG2 HG22 sing N N 446 VAL CG2 HG23 sing N N 447 VAL OXT HXT sing N N 448 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 BGC 1 C BGC 1 A BGC 282 n C 2 GAL 2 C GAL 2 A GAL 281 n C 2 SIA 3 C SIA 3 A SIA 280 n D 2 BGC 1 D BGC 1 B BGC 272 n D 2 GAL 2 D GAL 2 B GAL 271 n D 2 SIA 3 D SIA 3 B SIA 270 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DNeup5Aca2-6DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b6-c2' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(6+2)][a-D-Neup5Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ? 2 2 3 SIA C2 O2 2 GAL O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 GAL 2 n 2 SIA 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2D12 _pdbx_initial_refinement_model.details 'PDB ENTRY 2D12' #