HEADER DNA BINDING PROTEIN 21-JUL-06 2DUD TITLE CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL SINGLE-STRANDED DNA-BINDING TITLE 2 PROTEIN(HMTSSB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-STRANDED DNA-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SINGLE-STRANDED DNA-BINDING PROTEIN, SSB; COMPND 5 SYNONYM: MT-SSB, MTSSB, PWP1-INTERACTING PROTEIN 17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PX050223-18; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MITOCHONDRIA, SSB, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.DONG,Y.BESSHO,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 25-OCT-23 2DUD 1 REMARK REVDAT 2 24-FEB-09 2DUD 1 VERSN REVDAT 1 21-JAN-07 2DUD 0 JRNL AUTH X.DONG,Y.BESSHO,M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL SINGLE-STRANDED JRNL TITL 2 DNA-BINDING PROTEIN(HMTSSB) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1599585.570 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 445 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1028 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.052 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1539 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.47000 REMARK 3 B22 (A**2) : 4.47000 REMARK 3 B33 (A**2) : -8.94000 REMARK 3 B12 (A**2) : 7.92000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.50 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.067 REMARK 3 BOND ANGLES (DEGREES) : 4.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 31.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 4.380 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.050 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.070 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.020; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 38.89 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000025853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : DOUBLE FLAT SI (III) CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 68.4828 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1S3O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CHES, 0.2M NACL, 10% PEG 8000, PH 9.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.16000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.08000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.12000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.04000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.20000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.16000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 30.08000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.04000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.12000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 75.20000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 160.35000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 92.57812 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.08000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 GLU A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 31 REMARK 465 VAL A 32 REMARK 465 GLU A 33 REMARK 465 GLY A 34 REMARK 465 LYS A 35 REMARK 465 ARG A 50 REMARK 465 SER A 51 REMARK 465 GLY A 52 REMARK 465 ASP A 53 REMARK 465 SER A 54 REMARK 465 GLU A 55 REMARK 465 VAL A 56 REMARK 465 TYR A 57 REMARK 465 GLN A 58 REMARK 465 LEU A 59 REMARK 465 GLY A 60 REMARK 465 ASP A 61 REMARK 465 LEU A 124 REMARK 465 SER A 125 REMARK 465 ASP A 126 REMARK 465 GLN A 127 REMARK 465 THR A 128 REMARK 465 LYS A 129 REMARK 465 GLU A 130 REMARK 465 LYS A 131 REMARK 465 GLU A 132 REMARK 465 HIS B 0 REMARK 465 GLU B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 SER B 7 REMARK 465 LEU B 8 REMARK 465 VAL B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 GLN B 31 REMARK 465 VAL B 32 REMARK 465 GLU B 33 REMARK 465 GLY B 34 REMARK 465 LYS B 35 REMARK 465 TRP B 49 REMARK 465 ARG B 50 REMARK 465 SER B 51 REMARK 465 GLY B 52 REMARK 465 ASP B 53 REMARK 465 SER B 54 REMARK 465 GLU B 55 REMARK 465 VAL B 56 REMARK 465 TYR B 57 REMARK 465 GLN B 58 REMARK 465 LEU B 59 REMARK 465 GLY B 60 REMARK 465 ASP B 61 REMARK 465 VAL B 62 REMARK 465 SER B 63 REMARK 465 LEU B 124 REMARK 465 SER B 125 REMARK 465 ASP B 126 REMARK 465 GLN B 127 REMARK 465 THR B 128 REMARK 465 LYS B 129 REMARK 465 GLU B 130 REMARK 465 LYS B 131 REMARK 465 GLU B 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 12 N ARG A 12 CA 0.156 REMARK 500 VAL A 17 CB VAL A 17 CG2 -0.234 REMARK 500 ASP A 26 CG ASP A 26 OD1 0.156 REMARK 500 ASN A 36 N ASN A 36 CA 0.220 REMARK 500 PRO A 37 CB PRO A 37 CG 0.510 REMARK 500 PRO A 37 CG PRO A 37 CD 0.217 REMARK 500 ILE A 40 N ILE A 40 CA -0.149 REMARK 500 SER A 42 CB SER A 42 OG 0.111 REMARK 500 LEU A 43 C LEU A 43 O 0.164 REMARK 500 ASN A 46 CB ASN A 46 CG -0.259 REMARK 500 GLU A 47 CD GLU A 47 OE1 -0.087 REMARK 500 GLU A 47 CD GLU A 47 OE2 0.103 REMARK 500 VAL A 62 N VAL A 62 CA 0.134 REMARK 500 VAL A 62 CA VAL A 62 CB 0.202 REMARK 500 THR A 66 C THR A 66 O -0.188 REMARK 500 TRP A 68 CE3 TRP A 68 CZ3 0.131 REMARK 500 HIS A 69 C HIS A 69 O -0.125 REMARK 500 ARG A 70 CG ARG A 70 CD 0.327 REMARK 500 ARG A 70 NE ARG A 70 CZ 0.110 REMARK 500 ARG A 70 CZ ARG A 70 NH2 0.107 REMARK 500 ARG A 70 C ARG A 70 O 0.120 REMARK 500 ARG A 75 CG ARG A 75 CD 0.225 REMARK 500 GLY A 77 C GLY A 77 O 0.132 REMARK 500 ARG A 79 CG ARG A 79 CD 0.239 REMARK 500 ALA A 82 CA ALA A 82 C -0.160 REMARK 500 TYR A 83 CE2 TYR A 83 CD2 0.131 REMARK 500 GLY A 89 C GLY A 89 O -0.113 REMARK 500 ARG A 91 NE ARG A 91 CZ 0.090 REMARK 500 ARG A 91 CZ ARG A 91 NH2 0.086 REMARK 500 ILE A 92 C ILE A 92 O -0.129 REMARK 500 TYR A 93 CG TYR A 93 CD2 0.102 REMARK 500 TYR A 93 CD1 TYR A 93 CE1 0.162 REMARK 500 TYR A 93 CE1 TYR A 93 CZ 0.101 REMARK 500 TYR A 93 CE2 TYR A 93 CD2 0.115 REMARK 500 LEU A 94 C LEU A 94 O -0.156 REMARK 500 GLU A 95 CD GLU A 95 OE1 0.114 REMARK 500 GLY A 96 C GLY A 96 O 0.169 REMARK 500 LYS A 97 CE LYS A 97 NZ 0.178 REMARK 500 TYR A 100 CG TYR A 100 CD2 -0.101 REMARK 500 TYR A 100 CE1 TYR A 100 CZ -0.150 REMARK 500 TYR A 100 C TYR A 100 O 0.136 REMARK 500 TYR A 103 C TYR A 103 O -0.137 REMARK 500 ASN A 108 CB ASN A 108 CG -0.179 REMARK 500 ARG A 111 CB ARG A 111 CG 0.209 REMARK 500 ARG A 111 NE ARG A 111 CZ 0.135 REMARK 500 ARG A 111 CZ ARG A 111 NH1 0.106 REMARK 500 ARG A 111 CZ ARG A 111 NH2 0.123 REMARK 500 GLN A 112 CB GLN A 112 CG 0.177 REMARK 500 GLN A 112 CG GLN A 112 CD 0.246 REMARK 500 ALA A 113 CA ALA A 113 CB 0.150 REMARK 500 REMARK 500 THIS ENTRY HAS 95 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 13 O - C - N ANGL. DEV. = -11.2 DEGREES REMARK 500 VAL A 17 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 VAL A 23 CG1 - CB - CG2 ANGL. DEV. = -15.0 DEGREES REMARK 500 ASP A 26 CB - CG - OD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ASP A 26 CB - CG - OD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 LEU A 29 CB - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU A 43 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 LEU A 43 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 THR A 45 CA - CB - CG2 ANGL. DEV. = 9.8 DEGREES REMARK 500 GLU A 47 CG - CD - OE1 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 75 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 TYR A 83 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 LYS A 87 CD - CE - NZ ANGL. DEV. = -17.8 DEGREES REMARK 500 SER A 90 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ILE A 98 CB - CG1 - CD1 ANGL. DEV. = -18.2 DEGREES REMARK 500 LYS A 106 CA - C - N ANGL. DEV. = -18.8 DEGREES REMARK 500 LYS A 106 O - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 ALA A 113 N - CA - CB ANGL. DEV. = 8.7 DEGREES REMARK 500 THR A 115 CA - CB - CG2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASN A 120 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 ARG B 12 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 12 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 16 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 LEU B 19 CB - CG - CD1 ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP B 26 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 LEU B 29 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU B 43 CB - CG - CD1 ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 75 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU B 78 CB - CG - CD1 ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU B 78 CB - CG - CD2 ANGL. DEV. = 12.4 DEGREES REMARK 500 LYS B 88 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG B 91 NE - CZ - NH1 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG B 91 NE - CZ - NH2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ILE B 92 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 GLU B 102 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 GLU B 102 CG - CD - OE2 ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP B 105 OD1 - CG - OD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP B 105 CB - CG - OD2 ANGL. DEV. = 9.8 DEGREES REMARK 500 LYS B 106 C - N - CA ANGL. DEV. = 19.6 DEGREES REMARK 500 LYS B 106 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG B 110 NH1 - CZ - NH2 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -9.1 DEGREES REMARK 500 ARG B 111 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 111 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ALA B 113 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 ALA B 113 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -120.90 -113.14 REMARK 500 LEU A 14 95.34 151.60 REMARK 500 ASP A 26 143.36 -37.10 REMARK 500 PHE A 74 -71.25 -101.72 REMARK 500 ARG A 75 134.98 -12.89 REMARK 500 LYS A 88 126.13 -28.69 REMARK 500 ASP A 105 -126.34 -103.82 REMARK 500 LYS A 106 49.75 -50.31 REMARK 500 ARG A 110 -162.51 -125.98 REMARK 500 PRO B 37 -178.92 -69.54 REMARK 500 VAL B 38 127.43 -171.18 REMARK 500 LYS B 106 43.90 154.01 REMARK 500 ASN B 107 1.02 90.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 36 PRO A 37 -142.95 REMARK 500 ASP A 105 LYS A 106 140.46 REMARK 500 ASN B 108 VAL B 109 -127.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS B 69 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 105 -10.46 REMARK 500 GLU B 102 -11.53 REMARK 500 ALA B 113 10.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001116.1 RELATED DB: TARGETDB DBREF 2DUD A 0 132 UNP Q04837 SSB_HUMAN 16 148 DBREF 2DUD B 0 132 UNP Q04837 SSB_HUMAN 16 148 SEQRES 1 A 133 HIS GLU SER GLU THR THR THR SER LEU VAL LEU GLU ARG SEQRES 2 A 133 SER LEU ASN ARG VAL HIS LEU LEU GLY ARG VAL GLY GLN SEQRES 3 A 133 ASP PRO VAL LEU ARG GLN VAL GLU GLY LYS ASN PRO VAL SEQRES 4 A 133 THR ILE PHE SER LEU ALA THR ASN GLU MET TRP ARG SER SEQRES 5 A 133 GLY ASP SER GLU VAL TYR GLN LEU GLY ASP VAL SER GLN SEQRES 6 A 133 LYS THR THR TRP HIS ARG ILE SER VAL PHE ARG PRO GLY SEQRES 7 A 133 LEU ARG ASP VAL ALA TYR GLN TYR VAL LYS LYS GLY SER SEQRES 8 A 133 ARG ILE TYR LEU GLU GLY LYS ILE ASP TYR GLY GLU TYR SEQRES 9 A 133 MET ASP LYS ASN ASN VAL ARG ARG GLN ALA THR THR ILE SEQRES 10 A 133 ILE ALA ASP ASN ILE ILE PHE LEU SER ASP GLN THR LYS SEQRES 11 A 133 GLU LYS GLU SEQRES 1 B 133 HIS GLU SER GLU THR THR THR SER LEU VAL LEU GLU ARG SEQRES 2 B 133 SER LEU ASN ARG VAL HIS LEU LEU GLY ARG VAL GLY GLN SEQRES 3 B 133 ASP PRO VAL LEU ARG GLN VAL GLU GLY LYS ASN PRO VAL SEQRES 4 B 133 THR ILE PHE SER LEU ALA THR ASN GLU MET TRP ARG SER SEQRES 5 B 133 GLY ASP SER GLU VAL TYR GLN LEU GLY ASP VAL SER GLN SEQRES 6 B 133 LYS THR THR TRP HIS ARG ILE SER VAL PHE ARG PRO GLY SEQRES 7 B 133 LEU ARG ASP VAL ALA TYR GLN TYR VAL LYS LYS GLY SER SEQRES 8 B 133 ARG ILE TYR LEU GLU GLY LYS ILE ASP TYR GLY GLU TYR SEQRES 9 B 133 MET ASP LYS ASN ASN VAL ARG ARG GLN ALA THR THR ILE SEQRES 10 B 133 ILE ALA ASP ASN ILE ILE PHE LEU SER ASP GLN THR LYS SEQRES 11 B 133 GLU LYS GLU HELIX 1 1 ARG A 75 VAL A 86 1 12 HELIX 2 2 GLY B 77 VAL B 86 1 10 SHEET 1 A12 VAL A 28 LEU A 29 0 SHEET 2 A12 THR A 39 MET A 48 -1 O ILE A 40 N VAL A 28 SHEET 3 A12 GLN A 64 VAL A 73 -1 O HIS A 69 N LEU A 43 SHEET 4 A12 VAL A 109 PHE A 123 1 O THR A 115 N ARG A 70 SHEET 5 A12 ARG A 91 MET A 104 -1 N ASP A 99 O THR A 114 SHEET 6 A12 ASN A 15 VAL A 23 -1 N VAL A 17 O GLY A 96 SHEET 7 A12 LEU B 14 VAL B 23 -1 O HIS B 18 N ARG A 16 SHEET 8 A12 ARG B 91 GLY B 101 -1 O LEU B 94 N LEU B 19 SHEET 9 A12 GLN B 112 ILE B 122 -1 O THR B 114 N ASP B 99 SHEET 10 A12 LYS B 65 VAL B 73 1 N ARG B 70 O THR B 115 SHEET 11 A12 VAL B 38 GLU B 47 -1 N LEU B 43 O HIS B 69 SHEET 12 A12 VAL B 28 ARG B 30 -1 N VAL B 28 O ILE B 40 SHEET 1 B 6 VAL A 28 LEU A 29 0 SHEET 2 B 6 THR A 39 MET A 48 -1 O ILE A 40 N VAL A 28 SHEET 3 B 6 ASN A 15 VAL A 23 -1 N ARG A 22 O ALA A 44 SHEET 4 B 6 LEU B 14 VAL B 23 -1 O HIS B 18 N ARG A 16 SHEET 5 B 6 VAL B 38 GLU B 47 -1 O ALA B 44 N ARG B 22 SHEET 6 B 6 VAL B 28 ARG B 30 -1 N VAL B 28 O ILE B 40 CRYST1 106.900 106.900 90.240 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009355 0.005401 0.000000 0.00000 SCALE2 0.000000 0.010802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011082 0.00000