data_2DT6 # _entry.id 2DT6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DT6 pdb_00002dt6 10.2210/pdb2dt6/pdb RCSB RCSB025815 ? ? WWPDB D_1000025815 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DT7 . unspecified TargetDB hso003016611.1 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DT6 _pdbx_database_status.recvd_initial_deposition_date 2006-07-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuwasako, K.' 1 'He, F.' 2 'Inoue, M.' 3 'Tanaka, A.' 4 'Sugano, S.' 5 'Guentert, P.' 6 'Muto, Y.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1677 _citation.page_last 1689 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17098193 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.09.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kuwasako, K.' 1 ? primary 'He, F.' 2 ? primary 'Inoue, M.' 3 ? primary 'Tanaka, A.' 4 ? primary 'Sugano, S.' 5 ? primary 'Guentert, P.' 6 ? primary 'Muto, Y.' 7 ? primary 'Yokoyama, S.' 8 ? # _cell.entry_id 2DT6 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DT6 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Splicing factor 3 subunit 1' _entity.formula_weight 7478.227 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SURP domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Spliceosome-associated protein 114, SAP 114, SF3a120' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPS _entity_poly.pdbx_seq_one_letter_code_can GEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso003016611.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 VAL n 1 4 ARG n 1 5 ASN n 1 6 ILE n 1 7 VAL n 1 8 ASP n 1 9 LYS n 1 10 THR n 1 11 ALA n 1 12 SER n 1 13 PHE n 1 14 VAL n 1 15 ALA n 1 16 ARG n 1 17 ASN n 1 18 GLY n 1 19 PRO n 1 20 GLU n 1 21 PHE n 1 22 GLU n 1 23 ALA n 1 24 ARG n 1 25 ILE n 1 26 ARG n 1 27 GLN n 1 28 ASN n 1 29 GLU n 1 30 ILE n 1 31 ASN n 1 32 ASN n 1 33 PRO n 1 34 LYS n 1 35 PHE n 1 36 ASN n 1 37 PHE n 1 38 LEU n 1 39 ASN n 1 40 PRO n 1 41 ASN n 1 42 ASP n 1 43 PRO n 1 44 TYR n 1 45 HIS n 1 46 ALA n 1 47 TYR n 1 48 TYR n 1 49 ARG n 1 50 HIS n 1 51 LYS n 1 52 VAL n 1 53 SER n 1 54 GLU n 1 55 PHE n 1 56 LYS n 1 57 GLU n 1 58 GLY n 1 59 LYS n 1 60 ALA n 1 61 GLN n 1 62 GLU n 1 63 PRO n 1 64 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'SF3a120, SF3a1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET15b-SF3a120 SURP1' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SF3A1_HUMAN _struct_ref.pdbx_db_accession Q15459 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPS _struct_ref.pdbx_align_begin 48 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DT6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 64 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15459 _struct_ref_seq.db_align_beg 48 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 110 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 48 _struct_ref_seq.pdbx_auth_seq_align_end 110 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2DT6 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q15459 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'cloning artifact' _struct_ref_seq_dif.pdbx_auth_seq_num 47 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.0mM U-15N, 13C PROTEIN; 20mM soldium phosphate; 1mM d-DTT; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 AVANCE Bruker 700 ? 2 AVANCE Bruker 800 ? # _pdbx_nmr_refine.entry_id 2DT6 _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS, RESTRAINTED ENERGY MINIMIZATION' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DT6 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DT6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9321 'Kobayashi, N.' 4 'structure solution' CYANA 2.1 'Guntert, P.' 5 'structure solution' OPALp 1.4 'Koradi, R.' 6 refinement CYANA 2.1 'Guntert, P.' 7 refinement OPALp 1.4 'Koradi, R.' 8 # _exptl.entry_id 2DT6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DT6 _struct.title 'Solution structure of the first SURP domain of human splicing factor SF3a120' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DT6 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;structure genomics, SF3a120, SURP domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? GLY A 18 ? GLY A 47 GLY A 64 1 ? 18 HELX_P HELX_P2 2 PRO A 19 ? GLU A 29 ? PRO A 65 GLU A 75 1 ? 11 HELX_P HELX_P3 3 ASN A 32 ? ASN A 39 ? ASN A 78 ASN A 85 5 ? 8 HELX_P HELX_P4 4 TYR A 44 ? GLY A 58 ? TYR A 90 GLY A 104 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DT6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DT6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 47 47 GLY GLY A . n A 1 2 GLU 2 48 48 GLU GLU A . n A 1 3 VAL 3 49 49 VAL VAL A . n A 1 4 ARG 4 50 50 ARG ARG A . n A 1 5 ASN 5 51 51 ASN ASN A . n A 1 6 ILE 6 52 52 ILE ILE A . n A 1 7 VAL 7 53 53 VAL VAL A . n A 1 8 ASP 8 54 54 ASP ASP A . n A 1 9 LYS 9 55 55 LYS LYS A . n A 1 10 THR 10 56 56 THR THR A . n A 1 11 ALA 11 57 57 ALA ALA A . n A 1 12 SER 12 58 58 SER SER A . n A 1 13 PHE 13 59 59 PHE PHE A . n A 1 14 VAL 14 60 60 VAL VAL A . n A 1 15 ALA 15 61 61 ALA ALA A . n A 1 16 ARG 16 62 62 ARG ARG A . n A 1 17 ASN 17 63 63 ASN ASN A . n A 1 18 GLY 18 64 64 GLY GLY A . n A 1 19 PRO 19 65 65 PRO PRO A . n A 1 20 GLU 20 66 66 GLU GLU A . n A 1 21 PHE 21 67 67 PHE PHE A . n A 1 22 GLU 22 68 68 GLU GLU A . n A 1 23 ALA 23 69 69 ALA ALA A . n A 1 24 ARG 24 70 70 ARG ARG A . n A 1 25 ILE 25 71 71 ILE ILE A . n A 1 26 ARG 26 72 72 ARG ARG A . n A 1 27 GLN 27 73 73 GLN GLN A . n A 1 28 ASN 28 74 74 ASN ASN A . n A 1 29 GLU 29 75 75 GLU GLU A . n A 1 30 ILE 30 76 76 ILE ILE A . n A 1 31 ASN 31 77 77 ASN ASN A . n A 1 32 ASN 32 78 78 ASN ASN A . n A 1 33 PRO 33 79 79 PRO PRO A . n A 1 34 LYS 34 80 80 LYS LYS A . n A 1 35 PHE 35 81 81 PHE PHE A . n A 1 36 ASN 36 82 82 ASN ASN A . n A 1 37 PHE 37 83 83 PHE PHE A . n A 1 38 LEU 38 84 84 LEU LEU A . n A 1 39 ASN 39 85 85 ASN ASN A . n A 1 40 PRO 40 86 86 PRO PRO A . n A 1 41 ASN 41 87 87 ASN ASN A . n A 1 42 ASP 42 88 88 ASP ASP A . n A 1 43 PRO 43 89 89 PRO PRO A . n A 1 44 TYR 44 90 90 TYR TYR A . n A 1 45 HIS 45 91 91 HIS HIS A . n A 1 46 ALA 46 92 92 ALA ALA A . n A 1 47 TYR 47 93 93 TYR TYR A . n A 1 48 TYR 48 94 94 TYR TYR A . n A 1 49 ARG 49 95 95 ARG ARG A . n A 1 50 HIS 50 96 96 HIS HIS A . n A 1 51 LYS 51 97 97 LYS LYS A . n A 1 52 VAL 52 98 98 VAL VAL A . n A 1 53 SER 53 99 99 SER SER A . n A 1 54 GLU 54 100 100 GLU GLU A . n A 1 55 PHE 55 101 101 PHE PHE A . n A 1 56 LYS 56 102 102 LYS LYS A . n A 1 57 GLU 57 103 103 GLU GLU A . n A 1 58 GLY 58 104 104 GLY GLY A . n A 1 59 LYS 59 105 105 LYS LYS A . n A 1 60 ALA 60 106 106 ALA ALA A . n A 1 61 GLN 61 107 107 GLN GLN A . n A 1 62 GLU 62 108 108 GLU GLU A . n A 1 63 PRO 63 109 109 PRO PRO A . n A 1 64 SER 64 110 110 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 OD1 A ASP 54 ? ? HH A TYR 93 ? ? 1.59 2 6 OD1 A ASP 54 ? ? HH A TYR 93 ? ? 1.57 3 20 OD1 A ASP 54 ? ? HH A TYR 93 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 6 CD A ARG 70 ? ? NE A ARG 70 ? ? CZ A ARG 70 ? ? 134.02 123.60 10.42 1.40 N 2 6 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH1 A ARG 70 ? ? 123.54 120.30 3.24 0.50 N 3 6 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH2 A ARG 70 ? ? 116.64 120.30 -3.66 0.50 N 4 9 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH1 A ARG 70 ? ? 123.58 120.30 3.28 0.50 N 5 9 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH2 A ARG 70 ? ? 116.33 120.30 -3.97 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 GLU A 48 ? ? -144.16 -51.44 2 4 GLU A 48 ? ? -144.26 -58.89 3 5 GLU A 48 ? ? -168.57 -51.81 4 6 GLU A 48 ? ? -153.35 -56.99 5 7 GLU A 48 ? ? -172.47 -51.01 6 8 GLU A 48 ? ? -156.10 -58.11 7 9 GLU A 48 ? ? -146.42 -63.29 8 10 GLU A 48 ? ? -162.24 -49.73 9 10 ILE A 76 ? ? -57.45 -5.45 10 13 GLU A 48 ? ? -15.36 -60.76 11 15 GLU A 48 ? ? -149.02 -55.21 12 15 ASN A 77 ? ? -99.74 49.29 13 17 GLU A 48 ? ? -149.29 -52.97 14 19 GLU A 48 ? ? -128.69 -51.85 15 20 GLU A 48 ? ? -147.19 -44.75 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 90 ? ? 0.077 'SIDE CHAIN' 2 4 TYR A 94 ? ? 0.070 'SIDE CHAIN' 3 7 ARG A 62 ? ? 0.101 'SIDE CHAIN' 4 8 ARG A 50 ? ? 0.130 'SIDE CHAIN' 5 9 TYR A 90 ? ? 0.088 'SIDE CHAIN' 6 9 TYR A 94 ? ? 0.064 'SIDE CHAIN' 7 13 ARG A 50 ? ? 0.079 'SIDE CHAIN' 8 15 TYR A 90 ? ? 0.077 'SIDE CHAIN' 9 15 ARG A 95 ? ? 0.089 'SIDE CHAIN' 10 17 TYR A 90 ? ? 0.075 'SIDE CHAIN' 11 17 ARG A 95 ? ? 0.116 'SIDE CHAIN' 12 20 ARG A 50 ? ? 0.113 'SIDE CHAIN' #