HEADER HYDROLASE 28-JUN-06 2DSC TITLE CRYSTAL STRUCTURE OF HUMAN ADP-RIBOSE PYROPHOSPHATASE NUDT5 IN COMPLEX TITLE 2 WITH MAGNESIUM AND ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-SUGAR PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-210; COMPND 5 SYNONYM: NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 5, NUDIX MOTIF COMPND 6 5, YSA1H; COMPND 7 EC: 3.6.1.13, 3.6.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1 KEYWDS NUDIX DOMAIN, ADPR, ADP-RIBOSE PYROPHOSPHATASE, NUDT5, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHA,C.ZHONG,J.DING REVDAT 4 25-OCT-23 2DSC 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2DSC 1 VERSN REVDAT 2 12-DEC-06 2DSC 1 JRNL REVDAT 1 14-NOV-06 2DSC 0 JRNL AUTH M.ZHA,C.ZHONG,Y.PENG,H.HU,J.DING JRNL TITL CRYSTAL STRUCTURES OF HUMAN NUDT5 REVEAL INSIGHTS INTO THE JRNL TITL 2 STRUCTURAL BASIS OF THE SUBSTRATE SPECIFICITY JRNL REF J.MOL.BIOL. V. 364 1021 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17052728 JRNL DOI 10.1016/J.JMB.2006.09.078 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1799894.480 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 24483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1226 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2841 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3032 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.74000 REMARK 3 B22 (A**2) : 6.88000 REMARK 3 B33 (A**2) : -3.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 53.56 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ADPR.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ADPR.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DSC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000025785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24484 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2DSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M SODIUM ACETATE, REMARK 280 0.1M TRIS HYDROCHLORIDE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.23300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.31150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.23300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.31150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLN A 11 REMARK 465 ASN A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 209 REMARK 465 LYS A 210 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 PRO B 6 REMARK 465 THR B 7 REMARK 465 GLU B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 GLN B 11 REMARK 465 ASN B 12 REMARK 465 GLY B 13 REMARK 465 ALA B 209 REMARK 465 LYS B 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 133 77.89 -164.26 REMARK 500 LYS A 161 73.86 -150.17 REMARK 500 ASP A 177 31.33 -143.56 REMARK 500 HIS A 190 8.05 57.77 REMARK 500 GLU B 56 47.71 -87.91 REMARK 500 GLN B 57 -136.29 -90.88 REMARK 500 ASP B 133 78.06 -162.22 REMARK 500 ASP B 177 28.08 -144.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 96 O REMARK 620 2 GLU A 116 OE2 69.5 REMARK 620 3 HOH A 409 O 92.3 81.0 REMARK 620 4 HOH A 433 O 177.8 112.1 89.5 REMARK 620 5 APR B 401 O2B 92.7 162.2 101.5 85.7 REMARK 620 6 APR B 401 O1A 95.4 103.6 172.0 82.7 76.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 APR A 402 O2B REMARK 620 2 APR A 402 O1A 70.8 REMARK 620 3 ALA B 96 O 92.1 93.0 REMARK 620 4 GLU B 116 OE1 174.1 109.2 82.1 REMARK 620 5 HOH B 418 O 103.5 169.7 95.8 77.4 REMARK 620 6 HOH B 448 O 81.9 82.6 173.5 103.9 88.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DSB RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGANDS REMARK 900 RELATED ID: 2DSD RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH MAGNESIUM AND AMP DBREF 2DSC A 1 210 UNP Q9UKK9 NUDT5_HUMAN 1 210 DBREF 2DSC B 1 210 UNP Q9UKK9 NUDT5_HUMAN 1 210 SEQADV 2DSC GLY A -1 UNP Q9UKK9 CLONING ARTIFACT SEQADV 2DSC SER A 0 UNP Q9UKK9 CLONING ARTIFACT SEQADV 2DSC GLY B -1 UNP Q9UKK9 CLONING ARTIFACT SEQADV 2DSC SER B 0 UNP Q9UKK9 CLONING ARTIFACT SEQRES 1 A 212 GLY SER MET GLU SER GLN GLU PRO THR GLU SER SER GLN SEQRES 2 A 212 ASN GLY LYS GLN TYR ILE ILE SER GLU GLU LEU ILE SER SEQRES 3 A 212 GLU GLY LYS TRP VAL LYS LEU GLU LYS THR THR TYR MET SEQRES 4 A 212 ASP PRO THR GLY LYS THR ARG THR TRP GLU SER VAL LYS SEQRES 5 A 212 ARG THR THR ARG LYS GLU GLN THR ALA ASP GLY VAL ALA SEQRES 6 A 212 VAL ILE PRO VAL LEU GLN ARG THR LEU HIS TYR GLU CYS SEQRES 7 A 212 ILE VAL LEU VAL LYS GLN PHE ARG PRO PRO MET GLY GLY SEQRES 8 A 212 TYR CYS ILE GLU PHE PRO ALA GLY LEU ILE ASP ASP GLY SEQRES 9 A 212 GLU THR PRO GLU ALA ALA ALA LEU ARG GLU LEU GLU GLU SEQRES 10 A 212 GLU THR GLY TYR LYS GLY ASP ILE ALA GLU CYS SER PRO SEQRES 11 A 212 ALA VAL CYS MET ASP PRO GLY LEU SER ASN CYS THR ILE SEQRES 12 A 212 HIS ILE VAL THR VAL THR ILE ASN GLY ASP ASP ALA GLU SEQRES 13 A 212 ASN ALA ARG PRO LYS PRO LYS PRO GLY ASP GLY GLU PHE SEQRES 14 A 212 VAL GLU VAL ILE SER LEU PRO LYS ASN ASP LEU LEU GLN SEQRES 15 A 212 ARG LEU ASP ALA LEU VAL ALA GLU GLU HIS LEU THR VAL SEQRES 16 A 212 ASP ALA ARG VAL TYR SER TYR ALA LEU ALA LEU LYS HIS SEQRES 17 A 212 ALA ASN ALA LYS SEQRES 1 B 212 GLY SER MET GLU SER GLN GLU PRO THR GLU SER SER GLN SEQRES 2 B 212 ASN GLY LYS GLN TYR ILE ILE SER GLU GLU LEU ILE SER SEQRES 3 B 212 GLU GLY LYS TRP VAL LYS LEU GLU LYS THR THR TYR MET SEQRES 4 B 212 ASP PRO THR GLY LYS THR ARG THR TRP GLU SER VAL LYS SEQRES 5 B 212 ARG THR THR ARG LYS GLU GLN THR ALA ASP GLY VAL ALA SEQRES 6 B 212 VAL ILE PRO VAL LEU GLN ARG THR LEU HIS TYR GLU CYS SEQRES 7 B 212 ILE VAL LEU VAL LYS GLN PHE ARG PRO PRO MET GLY GLY SEQRES 8 B 212 TYR CYS ILE GLU PHE PRO ALA GLY LEU ILE ASP ASP GLY SEQRES 9 B 212 GLU THR PRO GLU ALA ALA ALA LEU ARG GLU LEU GLU GLU SEQRES 10 B 212 GLU THR GLY TYR LYS GLY ASP ILE ALA GLU CYS SER PRO SEQRES 11 B 212 ALA VAL CYS MET ASP PRO GLY LEU SER ASN CYS THR ILE SEQRES 12 B 212 HIS ILE VAL THR VAL THR ILE ASN GLY ASP ASP ALA GLU SEQRES 13 B 212 ASN ALA ARG PRO LYS PRO LYS PRO GLY ASP GLY GLU PHE SEQRES 14 B 212 VAL GLU VAL ILE SER LEU PRO LYS ASN ASP LEU LEU GLN SEQRES 15 B 212 ARG LEU ASP ALA LEU VAL ALA GLU GLU HIS LEU THR VAL SEQRES 16 B 212 ASP ALA ARG VAL TYR SER TYR ALA LEU ALA LEU LYS HIS SEQRES 17 B 212 ALA ASN ALA LYS HET MG A 302 1 HET APR A 402 36 HET MG B 301 1 HET APR B 401 36 HETNAM MG MAGNESIUM ION HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 MG 2(MG 2+) FORMUL 4 APR 2(C15 H23 N5 O14 P2) FORMUL 7 HOH *291(H2 O) HELIX 1 1 PRO A 85 GLY A 88 5 4 HELIX 2 2 THR A 104 GLY A 118 1 15 HELIX 3 3 ASP A 152 ALA A 156 5 5 HELIX 4 4 ASP A 177 HIS A 190 1 14 HELIX 5 5 ASP A 194 ASN A 208 1 15 HELIX 6 6 THR B 104 GLY B 118 1 15 HELIX 7 7 ASP B 152 ALA B 156 5 5 HELIX 8 8 ASP B 177 GLU B 189 1 13 HELIX 9 9 ASP B 194 ASN B 208 1 15 SHEET 1 A 3 TYR A 16 GLU A 25 0 SHEET 2 A 3 VAL A 29 MET A 37 -1 O THR A 35 N ILE A 18 SHEET 3 A 3 THR A 43 ARG A 51 -1 O TRP A 46 N THR A 34 SHEET 1 B 5 ALA A 96 LEU A 98 0 SHEET 2 B 5 GLY A 61 GLN A 69 -1 N VAL A 62 O GLY A 97 SHEET 3 B 5 CYS A 76 ARG A 84 -1 O CYS A 76 N LEU A 68 SHEET 4 B 5 GLY A 89 GLU A 93 -1 O GLY A 89 N ARG A 84 SHEET 5 B 5 THR A 192 VAL A 193 1 O THR A 192 N ILE A 92 SHEET 1 C 5 ASP A 122 CYS A 126 0 SHEET 2 C 5 THR A 140 ASN A 149 -1 O THR A 145 N ALA A 124 SHEET 3 C 5 GLY A 61 GLN A 69 1 N VAL A 67 O VAL A 146 SHEET 4 C 5 CYS A 76 ARG A 84 -1 O CYS A 76 N LEU A 68 SHEET 5 C 5 GLU A 169 PRO A 174 -1 O ILE A 171 N LEU A 79 SHEET 1 D 3 VAL A 130 CYS A 131 0 SHEET 2 D 3 THR A 140 ASN A 149 -1 O ILE A 141 N VAL A 130 SHEET 3 D 3 ASP A 122 CYS A 126 -1 N ALA A 124 O THR A 145 SHEET 1 E 3 TYR B 16 GLU B 25 0 SHEET 2 E 3 VAL B 29 MET B 37 -1 O LEU B 31 N SER B 24 SHEET 3 E 3 THR B 43 ARG B 51 -1 O TRP B 46 N THR B 34 SHEET 1 F 5 ALA B 96 LEU B 98 0 SHEET 2 F 5 GLY B 61 GLN B 69 -1 N VAL B 62 O GLY B 97 SHEET 3 F 5 CYS B 76 PHE B 83 -1 O CYS B 76 N LEU B 68 SHEET 4 F 5 TYR B 90 GLU B 93 -1 O GLU B 93 N VAL B 80 SHEET 5 F 5 THR B 192 VAL B 193 1 O THR B 192 N ILE B 92 SHEET 1 G 5 ASP B 122 CYS B 126 0 SHEET 2 G 5 THR B 140 ASN B 149 -1 O THR B 145 N ALA B 124 SHEET 3 G 5 GLY B 61 GLN B 69 1 N GLN B 69 O ILE B 148 SHEET 4 G 5 CYS B 76 PHE B 83 -1 O CYS B 76 N LEU B 68 SHEET 5 G 5 GLU B 169 PRO B 174 -1 O LEU B 173 N ILE B 77 SHEET 1 H 3 VAL B 130 CYS B 131 0 SHEET 2 H 3 THR B 140 ASN B 149 -1 O ILE B 141 N VAL B 130 SHEET 3 H 3 ASP B 122 CYS B 126 -1 N ALA B 124 O THR B 145 LINK O ALA A 96 MG MG A 302 1555 1555 2.32 LINK OE2 GLU A 116 MG MG A 302 1555 1555 2.52 LINK MG MG A 302 O HOH A 409 1555 1555 2.40 LINK MG MG A 302 O HOH A 433 1555 1555 2.55 LINK MG MG A 302 O2B APR B 401 1555 1555 2.51 LINK MG MG A 302 O1A APR B 401 1555 1555 2.42 LINK O2B APR A 402 MG MG B 301 1555 1555 2.55 LINK O1A APR A 402 MG MG B 301 1555 1555 2.50 LINK O ALA B 96 MG MG B 301 1555 1555 2.60 LINK OE1 GLU B 116 MG MG B 301 1555 1555 2.50 LINK MG MG B 301 O HOH B 418 1555 1555 2.37 LINK MG MG B 301 O HOH B 448 1555 1555 2.68 SITE 1 AC1 6 APR A 402 ALA B 96 GLU B 112 GLU B 116 SITE 2 AC1 6 HOH B 418 HOH B 448 SITE 1 AC2 6 ALA A 96 GLU A 116 GLU A 166 HOH A 409 SITE 2 AC2 6 HOH A 433 APR B 401 SITE 1 AC3 26 TRP A 28 VAL A 29 ARG A 51 ARG A 84 SITE 2 AC3 26 ALA A 96 GLY A 97 LEU A 98 MET A 132 SITE 3 AC3 26 GLU A 166 ARG A 196 MG A 302 HOH A 451 SITE 4 AC3 26 HOH A 486 HOH A 487 TRP B 46 GLU B 47 SITE 5 AC3 26 ASP B 133 GLY B 135 LEU B 136 HOH B 472 SITE 6 AC3 26 HOH B 476 HOH B 480 HOH B 484 HOH B 485 SITE 7 AC3 26 HOH B 507 HOH B 529 SITE 1 AC4 20 TRP A 46 GLU A 47 ASP A 133 GLY A 135 SITE 2 AC4 20 LEU A 136 HOH A 444 HOH A 461 TRP B 28 SITE 3 AC4 20 VAL B 29 ARG B 51 ARG B 84 ALA B 96 SITE 4 AC4 20 GLY B 97 LEU B 98 GLU B 166 MG B 301 SITE 5 AC4 20 HOH B 486 HOH B 504 HOH B 517 HOH B 547 CRYST1 112.466 40.623 99.685 90.00 121.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008892 0.000000 0.005436 0.00000 SCALE2 0.000000 0.024617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011758 0.00000