HEADER TRANSFERASE 12-JUL-06 2DTJ TITLE CRYSTAL STRUCTURE OF REGULATORY SUBUNIT OF ASPARTATE KINASE FROM TITLE 2 CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: REGULATORY SUBUNIT, ASPARTOKINASE ALPHA SUBUNIT AND COMPND 5 ASPARTOKINASE BETA SUBUNIT; COMPND 6 EC: 2.7.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON PLUS RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS PROTEIN-LIGAND COMPLEX, REGULATORY SUBUNIT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.YOSHIDA,T.TOMITA,S.FUSHINOBU,T.KUZUYAMA,M.NISHIYAMA REVDAT 4 08-NOV-23 2DTJ 1 REMARK REVDAT 3 21-DEC-22 2DTJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DTJ 1 VERSN REVDAT 1 01-MAY-07 2DTJ 0 JRNL AUTH A.YOSHIDA,T.TOMITA,T.KURIHARA,S.FUSHINOBU,T.KUZUYAMA, JRNL AUTH 2 M.NISHIYAMA JRNL TITL STRUCTURAL INSIGHT INTO CONCERTED INHIBITION OF JRNL TITL 2 ALPHA(2)BETA(2)-TYPE ASPARTATE KINASE FROM CORYNEBACTERIUM JRNL TITL 3 GLUTAMICUM JRNL REF J.MOL.BIOL. V. 368 521 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17350037 JRNL DOI 10.1016/J.JMB.2007.02.017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.THIERBACH,J.KALINOWSKI,B.BACHMANN,A.PUHLER REMARK 1 TITL CLONING OF A DNA FRAGMENT FROM CORYNEBACTERIUM GLUTAMICUM REMARK 1 TITL 2 CONFERRING AMINOETHYL CYSTEINE RESISTANCE AND FEEDBACK REMARK 1 TITL 3 RESISTANCE TO ASPARTOKINASE REMARK 1 REF APPL.MICROBIOL.BIOTECHNOL. V. 32 443 1990 REMARK 1 REFN ISSN 0175-7598 REMARK 1 PMID 1366393 REMARK 1 DOI 10.1007/BF00903780 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.KALINOWSKI,J.CREMER,B.BACHMANN,L.EGGELING,H.SAHM,A.PUHLER REMARK 1 TITL GENETIC AND BIOCHEMICAL ANALYSIS OF THE ASPARTOKINASE FROM REMARK 1 TITL 2 CORYNEBACTERIUM GLUTAMICUM REMARK 1 REF MOL.MICROBIOL. V. 5 1197 1991 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 1956296 REMARK 1 DOI 10.1111/J.1365-2958.1991.TB01893.X REMARK 1 REFERENCE 3 REMARK 1 AUTH C.KATO,T.KURIHARA,N.KOBASHI,H.YAMANE,M.NISHIYAMA REMARK 1 TITL CONVERSION OF FEEDBACK REGULATION IN ASPARTATE KINASE BY REMARK 1 TITL 2 DOMAIN EXCHANGE REMARK 1 REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 316 802 2004 REMARK 1 REFN ISSN 0006-291X REMARK 1 PMID 15033471 REMARK 1 DOI 10.1016/J.BBRC.2004.02.122 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1384008.870 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 42976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2121 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6542 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 363 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2471 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : 0.73000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM SIGMAA (A) : 0.06 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.027 REMARK 3 BOND ANGLES (DEGREES) : 2.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.620 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.710 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.970 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 52.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : THR.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CITRATE2.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : THR.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : CITRATE2.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000025825. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M CITRATE, REMARK 280 36 %(W/V) PEG 4000, 10MM THREONINE, PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.99450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.99450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 510 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 168 REMARK 465 GLY A 169 REMARK 465 THR A 170 REMARK 465 GLY A 171 REMARK 465 ARG A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 MET B 1 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 GLU B 161 REMARK 465 ASP B 162 REMARK 465 GLY B 169 REMARK 465 THR B 170 REMARK 465 GLY B 171 REMARK 465 ARG B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ASP A 162 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 150 O HOH A 531 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 85 OG1 THR A 87 2556 1.92 REMARK 500 O HOH B 631 O HOH B 631 2555 2.01 REMARK 500 O HOH A 438 O HOH A 438 2556 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 135 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 88 174.77 172.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THR B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DT9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN FROM THERMUS FLAVUS DBREF 2DTJ A 1 172 UNP P26512 AK_CORGL 250 421 DBREF 2DTJ B 1 172 UNP P26512 AK_CORGL 250 421 SEQADV 2DTJ MET A 1 UNP P26512 VAL 250 VARIANT SEQADV 2DTJ HIS A 173 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS A 174 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS A 175 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS A 176 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS A 177 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS A 178 UNP P26512 EXPRESSION TAG SEQADV 2DTJ MET B 1 UNP P26512 VAL 250 VARIANT SEQADV 2DTJ HIS B 173 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS B 174 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS B 175 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS B 176 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS B 177 UNP P26512 EXPRESSION TAG SEQADV 2DTJ HIS B 178 UNP P26512 INSERTION SEQRES 1 A 178 MET GLU GLU ALA VAL LEU THR GLY VAL ALA THR ASP LYS SEQRES 2 A 178 SER GLU ALA LYS VAL THR VAL LEU GLY ILE SER ASP LYS SEQRES 3 A 178 PRO GLY GLU ALA ALA LYS VAL PHE ARG ALA LEU ALA ASP SEQRES 4 A 178 ALA GLU ILE ASN ILE ASP MET VAL LEU GLN ASN VAL SER SEQRES 5 A 178 SER VAL GLU ASP GLY THR THR ASP ILE THR PHE THR CYS SEQRES 6 A 178 PRO ARG SER ASP GLY ARG ARG ALA MET GLU ILE LEU LYS SEQRES 7 A 178 LYS LEU GLN VAL GLN GLY ASN TRP THR ASN VAL LEU TYR SEQRES 8 A 178 ASP ASP GLN VAL GLY LYS VAL SER LEU VAL GLY ALA GLY SEQRES 9 A 178 MET LYS SER HIS PRO GLY VAL THR ALA GLU PHE MET GLU SEQRES 10 A 178 ALA LEU ARG ASP VAL ASN VAL ASN ILE GLU LEU ILE SER SEQRES 11 A 178 THR SER GLU ILE ARG ILE SER VAL LEU ILE ARG GLU ASP SEQRES 12 A 178 ASP LEU ASP ALA ALA ALA ARG ALA LEU HIS GLU GLN PHE SEQRES 13 A 178 GLN LEU GLY GLY GLU ASP GLU ALA VAL VAL TYR ALA GLY SEQRES 14 A 178 THR GLY ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 178 MET GLU GLU ALA VAL LEU THR GLY VAL ALA THR ASP LYS SEQRES 2 B 178 SER GLU ALA LYS VAL THR VAL LEU GLY ILE SER ASP LYS SEQRES 3 B 178 PRO GLY GLU ALA ALA LYS VAL PHE ARG ALA LEU ALA ASP SEQRES 4 B 178 ALA GLU ILE ASN ILE ASP MET VAL LEU GLN ASN VAL SER SEQRES 5 B 178 SER VAL GLU ASP GLY THR THR ASP ILE THR PHE THR CYS SEQRES 6 B 178 PRO ARG SER ASP GLY ARG ARG ALA MET GLU ILE LEU LYS SEQRES 7 B 178 LYS LEU GLN VAL GLN GLY ASN TRP THR ASN VAL LEU TYR SEQRES 8 B 178 ASP ASP GLN VAL GLY LYS VAL SER LEU VAL GLY ALA GLY SEQRES 9 B 178 MET LYS SER HIS PRO GLY VAL THR ALA GLU PHE MET GLU SEQRES 10 B 178 ALA LEU ARG ASP VAL ASN VAL ASN ILE GLU LEU ILE SER SEQRES 11 B 178 THR SER GLU ILE ARG ILE SER VAL LEU ILE ARG GLU ASP SEQRES 12 B 178 ASP LEU ASP ALA ALA ALA ARG ALA LEU HIS GLU GLN PHE SEQRES 13 B 178 GLN LEU GLY GLY GLU ASP GLU ALA VAL VAL TYR ALA GLY SEQRES 14 B 178 THR GLY ARG HIS HIS HIS HIS HIS HIS HET THR A 401 8 HET THR B 402 8 HET CIT B 501 13 HETNAM THR THREONINE HETNAM CIT CITRIC ACID FORMUL 3 THR 2(C4 H9 N O3) FORMUL 5 CIT C6 H8 O7 FORMUL 6 HOH *275(H2 O) HELIX 1 1 GLY A 28 ALA A 40 1 13 HELIX 2 2 ASP A 69 LYS A 79 1 11 HELIX 3 3 HIS A 108 VAL A 122 1 15 HELIX 4 4 ASP A 144 GLN A 157 1 14 HELIX 5 5 GLY B 28 ALA B 40 1 13 HELIX 6 6 ARG B 67 GLY B 84 1 18 HELIX 7 7 GLY B 104 SER B 107 5 4 HELIX 8 8 HIS B 108 VAL B 122 1 15 HELIX 9 9 ASP B 144 GLN B 157 1 14 SHEET 1 A 9 VAL A 165 VAL A 166 0 SHEET 2 A 9 VAL A 5 ASP A 12 -1 N LEU A 6 O VAL A 165 SHEET 3 A 9 VAL A 95 ALA A 103 -1 O VAL A 101 N GLY A 8 SHEET 4 A 9 ARG A 135 ARG A 141 -1 O ILE A 140 N GLY A 96 SHEET 5 A 9 LEU A 128 SER A 132 -1 N SER A 130 O SER A 137 SHEET 6 A 9 MET B 46 GLN B 49 -1 O VAL B 47 N THR A 131 SHEET 7 A 9 THR B 58 PRO B 66 -1 O THR B 62 N LEU B 48 SHEET 8 A 9 GLU B 15 SER B 24 -1 N ILE B 23 O THR B 59 SHEET 9 A 9 ASN B 88 ASP B 92 -1 O LEU B 90 N THR B 19 SHEET 1 B 9 ASN A 88 ASP A 92 0 SHEET 2 B 9 GLU A 15 SER A 24 -1 N LEU A 21 O ASN A 88 SHEET 3 B 9 THR A 58 PRO A 66 -1 O ILE A 61 N VAL A 20 SHEET 4 B 9 MET A 46 GLN A 49 -1 N LEU A 48 O THR A 62 SHEET 5 B 9 LEU B 128 SER B 132 -1 O ILE B 129 N GLN A 49 SHEET 6 B 9 ARG B 135 ARG B 141 -1 O SER B 137 N SER B 130 SHEET 7 B 9 VAL B 95 ALA B 103 -1 N GLY B 96 O ILE B 140 SHEET 8 B 9 VAL B 5 ASP B 12 -1 N VAL B 5 O ALA B 103 SHEET 9 B 9 VAL B 165 VAL B 166 -1 O VAL B 165 N LEU B 6 SITE 1 AC1 11 ASP A 25 LYS A 26 GLY A 28 GLU A 29 SITE 2 AC1 11 ALA A 30 GLN A 49 THR A 59 HOH A 403 SITE 3 AC1 11 HOH A 410 ASN B 125 ILE B 126 SITE 1 AC2 11 ASN A 125 ILE A 126 ASP B 25 LYS B 26 SITE 2 AC2 11 PRO B 27 GLY B 28 GLU B 29 ALA B 30 SITE 3 AC2 11 GLN B 49 HOH B 502 HOH B 513 SITE 1 AC3 4 GLY B 22 THR B 58 ASN B 85 THR B 87 CRYST1 79.989 59.010 75.782 90.00 116.25 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012502 0.000000 0.006164 0.00000 SCALE2 0.000000 0.016946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014712 0.00000