HEADER LIPID BINDING PROTEIN 11-JUL-06 2DT8 TITLE FATTY ACID BINDING OF A DEGV FAMILY PROTEIN FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEGV FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FATTY ACID BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS FATTY ACID BINDING, DEGV, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIPID BINDING KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.H.REHSE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 2 (RSGI) REVDAT 3 13-JUL-11 2DT8 1 VERSN REVDAT 2 24-FEB-09 2DT8 1 VERSN REVDAT 1 19-JUN-07 2DT8 0 JRNL AUTH P.H.REHSE,S.YOKOYAMA JRNL TITL FATTY ACID BINDING OF A DEGV FAMILY PROTEIN FROM THERMUS JRNL TITL 2 THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 41 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 907 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 39 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68900 REMARK 3 B22 (A**2) : -2.23200 REMARK 3 B33 (A**2) : 0.54300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.04800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.37 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.77 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.96 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : THROUGHOUT REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DT8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-06. REMARK 100 THE RCSB ID CODE IS RCSB025817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791, 0.9000, 0.9794 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41410 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 42.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.779 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.46 REMARK 200 R MERGE FOR SHELL (I) : 0.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 0.05M ZN ACETATE, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.77400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.48450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.77400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.48450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 58 CA PHE A 58 CB 0.251 REMARK 500 PRO A 59 CD PRO A 59 N 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 CB - CA - C ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG A 18 N - CA - CB ANGL. DEV. = -13.0 DEGREES REMARK 500 ALA A 56 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 PHE A 58 N - CA - CB ANGL. DEV. = 23.3 DEGREES REMARK 500 PRO A 59 CA - N - CD ANGL. DEV. = -11.4 DEGREES REMARK 500 PRO A 59 N - CA - CB ANGL. DEV. = 8.0 DEGREES REMARK 500 PRO A 59 C - N - CD ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 109 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG A 202 CD - NE - CZ ANGL. DEV. = -22.8 DEGREES REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -11.4 DEGREES REMARK 500 GLU A 235 CB - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 GLU A 235 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 ALA A 277 CB - CA - C ANGL. DEV. = -10.3 DEGREES REMARK 500 ALA A 277 N - CA - CB ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 40 -40.67 65.85 REMARK 500 SER A 119 -140.47 51.43 REMARK 500 THR A 180 -7.21 -148.16 REMARK 500 LEU A 182 -128.30 49.08 REMARK 500 ALA A 198 38.73 -142.63 REMARK 500 ALA A 255 63.90 -150.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 38 0.10 SIDE CHAIN REMARK 500 ARG A 202 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 210 -10.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 58 17.8 L L OUTSIDE RANGE REMARK 500 GLU A 235 23.7 L L OUTSIDE RANGE REMARK 500 ASP A 236 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 937 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 948 DISTANCE = 5.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 105 OE2 REMARK 620 2 HOH A1033 O 100.1 REMARK 620 3 GLU A 67 OE2 111.3 96.1 REMARK 620 4 GLU A 47 OE1 151.9 88.3 94.2 REMARK 620 5 GLU A 47 OE2 95.0 99.2 146.6 57.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003001721.1 RELATED DB: TARGETDB DBREF 2DT8 A 1 280 UNP Q5SJQ7 Q5SJQ7_THET8 1 280 SEQADV 2DT8 MSE A 1 UNP Q5SJQ7 MET 1 MODIFIED RESIDUE SEQADV 2DT8 MSE A 124 UNP Q5SJQ7 MET 124 MODIFIED RESIDUE SEQADV 2DT8 MSE A 125 UNP Q5SJQ7 MET 125 MODIFIED RESIDUE SEQRES 1 A 280 MSE ARG ILE THR LEU VAL THR ASP SER THR SER ASP LEU SEQRES 2 A 280 PRO GLN ASP LEU ARG GLY ARG LEU GLY VAL ARG VAL VAL SEQRES 3 A 280 PRO LEU TYR VAL ASN LEU SER GLY ALA ILE TYR ARG ASP SEQRES 4 A 280 TRP GLU GLU ILE THR PRO THR GLU ILE PHE GLN LYS VAL SEQRES 5 A 280 ARG GLU GLY ALA ALA PHE PRO THR THR SER GLN PRO SER SEQRES 6 A 280 PRO GLU ASP PHE ALA ARG VAL TYR ARG GLU ALA LEU GLU SEQRES 7 A 280 GLU ALA ASP HIS VAL LEU SER LEU HIS ILE SER GLY LYS SEQRES 8 A 280 LEU SER GLY THR VAL GLN SER ALA GLU LEU ALA ALA GLN SEQRES 9 A 280 GLU PHE PRO GLY ARG VAL THR VAL VAL ASP THR GLN ALA SEQRES 10 A 280 ALA SER LEU GLY VAL GLY MSE MSE VAL LEU ARG ALA LYS SEQRES 11 A 280 GLU LEU LEU GLU GLU GLY GLN SER LEU GLU ALA VAL LEU SEQRES 12 A 280 ALA GLU LEU GLU ARG LEU ARG ARG ASP HIS PHE VAL ARG SEQRES 13 A 280 PHE SER VAL ALA THR LEU GLU PHE LEU LYS ARG GLY GLY SEQRES 14 A 280 ARG ILE GLY GLY ALA GLN ALA PHE LEU GLY THR LEU LEU SEQRES 15 A 280 ASN LEU LYS PRO VAL LEU THR LEU LYS GLU GLY ARG VAL SEQRES 16 A 280 GLU ALA ALA GLY ARG ALA ARG GLY GLU LYS LYS ALA ARG SEQRES 17 A 280 GLU GLU ILE LEU LYS ALA PHE ARG ALA TRP ALA GLU GLY SEQRES 18 A 280 ARG LYS ARG ILE ARG ALA TYR PHE LEU TYR SER GLY ASP SEQRES 19 A 280 GLU ASP ALA VAL ALA ALA LEU ARG GLN GLU VAL LEU ALA SEQRES 20 A 280 SER GLY LEU PRO VAL GLU GLU ALA LEU VAL ASN GLU LEU SEQRES 21 A 280 GLY ALA VAL ILE ALA SER HIS THR GLY PRO GLY THR TYR SEQRES 22 A 280 GLY PHE TYR ALA TYR SER LEU MODRES 2DT8 MSE A 1 MET SELENOMETHIONINE MODRES 2DT8 MSE A 124 MET SELENOMETHIONINE MODRES 2DT8 MSE A 125 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 124 8 HET MSE A 125 8 HET ZN A 501 1 HET PLM A 701 18 HET GOL A 601 6 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM PLM PALMITIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 PLM C16 H32 O2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *332(H2 O) HELIX 1 1 THR A 10 ASP A 12 5 3 HELIX 2 2 PRO A 14 GLY A 19 1 6 HELIX 3 3 THR A 44 GLU A 54 1 11 HELIX 4 4 SER A 65 LEU A 77 1 13 HELIX 5 5 GLY A 94 GLN A 104 1 11 HELIX 6 6 SER A 119 GLY A 136 1 18 HELIX 7 7 SER A 138 ASP A 152 1 15 HELIX 8 8 LEU A 162 GLY A 169 1 8 HELIX 9 9 ILE A 171 LEU A 178 5 8 HELIX 10 10 GLY A 203 GLU A 220 1 18 HELIX 11 11 GLU A 235 SER A 248 1 14 HELIX 12 12 GLY A 261 GLY A 269 1 9 SHEET 1 A 4 ARG A 24 VAL A 26 0 SHEET 2 A 4 ILE A 3 ASP A 8 1 N THR A 7 O ARG A 24 SHEET 3 A 4 HIS A 82 HIS A 87 1 O LEU A 84 N THR A 4 SHEET 4 A 4 VAL A 110 ASP A 114 1 O VAL A 113 N SER A 85 SHEET 1 B 3 ALA A 35 ARG A 38 0 SHEET 2 B 3 TYR A 29 LEU A 32 -1 N VAL A 30 O TYR A 37 SHEET 3 B 3 THR A 60 SER A 62 -1 O THR A 60 N ASN A 31 SHEET 1 C 4 PHE A 154 SER A 158 0 SHEET 2 C 4 TYR A 273 SER A 279 -1 O ALA A 277 N PHE A 154 SHEET 3 C 4 ILE A 225 TYR A 231 -1 N TYR A 228 O TYR A 276 SHEET 4 C 4 VAL A 252 GLU A 259 1 O LEU A 256 N PHE A 229 SHEET 1 D 2 LYS A 185 LYS A 191 0 SHEET 2 D 2 ARG A 194 ALA A 201 -1 O ALA A 201 N LYS A 185 LINK C MSE A 1 N ARG A 2 1555 1555 1.32 LINK C GLY A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N VAL A 126 1555 1555 1.33 LINK ZN ZN A 501 OE2 GLU A 105 1555 1555 1.97 LINK ZN ZN A 501 O HOH A1033 1555 1555 2.17 LINK ZN ZN A 501 OE2 GLU A 67 1555 1555 1.93 LINK ZN ZN A 501 OE1 GLU A 47 1555 4545 2.48 LINK ZN ZN A 501 OE2 GLU A 47 1555 4545 2.04 SITE 1 AC1 4 GLU A 47 GLU A 67 GLU A 105 HOH A1033 SITE 1 AC2 12 LEU A 28 THR A 61 SER A 62 GLN A 63 SITE 2 AC2 12 LEU A 92 SER A 93 ARG A 170 LEU A 230 SITE 3 AC2 12 HIS A 267 TYR A 276 HOH A 735 HOH A 773 SITE 1 AC3 9 ARG A 150 ARG A 151 HIS A 153 THR A 189 SITE 2 AC3 9 LEU A 190 LYS A 191 HOH A 711 HOH A 760 SITE 3 AC3 9 HOH A 814 CRYST1 105.548 36.969 81.461 90.00 127.07 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009474 0.000000 0.007156 0.00000 SCALE2 0.000000 0.027050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015384 0.00000 HETATM 1 N MSE A 1 45.519 32.261 21.651 1.00 22.43 N HETATM 2 CA MSE A 1 45.733 31.788 20.252 1.00 20.53 C HETATM 3 C MSE A 1 44.639 32.345 19.344 1.00 18.62 C HETATM 4 O MSE A 1 43.640 32.897 19.809 1.00 16.67 O HETATM 5 CB MSE A 1 45.772 30.241 20.195 1.00 24.97 C HETATM 6 CG MSE A 1 44.515 29.540 20.700 1.00 20.88 C HETATM 7 SE MSE A 1 44.522 27.570 20.939 1.00 17.53 SE HETATM 8 CE MSE A 1 42.748 27.451 21.705 1.00 17.88 C