data_2DUL # _entry.id 2DUL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DUL pdb_00002dul 10.2210/pdb2dul/pdb RCSB RCSB025861 ? ? WWPDB D_1000025861 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DUL _pdbx_database_status.recvd_initial_deposition_date 2006-07-24 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id Pho001001829.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal Ihsanawati 1 'Shirouzu, M.' 2 'Bessho, Y.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Crystal Structure of tRNA N(2),N(2)-Guanosine Dimethyltransferase Trm1 from Pyrococcus horikoshii' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 383 _citation.page_first 871 _citation.page_last 884 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18789948 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.08.068 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary Ihsanawati 1 ? primary 'Nishimoto, M.' 2 ? primary 'Higashijima, K.' 3 ? primary 'Shirouzu, M.' 4 ? primary 'Grosjean, H.' 5 ? primary 'Bessho, Y.' 6 ? primary 'Yokoyama, S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'N(2),N(2)-dimethylguanosine tRNA methyltransferase' 43010.938 1 2.1.1.32 L1M 'residues 1-378' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 320 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;tRNA(guanine-26,N(2)-N(2)) methyltransferase, tRNA 2,2-dimethylguanosine-26 methyltransferase, tRNA(m(2,2)G26)dimethyltransferase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MELIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDIS EDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGIL GVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKG DETLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPL FYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKRI ; _entity_poly.pdbx_seq_one_letter_code_can ;MELIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDIS EDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGIL GVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKG DETLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPL FYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKRI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier Pho001001829.1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LEU n 1 4 ILE n 1 5 GLU n 1 6 VAL n 1 7 GLN n 1 8 GLU n 1 9 GLY n 1 10 LYS n 1 11 ALA n 1 12 LYS n 1 13 ILE n 1 14 LEU n 1 15 ILE n 1 16 PRO n 1 17 LYS n 1 18 ALA n 1 19 GLU n 1 20 SER n 1 21 ILE n 1 22 TYR n 1 23 ASP n 1 24 SER n 1 25 PRO n 1 26 VAL n 1 27 PHE n 1 28 TYR n 1 29 ASN n 1 30 PRO n 1 31 ARG n 1 32 MET n 1 33 ALA n 1 34 LEU n 1 35 ASN n 1 36 ARG n 1 37 ASP n 1 38 ILE n 1 39 VAL n 1 40 VAL n 1 41 VAL n 1 42 LEU n 1 43 LEU n 1 44 ASN n 1 45 ILE n 1 46 LEU n 1 47 ASN n 1 48 PRO n 1 49 LYS n 1 50 ILE n 1 51 VAL n 1 52 LEU n 1 53 ASP n 1 54 ALA n 1 55 LEU n 1 56 SER n 1 57 ALA n 1 58 THR n 1 59 GLY n 1 60 ILE n 1 61 ARG n 1 62 GLY n 1 63 ILE n 1 64 ARG n 1 65 PHE n 1 66 ALA n 1 67 LEU n 1 68 GLU n 1 69 THR n 1 70 PRO n 1 71 ALA n 1 72 GLU n 1 73 GLU n 1 74 VAL n 1 75 TRP n 1 76 LEU n 1 77 ASN n 1 78 ASP n 1 79 ILE n 1 80 SER n 1 81 GLU n 1 82 ASP n 1 83 ALA n 1 84 TYR n 1 85 GLU n 1 86 LEU n 1 87 MET n 1 88 LYS n 1 89 ARG n 1 90 ASN n 1 91 VAL n 1 92 MET n 1 93 LEU n 1 94 ASN n 1 95 PHE n 1 96 ASP n 1 97 GLY n 1 98 GLU n 1 99 LEU n 1 100 ARG n 1 101 GLU n 1 102 SER n 1 103 LYS n 1 104 GLY n 1 105 ARG n 1 106 ALA n 1 107 ILE n 1 108 LEU n 1 109 LYS n 1 110 GLY n 1 111 GLU n 1 112 LYS n 1 113 THR n 1 114 ILE n 1 115 VAL n 1 116 ILE n 1 117 ASN n 1 118 HIS n 1 119 ASP n 1 120 ASP n 1 121 ALA n 1 122 ASN n 1 123 ARG n 1 124 LEU n 1 125 MET n 1 126 ALA n 1 127 GLU n 1 128 ARG n 1 129 HIS n 1 130 ARG n 1 131 TYR n 1 132 PHE n 1 133 HIS n 1 134 PHE n 1 135 ILE n 1 136 ASP n 1 137 LEU n 1 138 ASP n 1 139 PRO n 1 140 PHE n 1 141 GLY n 1 142 SER n 1 143 PRO n 1 144 MET n 1 145 GLU n 1 146 PHE n 1 147 LEU n 1 148 ASP n 1 149 THR n 1 150 ALA n 1 151 LEU n 1 152 ARG n 1 153 SER n 1 154 ALA n 1 155 LYS n 1 156 ARG n 1 157 ARG n 1 158 GLY n 1 159 ILE n 1 160 LEU n 1 161 GLY n 1 162 VAL n 1 163 THR n 1 164 ALA n 1 165 THR n 1 166 ASP n 1 167 GLY n 1 168 ALA n 1 169 PRO n 1 170 LEU n 1 171 CYS n 1 172 GLY n 1 173 ALA n 1 174 HIS n 1 175 PRO n 1 176 ARG n 1 177 ALA n 1 178 CYS n 1 179 LEU n 1 180 ARG n 1 181 LYS n 1 182 TYR n 1 183 LEU n 1 184 ALA n 1 185 VAL n 1 186 PRO n 1 187 LEU n 1 188 ARG n 1 189 GLY n 1 190 GLU n 1 191 LEU n 1 192 CYS n 1 193 HIS n 1 194 GLU n 1 195 VAL n 1 196 GLY n 1 197 THR n 1 198 ARG n 1 199 ILE n 1 200 LEU n 1 201 VAL n 1 202 GLY n 1 203 VAL n 1 204 ILE n 1 205 ALA n 1 206 ARG n 1 207 TYR n 1 208 ALA n 1 209 ALA n 1 210 LYS n 1 211 TYR n 1 212 ASP n 1 213 LEU n 1 214 GLY n 1 215 ILE n 1 216 ASP n 1 217 VAL n 1 218 ILE n 1 219 LEU n 1 220 ALA n 1 221 TYR n 1 222 TYR n 1 223 LYS n 1 224 ASP n 1 225 HIS n 1 226 TYR n 1 227 PHE n 1 228 ARG n 1 229 ALA n 1 230 PHE n 1 231 VAL n 1 232 LYS n 1 233 LEU n 1 234 LYS n 1 235 ASP n 1 236 GLY n 1 237 ALA n 1 238 ARG n 1 239 LYS n 1 240 GLY n 1 241 ASP n 1 242 GLU n 1 243 THR n 1 244 LEU n 1 245 GLU n 1 246 LYS n 1 247 LEU n 1 248 GLY n 1 249 TYR n 1 250 ILE n 1 251 TYR n 1 252 PHE n 1 253 ASP n 1 254 ASP n 1 255 LYS n 1 256 THR n 1 257 GLY n 1 258 LYS n 1 259 PHE n 1 260 GLU n 1 261 LEU n 1 262 GLU n 1 263 GLN n 1 264 GLY n 1 265 PHE n 1 266 LEU n 1 267 PRO n 1 268 THR n 1 269 ARG n 1 270 PRO n 1 271 ASN n 1 272 ALA n 1 273 TYR n 1 274 GLY n 1 275 PRO n 1 276 VAL n 1 277 TRP n 1 278 LEU n 1 279 GLY n 1 280 PRO n 1 281 LEU n 1 282 LYS n 1 283 ASP n 1 284 GLU n 1 285 LYS n 1 286 ILE n 1 287 VAL n 1 288 SER n 1 289 LYS n 1 290 MET n 1 291 VAL n 1 292 LYS n 1 293 GLU n 1 294 ALA n 1 295 GLU n 1 296 SER n 1 297 LEU n 1 298 SER n 1 299 LEU n 1 300 ALA n 1 301 ARG n 1 302 LYS n 1 303 LYS n 1 304 GLN n 1 305 ALA n 1 306 LEU n 1 307 LYS n 1 308 LEU n 1 309 LEU n 1 310 LYS n 1 311 MET n 1 312 ILE n 1 313 ASP n 1 314 GLN n 1 315 GLU n 1 316 LEU n 1 317 ASP n 1 318 ILE n 1 319 PRO n 1 320 LEU n 1 321 PHE n 1 322 TYR n 1 323 ASP n 1 324 THR n 1 325 HIS n 1 326 ALA n 1 327 ILE n 1 328 GLY n 1 329 ARG n 1 330 ARG n 1 331 LEU n 1 332 LYS n 1 333 ILE n 1 334 GLU n 1 335 THR n 1 336 LYS n 1 337 LYS n 1 338 VAL n 1 339 GLU n 1 340 GLU n 1 341 ILE n 1 342 ILE n 1 343 SER n 1 344 ALA n 1 345 LEU n 1 346 ARG n 1 347 GLU n 1 348 GLN n 1 349 GLY n 1 350 TYR n 1 351 GLU n 1 352 ALA n 1 353 THR n 1 354 ARG n 1 355 THR n 1 356 HIS n 1 357 PHE n 1 358 SER n 1 359 PRO n 1 360 THR n 1 361 GLY n 1 362 ILE n 1 363 LYS n 1 364 THR n 1 365 SER n 1 366 ALA n 1 367 PRO n 1 368 TYR n 1 369 GLU n 1 370 VAL n 1 371 PHE n 1 372 ILE n 1 373 GLU n 1 374 THR n 1 375 ILE n 1 376 LYS n 1 377 ARG n 1 378 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene trm1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 53953 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus (DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 LYS 17 17 ? ? ? A . n A 1 18 ALA 18 18 ? ? ? A . n A 1 19 GLU 19 19 ? ? ? A . n A 1 20 SER 20 20 ? ? ? A . n A 1 21 ILE 21 21 ? ? ? A . n A 1 22 TYR 22 22 ? ? ? A . n A 1 23 ASP 23 23 ? ? ? A . n A 1 24 SER 24 24 ? ? ? A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 MET 32 32 32 MET MET A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 TRP 75 75 75 TRP TRP A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 HIS 118 118 118 HIS HIS A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 MET 125 125 125 MET MET A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 HIS 129 129 129 HIS HIS A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 PRO 139 139 139 PRO PRO A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 MET 144 144 144 MET MET A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 ARG 152 152 152 ARG ARG A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 THR 163 163 163 THR THR A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 THR 165 165 165 THR THR A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 ALA 168 168 168 ALA ALA A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 CYS 171 171 171 CYS CYS A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 HIS 174 174 174 HIS HIS A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 ALA 177 177 177 ALA ALA A . n A 1 178 CYS 178 178 178 CYS CYS A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 LYS 181 181 181 LYS LYS A . n A 1 182 TYR 182 182 182 TYR TYR A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 PRO 186 186 186 PRO PRO A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 CYS 192 192 192 CYS CYS A . n A 1 193 HIS 193 193 193 HIS HIS A . n A 1 194 GLU 194 194 194 GLU GLU A . n A 1 195 VAL 195 195 195 VAL VAL A . n A 1 196 GLY 196 196 196 GLY GLY A . n A 1 197 THR 197 197 197 THR THR A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 GLY 202 202 202 GLY GLY A . n A 1 203 VAL 203 203 203 VAL VAL A . n A 1 204 ILE 204 204 204 ILE ILE A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 TYR 207 207 207 TYR TYR A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 ILE 215 215 215 ILE ILE A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 ILE 218 218 218 ILE ILE A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 TYR 221 221 221 TYR TYR A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 ASP 224 224 224 ASP ASP A . n A 1 225 HIS 225 225 225 HIS HIS A . n A 1 226 TYR 226 226 226 TYR TYR A . n A 1 227 PHE 227 227 227 PHE PHE A . n A 1 228 ARG 228 228 228 ARG ARG A . n A 1 229 ALA 229 229 229 ALA ALA A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 ASP 235 235 235 ASP ASP A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 LYS 239 239 239 LYS LYS A . n A 1 240 GLY 240 240 240 GLY GLY A . n A 1 241 ASP 241 241 241 ASP ASP A . n A 1 242 GLU 242 242 242 GLU GLU A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 LYS 246 246 246 LYS LYS A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 GLY 248 248 248 GLY GLY A . n A 1 249 TYR 249 249 249 TYR TYR A . n A 1 250 ILE 250 250 250 ILE ILE A . n A 1 251 TYR 251 251 251 TYR TYR A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 ASP 254 254 254 ASP ASP A . n A 1 255 LYS 255 255 255 LYS LYS A . n A 1 256 THR 256 256 256 THR THR A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 LYS 258 258 258 LYS LYS A . n A 1 259 PHE 259 259 259 PHE PHE A . n A 1 260 GLU 260 260 260 GLU GLU A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 GLU 262 262 262 GLU GLU A . n A 1 263 GLN 263 263 263 GLN GLN A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 PHE 265 265 265 PHE PHE A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 PRO 267 267 267 PRO PRO A . n A 1 268 THR 268 268 268 THR THR A . n A 1 269 ARG 269 269 269 ARG ARG A . n A 1 270 PRO 270 270 270 PRO PRO A . n A 1 271 ASN 271 271 271 ASN ASN A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 TYR 273 273 273 TYR TYR A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 PRO 275 275 275 PRO PRO A . n A 1 276 VAL 276 276 276 VAL VAL A . n A 1 277 TRP 277 277 277 TRP TRP A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 GLY 279 279 279 GLY GLY A . n A 1 280 PRO 280 280 280 PRO PRO A . n A 1 281 LEU 281 281 281 LEU LEU A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 ASP 283 283 283 ASP ASP A . n A 1 284 GLU 284 284 284 GLU GLU A . n A 1 285 LYS 285 285 285 LYS LYS A . n A 1 286 ILE 286 286 286 ILE ILE A . n A 1 287 VAL 287 287 287 VAL VAL A . n A 1 288 SER 288 288 288 SER SER A . n A 1 289 LYS 289 289 289 LYS LYS A . n A 1 290 MET 290 290 290 MET MET A . n A 1 291 VAL 291 291 291 VAL VAL A . n A 1 292 LYS 292 292 292 LYS LYS A . n A 1 293 GLU 293 293 293 GLU GLU A . n A 1 294 ALA 294 294 294 ALA ALA A . n A 1 295 GLU 295 295 295 GLU GLU A . n A 1 296 SER 296 296 296 SER SER A . n A 1 297 LEU 297 297 297 LEU LEU A . n A 1 298 SER 298 298 298 SER SER A . n A 1 299 LEU 299 299 299 LEU LEU A . n A 1 300 ALA 300 300 300 ALA ALA A . n A 1 301 ARG 301 301 301 ARG ARG A . n A 1 302 LYS 302 302 302 LYS LYS A . n A 1 303 LYS 303 303 303 LYS LYS A . n A 1 304 GLN 304 304 304 GLN GLN A . n A 1 305 ALA 305 305 305 ALA ALA A . n A 1 306 LEU 306 306 306 LEU LEU A . n A 1 307 LYS 307 307 307 LYS LYS A . n A 1 308 LEU 308 308 308 LEU LEU A . n A 1 309 LEU 309 309 309 LEU LEU A . n A 1 310 LYS 310 310 310 LYS LYS A . n A 1 311 MET 311 311 311 MET MET A . n A 1 312 ILE 312 312 312 ILE ILE A . n A 1 313 ASP 313 313 313 ASP ASP A . n A 1 314 GLN 314 314 314 GLN GLN A . n A 1 315 GLU 315 315 315 GLU GLU A . n A 1 316 LEU 316 316 316 LEU LEU A . n A 1 317 ASP 317 317 317 ASP ASP A . n A 1 318 ILE 318 318 318 ILE ILE A . n A 1 319 PRO 319 319 319 PRO PRO A . n A 1 320 LEU 320 320 320 LEU LEU A . n A 1 321 PHE 321 321 321 PHE PHE A . n A 1 322 TYR 322 322 322 TYR TYR A . n A 1 323 ASP 323 323 323 ASP ASP A . n A 1 324 THR 324 324 324 THR THR A . n A 1 325 HIS 325 325 325 HIS HIS A . n A 1 326 ALA 326 326 326 ALA ALA A . n A 1 327 ILE 327 327 327 ILE ILE A . n A 1 328 GLY 328 328 328 GLY GLY A . n A 1 329 ARG 329 329 329 ARG ARG A . n A 1 330 ARG 330 330 330 ARG ARG A . n A 1 331 LEU 331 331 331 LEU LEU A . n A 1 332 LYS 332 332 332 LYS LYS A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 GLU 334 334 334 GLU GLU A . n A 1 335 THR 335 335 335 THR THR A . n A 1 336 LYS 336 336 336 LYS LYS A . n A 1 337 LYS 337 337 337 LYS LYS A . n A 1 338 VAL 338 338 338 VAL VAL A . n A 1 339 GLU 339 339 339 GLU GLU A . n A 1 340 GLU 340 340 340 GLU GLU A . n A 1 341 ILE 341 341 341 ILE ILE A . n A 1 342 ILE 342 342 342 ILE ILE A . n A 1 343 SER 343 343 343 SER SER A . n A 1 344 ALA 344 344 344 ALA ALA A . n A 1 345 LEU 345 345 345 LEU LEU A . n A 1 346 ARG 346 346 346 ARG ARG A . n A 1 347 GLU 347 347 347 GLU GLU A . n A 1 348 GLN 348 348 348 GLN GLN A . n A 1 349 GLY 349 349 349 GLY GLY A . n A 1 350 TYR 350 350 350 TYR TYR A . n A 1 351 GLU 351 351 351 GLU GLU A . n A 1 352 ALA 352 352 352 ALA ALA A . n A 1 353 THR 353 353 353 THR THR A . n A 1 354 ARG 354 354 354 ARG ARG A . n A 1 355 THR 355 355 355 THR THR A . n A 1 356 HIS 356 356 356 HIS HIS A . n A 1 357 PHE 357 357 357 PHE PHE A . n A 1 358 SER 358 358 358 SER SER A . n A 1 359 PRO 359 359 359 PRO PRO A . n A 1 360 THR 360 360 360 THR THR A . n A 1 361 GLY 361 361 361 GLY GLY A . n A 1 362 ILE 362 362 362 ILE ILE A . n A 1 363 LYS 363 363 363 LYS LYS A . n A 1 364 THR 364 364 364 THR THR A . n A 1 365 SER 365 365 365 SER SER A . n A 1 366 ALA 366 366 366 ALA ALA A . n A 1 367 PRO 367 367 367 PRO PRO A . n A 1 368 TYR 368 368 368 TYR TYR A . n A 1 369 GLU 369 369 369 GLU GLU A . n A 1 370 VAL 370 370 370 VAL VAL A . n A 1 371 PHE 371 371 371 PHE PHE A . n A 1 372 ILE 372 372 372 ILE ILE A . n A 1 373 GLU 373 373 373 GLU GLU A . n A 1 374 THR 374 374 374 THR THR A . n A 1 375 ILE 375 375 375 ILE ILE A . n A 1 376 LYS 376 376 376 LYS LYS A . n A 1 377 ARG 377 377 377 ARG ARG A . n A 1 378 ILE 378 378 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 401 1 GOL GOL A . C 3 HOH 1 402 1 HOH HOH A . C 3 HOH 2 403 2 HOH HOH A . C 3 HOH 3 404 3 HOH HOH A . C 3 HOH 4 405 4 HOH HOH A . C 3 HOH 5 406 5 HOH HOH A . C 3 HOH 6 407 6 HOH HOH A . C 3 HOH 7 408 7 HOH HOH A . C 3 HOH 8 409 8 HOH HOH A . C 3 HOH 9 410 9 HOH HOH A . C 3 HOH 10 411 10 HOH HOH A . C 3 HOH 11 412 11 HOH HOH A . C 3 HOH 12 413 12 HOH HOH A . C 3 HOH 13 414 13 HOH HOH A . C 3 HOH 14 415 14 HOH HOH A . C 3 HOH 15 416 15 HOH HOH A . C 3 HOH 16 417 16 HOH HOH A . C 3 HOH 17 418 17 HOH HOH A . C 3 HOH 18 419 18 HOH HOH A . C 3 HOH 19 420 19 HOH HOH A . C 3 HOH 20 421 20 HOH HOH A . C 3 HOH 21 422 21 HOH HOH A . C 3 HOH 22 423 22 HOH HOH A . C 3 HOH 23 424 23 HOH HOH A . C 3 HOH 24 425 24 HOH HOH A . C 3 HOH 25 426 25 HOH HOH A . C 3 HOH 26 427 26 HOH HOH A . C 3 HOH 27 428 27 HOH HOH A . C 3 HOH 28 429 28 HOH HOH A . C 3 HOH 29 430 29 HOH HOH A . C 3 HOH 30 431 30 HOH HOH A . C 3 HOH 31 432 31 HOH HOH A . C 3 HOH 32 433 32 HOH HOH A . C 3 HOH 33 434 33 HOH HOH A . C 3 HOH 34 435 34 HOH HOH A . C 3 HOH 35 436 35 HOH HOH A . C 3 HOH 36 437 36 HOH HOH A . C 3 HOH 37 438 37 HOH HOH A . C 3 HOH 38 439 38 HOH HOH A . C 3 HOH 39 440 39 HOH HOH A . C 3 HOH 40 441 40 HOH HOH A . C 3 HOH 41 442 41 HOH HOH A . C 3 HOH 42 443 42 HOH HOH A . C 3 HOH 43 444 43 HOH HOH A . C 3 HOH 44 445 44 HOH HOH A . C 3 HOH 45 446 45 HOH HOH A . C 3 HOH 46 447 46 HOH HOH A . C 3 HOH 47 448 47 HOH HOH A . C 3 HOH 48 449 48 HOH HOH A . C 3 HOH 49 450 49 HOH HOH A . C 3 HOH 50 451 50 HOH HOH A . C 3 HOH 51 452 51 HOH HOH A . C 3 HOH 52 453 52 HOH HOH A . C 3 HOH 53 454 53 HOH HOH A . C 3 HOH 54 455 54 HOH HOH A . C 3 HOH 55 456 55 HOH HOH A . C 3 HOH 56 457 56 HOH HOH A . C 3 HOH 57 458 57 HOH HOH A . C 3 HOH 58 459 58 HOH HOH A . C 3 HOH 59 460 59 HOH HOH A . C 3 HOH 60 461 60 HOH HOH A . C 3 HOH 61 462 61 HOH HOH A . C 3 HOH 62 463 62 HOH HOH A . C 3 HOH 63 464 63 HOH HOH A . C 3 HOH 64 465 64 HOH HOH A . C 3 HOH 65 466 65 HOH HOH A . C 3 HOH 66 467 66 HOH HOH A . C 3 HOH 67 468 67 HOH HOH A . C 3 HOH 68 469 68 HOH HOH A . C 3 HOH 69 470 69 HOH HOH A . C 3 HOH 70 471 70 HOH HOH A . C 3 HOH 71 472 71 HOH HOH A . C 3 HOH 72 473 72 HOH HOH A . C 3 HOH 73 474 73 HOH HOH A . C 3 HOH 74 475 74 HOH HOH A . C 3 HOH 75 476 75 HOH HOH A . C 3 HOH 76 477 76 HOH HOH A . C 3 HOH 77 478 77 HOH HOH A . C 3 HOH 78 479 78 HOH HOH A . C 3 HOH 79 480 79 HOH HOH A . C 3 HOH 80 481 80 HOH HOH A . C 3 HOH 81 482 81 HOH HOH A . C 3 HOH 82 483 82 HOH HOH A . C 3 HOH 83 484 83 HOH HOH A . C 3 HOH 84 485 84 HOH HOH A . C 3 HOH 85 486 85 HOH HOH A . C 3 HOH 86 487 86 HOH HOH A . C 3 HOH 87 488 87 HOH HOH A . C 3 HOH 88 489 88 HOH HOH A . C 3 HOH 89 490 89 HOH HOH A . C 3 HOH 90 491 90 HOH HOH A . C 3 HOH 91 492 91 HOH HOH A . C 3 HOH 92 493 92 HOH HOH A . C 3 HOH 93 494 93 HOH HOH A . C 3 HOH 94 495 94 HOH HOH A . C 3 HOH 95 496 95 HOH HOH A . C 3 HOH 96 497 96 HOH HOH A . C 3 HOH 97 498 97 HOH HOH A . C 3 HOH 98 499 98 HOH HOH A . C 3 HOH 99 500 99 HOH HOH A . C 3 HOH 100 501 100 HOH HOH A . C 3 HOH 101 502 101 HOH HOH A . C 3 HOH 102 503 102 HOH HOH A . C 3 HOH 103 504 103 HOH HOH A . C 3 HOH 104 505 104 HOH HOH A . C 3 HOH 105 506 105 HOH HOH A . C 3 HOH 106 507 106 HOH HOH A . C 3 HOH 107 508 107 HOH HOH A . C 3 HOH 108 509 108 HOH HOH A . C 3 HOH 109 510 109 HOH HOH A . C 3 HOH 110 511 110 HOH HOH A . C 3 HOH 111 512 111 HOH HOH A . C 3 HOH 112 513 112 HOH HOH A . C 3 HOH 113 514 113 HOH HOH A . C 3 HOH 114 515 114 HOH HOH A . C 3 HOH 115 516 115 HOH HOH A . C 3 HOH 116 517 116 HOH HOH A . C 3 HOH 117 518 117 HOH HOH A . C 3 HOH 118 519 118 HOH HOH A . C 3 HOH 119 520 119 HOH HOH A . C 3 HOH 120 521 120 HOH HOH A . C 3 HOH 121 522 121 HOH HOH A . C 3 HOH 122 523 122 HOH HOH A . C 3 HOH 123 524 123 HOH HOH A . C 3 HOH 124 525 124 HOH HOH A . C 3 HOH 125 526 125 HOH HOH A . C 3 HOH 126 527 126 HOH HOH A . C 3 HOH 127 528 127 HOH HOH A . C 3 HOH 128 529 128 HOH HOH A . C 3 HOH 129 530 129 HOH HOH A . C 3 HOH 130 531 130 HOH HOH A . C 3 HOH 131 532 131 HOH HOH A . C 3 HOH 132 533 132 HOH HOH A . C 3 HOH 133 534 133 HOH HOH A . C 3 HOH 134 535 134 HOH HOH A . C 3 HOH 135 536 135 HOH HOH A . C 3 HOH 136 537 136 HOH HOH A . C 3 HOH 137 538 137 HOH HOH A . C 3 HOH 138 539 138 HOH HOH A . C 3 HOH 139 540 139 HOH HOH A . C 3 HOH 140 541 140 HOH HOH A . C 3 HOH 141 542 141 HOH HOH A . C 3 HOH 142 543 142 HOH HOH A . C 3 HOH 143 544 143 HOH HOH A . C 3 HOH 144 545 144 HOH HOH A . C 3 HOH 145 546 145 HOH HOH A . C 3 HOH 146 547 146 HOH HOH A . C 3 HOH 147 548 147 HOH HOH A . C 3 HOH 148 549 148 HOH HOH A . C 3 HOH 149 550 149 HOH HOH A . C 3 HOH 150 551 150 HOH HOH A . C 3 HOH 151 552 151 HOH HOH A . C 3 HOH 152 553 152 HOH HOH A . C 3 HOH 153 554 153 HOH HOH A . C 3 HOH 154 555 154 HOH HOH A . C 3 HOH 155 556 155 HOH HOH A . C 3 HOH 156 557 156 HOH HOH A . C 3 HOH 157 558 157 HOH HOH A . C 3 HOH 158 559 158 HOH HOH A . C 3 HOH 159 560 159 HOH HOH A . C 3 HOH 160 561 160 HOH HOH A . C 3 HOH 161 562 161 HOH HOH A . C 3 HOH 162 563 162 HOH HOH A . C 3 HOH 163 564 163 HOH HOH A . C 3 HOH 164 565 164 HOH HOH A . C 3 HOH 165 566 165 HOH HOH A . C 3 HOH 166 567 166 HOH HOH A . C 3 HOH 167 568 167 HOH HOH A . C 3 HOH 168 569 168 HOH HOH A . C 3 HOH 169 570 169 HOH HOH A . C 3 HOH 170 571 170 HOH HOH A . C 3 HOH 171 572 171 HOH HOH A . C 3 HOH 172 573 172 HOH HOH A . C 3 HOH 173 574 173 HOH HOH A . C 3 HOH 174 575 174 HOH HOH A . C 3 HOH 175 576 175 HOH HOH A . C 3 HOH 176 577 176 HOH HOH A . C 3 HOH 177 578 177 HOH HOH A . C 3 HOH 178 579 178 HOH HOH A . C 3 HOH 179 580 179 HOH HOH A . C 3 HOH 180 581 180 HOH HOH A . C 3 HOH 181 582 181 HOH HOH A . C 3 HOH 182 583 182 HOH HOH A . C 3 HOH 183 584 183 HOH HOH A . C 3 HOH 184 585 184 HOH HOH A . C 3 HOH 185 586 185 HOH HOH A . C 3 HOH 186 587 186 HOH HOH A . C 3 HOH 187 588 187 HOH HOH A . C 3 HOH 188 589 188 HOH HOH A . C 3 HOH 189 590 189 HOH HOH A . C 3 HOH 190 591 190 HOH HOH A . C 3 HOH 191 592 191 HOH HOH A . C 3 HOH 192 593 192 HOH HOH A . C 3 HOH 193 594 193 HOH HOH A . C 3 HOH 194 595 194 HOH HOH A . C 3 HOH 195 596 195 HOH HOH A . C 3 HOH 196 597 196 HOH HOH A . C 3 HOH 197 598 197 HOH HOH A . C 3 HOH 198 599 198 HOH HOH A . C 3 HOH 199 600 199 HOH HOH A . C 3 HOH 200 601 200 HOH HOH A . C 3 HOH 201 602 201 HOH HOH A . C 3 HOH 202 603 202 HOH HOH A . C 3 HOH 203 604 203 HOH HOH A . C 3 HOH 204 605 204 HOH HOH A . C 3 HOH 205 606 205 HOH HOH A . C 3 HOH 206 607 206 HOH HOH A . C 3 HOH 207 608 207 HOH HOH A . C 3 HOH 208 609 208 HOH HOH A . C 3 HOH 209 610 209 HOH HOH A . C 3 HOH 210 611 210 HOH HOH A . C 3 HOH 211 612 211 HOH HOH A . C 3 HOH 212 613 212 HOH HOH A . C 3 HOH 213 614 213 HOH HOH A . C 3 HOH 214 615 214 HOH HOH A . C 3 HOH 215 616 215 HOH HOH A . C 3 HOH 216 617 216 HOH HOH A . C 3 HOH 217 618 217 HOH HOH A . C 3 HOH 218 619 218 HOH HOH A . C 3 HOH 219 620 219 HOH HOH A . C 3 HOH 220 621 220 HOH HOH A . C 3 HOH 221 622 221 HOH HOH A . C 3 HOH 222 623 222 HOH HOH A . C 3 HOH 223 624 223 HOH HOH A . C 3 HOH 224 625 224 HOH HOH A . C 3 HOH 225 626 225 HOH HOH A . C 3 HOH 226 627 226 HOH HOH A . C 3 HOH 227 628 227 HOH HOH A . C 3 HOH 228 629 228 HOH HOH A . C 3 HOH 229 630 229 HOH HOH A . C 3 HOH 230 631 230 HOH HOH A . C 3 HOH 231 632 231 HOH HOH A . C 3 HOH 232 633 232 HOH HOH A . C 3 HOH 233 634 233 HOH HOH A . C 3 HOH 234 635 234 HOH HOH A . C 3 HOH 235 636 235 HOH HOH A . C 3 HOH 236 637 236 HOH HOH A . C 3 HOH 237 638 237 HOH HOH A . C 3 HOH 238 639 238 HOH HOH A . C 3 HOH 239 640 239 HOH HOH A . C 3 HOH 240 641 240 HOH HOH A . C 3 HOH 241 642 241 HOH HOH A . C 3 HOH 242 643 242 HOH HOH A . C 3 HOH 243 644 243 HOH HOH A . C 3 HOH 244 645 244 HOH HOH A . C 3 HOH 245 646 245 HOH HOH A . C 3 HOH 246 647 246 HOH HOH A . C 3 HOH 247 648 247 HOH HOH A . C 3 HOH 248 649 248 HOH HOH A . C 3 HOH 249 650 249 HOH HOH A . C 3 HOH 250 651 250 HOH HOH A . C 3 HOH 251 652 251 HOH HOH A . C 3 HOH 252 653 252 HOH HOH A . C 3 HOH 253 654 253 HOH HOH A . C 3 HOH 254 655 254 HOH HOH A . C 3 HOH 255 656 255 HOH HOH A . C 3 HOH 256 657 256 HOH HOH A . C 3 HOH 257 658 257 HOH HOH A . C 3 HOH 258 659 258 HOH HOH A . C 3 HOH 259 660 259 HOH HOH A . C 3 HOH 260 661 260 HOH HOH A . C 3 HOH 261 662 261 HOH HOH A . C 3 HOH 262 663 262 HOH HOH A . C 3 HOH 263 664 263 HOH HOH A . C 3 HOH 264 665 264 HOH HOH A . C 3 HOH 265 666 265 HOH HOH A . C 3 HOH 266 667 266 HOH HOH A . C 3 HOH 267 668 267 HOH HOH A . C 3 HOH 268 669 268 HOH HOH A . C 3 HOH 269 670 269 HOH HOH A . C 3 HOH 270 671 270 HOH HOH A . C 3 HOH 271 672 271 HOH HOH A . C 3 HOH 272 673 272 HOH HOH A . C 3 HOH 273 674 273 HOH HOH A . C 3 HOH 274 675 274 HOH HOH A . C 3 HOH 275 676 275 HOH HOH A . C 3 HOH 276 677 276 HOH HOH A . C 3 HOH 277 678 277 HOH HOH A . C 3 HOH 278 679 278 HOH HOH A . C 3 HOH 279 680 279 HOH HOH A . C 3 HOH 280 681 280 HOH HOH A . C 3 HOH 281 682 281 HOH HOH A . C 3 HOH 282 683 282 HOH HOH A . C 3 HOH 283 684 283 HOH HOH A . C 3 HOH 284 685 284 HOH HOH A . C 3 HOH 285 686 285 HOH HOH A . C 3 HOH 286 687 286 HOH HOH A . C 3 HOH 287 688 287 HOH HOH A . C 3 HOH 288 689 288 HOH HOH A . C 3 HOH 289 690 289 HOH HOH A . C 3 HOH 290 691 290 HOH HOH A . C 3 HOH 291 692 291 HOH HOH A . C 3 HOH 292 693 292 HOH HOH A . C 3 HOH 293 694 293 HOH HOH A . C 3 HOH 294 695 294 HOH HOH A . C 3 HOH 295 696 295 HOH HOH A . C 3 HOH 296 697 296 HOH HOH A . C 3 HOH 297 698 297 HOH HOH A . C 3 HOH 298 699 298 HOH HOH A . C 3 HOH 299 700 299 HOH HOH A . C 3 HOH 300 701 300 HOH HOH A . C 3 HOH 301 702 301 HOH HOH A . C 3 HOH 302 703 302 HOH HOH A . C 3 HOH 303 704 303 HOH HOH A . C 3 HOH 304 705 304 HOH HOH A . C 3 HOH 305 706 305 HOH HOH A . C 3 HOH 306 707 306 HOH HOH A . C 3 HOH 307 708 307 HOH HOH A . C 3 HOH 308 709 308 HOH HOH A . C 3 HOH 309 710 309 HOH HOH A . C 3 HOH 310 711 310 HOH HOH A . C 3 HOH 311 712 311 HOH HOH A . C 3 HOH 312 713 312 HOH HOH A . C 3 HOH 313 714 313 HOH HOH A . C 3 HOH 314 715 314 HOH HOH A . C 3 HOH 315 716 315 HOH HOH A . C 3 HOH 316 717 316 HOH HOH A . C 3 HOH 317 718 317 HOH HOH A . C 3 HOH 318 719 318 HOH HOH A . C 3 HOH 319 720 319 HOH HOH A . C 3 HOH 320 721 320 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 SOLVE phasing . ? 4 # _cell.entry_id 2DUL _cell.length_a 74.909 _cell.length_b 109.662 _cell.length_c 96.676 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DUL _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2DUL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pdbx_details '0.1M MES buffer, 2M NaCl, 14% PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'RIGAKU JUPITER 210' 2006-05-18 ? 2 CCD 'RIGAKU JUPITER 210' 2006-04-24 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M Si 'SINGLE WAVELENGTH' x-ray 2 1 M Si MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0 1.0 2 1.0718 1.0 3 1.0712 1.0 4 1.0539 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SPRING-8 BEAMLINE BL26B2' SPring-8 BL26B2 ? 1.0 2 SYNCHROTRON 'SPRING-8 BEAMLINE BL26B2' SPring-8 BL26B2 ? '1.0718, 1.0712, 1.0539' # _reflns.entry_id 2DUL _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 31798 _reflns.number_all ? _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI 35.09 _reflns.B_iso_Wilson_estimate 13.8 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.360 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.09 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 2DUL _refine.ls_number_reflns_obs 31706 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 4066890.57 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.34 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1578 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.7 _refine.aniso_B[1][1] -5.09 _refine.aniso_B[2][2] -10.71 _refine.aniso_B[3][3] 15.79 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.36243 _refine.solvent_model_param_bsol 54.1843 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MAD, MR' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DUL _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.19 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.21 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2938 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 320 _refine_hist.number_atoms_total 3264 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 48.34 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.7 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.78 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 4955 _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.294 _refine_ls_shell.R_factor_R_free_error 0.018 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 260 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 gol.param gol.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2DUL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2DUL _struct.title 'Crystal structure of tRNA G26 methyltransferase Trm1 in apo form from Pyrococcus horikoshii' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DUL _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;tRNA modification enzyme, guanine 26, N(2), N(2)-dimethyltransferase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRM1_PYRHO _struct_ref.pdbx_db_accession O59493 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LELIEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDIS EDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGIL GVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVGVIARYAAKYDLGIDVILAYYKDHYFRAFVKLKDGARKG DETLEKLGYIYFDDKTGKFELEQGFLPTRPNAYGPVWLGPLKDEKIVSKMVKEAESLSLARKKQALKLLKMIDQELDIPL FYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSAPYEVFIETIKRI ; _struct_ref.pdbx_align_begin 4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DUL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 378 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O59493 _struct_ref_seq.db_align_beg 4 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 381 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 378 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2DUL _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O59493 _struct_ref_seq_dif.db_mon_id LEU _struct_ref_seq_dif.pdbx_seq_db_seq_num 4 _struct_ref_seq_dif.details 'initiating methionine' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 3710 ? 2 MORE -21 ? 2 'SSA (A^2)' 28260 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C 2 1,2 A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 48.3380000000 # _struct_biol.id 1 _struct_biol.details ;there are one molecule in the asymmetric unit cell but the molecule have intensively contacts with the neighbouring molecule via 2 fold crystallographic axis. The exact function of the protein requires further experiment. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 29 ? ARG A 31 ? ASN A 29 ARG A 31 5 ? 3 HELX_P HELX_P2 2 MET A 32 ? ASN A 47 ? MET A 32 ASN A 47 1 ? 16 HELX_P HELX_P3 3 GLY A 59 ? THR A 69 ? GLY A 59 THR A 69 1 ? 11 HELX_P HELX_P4 4 SER A 80 ? PHE A 95 ? SER A 80 PHE A 95 1 ? 16 HELX_P HELX_P5 5 ASP A 120 ? ARG A 128 ? ASP A 120 ARG A 128 1 ? 9 HELX_P HELX_P6 6 PRO A 143 ? SER A 153 ? PRO A 143 SER A 153 1 ? 11 HELX_P HELX_P7 7 ASP A 166 ? CYS A 171 ? ASP A 166 CYS A 171 1 ? 6 HELX_P HELX_P8 8 HIS A 174 ? LEU A 183 ? HIS A 174 LEU A 183 1 ? 10 HELX_P HELX_P9 9 LEU A 191 ? LYS A 210 ? LEU A 191 LYS A 210 1 ? 20 HELX_P HELX_P10 10 GLY A 236 ? GLU A 245 ? GLY A 236 GLU A 245 1 ? 10 HELX_P HELX_P11 11 ASP A 283 ? SER A 296 ? ASP A 283 SER A 296 1 ? 14 HELX_P HELX_P12 12 ARG A 301 ? GLU A 315 ? ARG A 301 GLU A 315 1 ? 15 HELX_P HELX_P13 13 THR A 324 ? LYS A 332 ? THR A 324 LYS A 332 1 ? 9 HELX_P HELX_P14 14 LYS A 337 ? GLN A 348 ? LYS A 337 GLN A 348 1 ? 12 HELX_P HELX_P15 15 PRO A 367 ? LYS A 376 ? PRO A 367 LYS A 376 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.40 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 9 ? C ? 3 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 4 ? GLU A 8 ? ILE A 4 GLU A 8 A 2 ALA A 11 ? ILE A 15 ? ALA A 11 ILE A 15 B 1 ARG A 100 ? GLU A 101 ? ARG A 100 GLU A 101 B 2 ARG A 105 ? LYS A 109 ? ARG A 105 LYS A 109 B 3 THR A 113 ? HIS A 118 ? THR A 113 HIS A 118 B 4 GLU A 73 ? ASP A 78 ? GLU A 73 ASP A 78 B 5 ILE A 50 ? ASP A 53 ? ILE A 50 ASP A 53 B 6 PHE A 132 ? LEU A 137 ? PHE A 132 LEU A 137 B 7 ALA A 154 ? ALA A 164 ? ALA A 154 ALA A 164 B 8 TYR A 226 ? ASP A 235 ? TYR A 226 ASP A 235 B 9 LEU A 213 ? LYS A 223 ? LEU A 213 LYS A 223 C 1 PHE A 259 ? GLN A 263 ? PHE A 259 GLN A 263 C 2 LEU A 247 ? PHE A 252 ? LEU A 247 PHE A 252 C 3 TYR A 273 ? TRP A 277 ? TYR A 273 TRP A 277 D 1 TYR A 322 ? ASP A 323 ? TYR A 322 ASP A 323 D 2 SER A 358 ? THR A 364 ? SER A 358 THR A 364 D 3 ALA A 352 ? THR A 355 ? ALA A 352 THR A 355 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 4 ? N ILE A 4 O ILE A 15 ? O ILE A 15 B 1 2 N ARG A 100 ? N ARG A 100 O ILE A 107 ? O ILE A 107 B 2 3 N ALA A 106 ? N ALA A 106 O ILE A 116 ? O ILE A 116 B 3 4 O ASN A 117 ? O ASN A 117 N LEU A 76 ? N LEU A 76 B 4 5 O TRP A 75 ? O TRP A 75 N ASP A 53 ? N ASP A 53 B 5 6 N LEU A 52 ? N LEU A 52 O ASP A 136 ? O ASP A 136 B 6 7 N LEU A 137 ? N LEU A 137 O GLY A 161 ? O GLY A 161 B 7 8 N GLY A 158 ? N GLY A 158 O LEU A 233 ? O LEU A 233 B 8 9 O LYS A 232 ? O LYS A 232 N ASP A 216 ? N ASP A 216 C 1 2 O GLU A 262 ? O GLU A 262 N TYR A 249 ? N TYR A 249 C 2 3 N GLY A 248 ? N GLY A 248 O VAL A 276 ? O VAL A 276 D 1 2 N TYR A 322 ? N TYR A 322 O ILE A 362 ? O ILE A 362 D 2 3 O LYS A 363 ? O LYS A 363 N THR A 353 ? N THR A 353 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 401 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ALA A 220 ? ALA A 220 . ? 1_555 ? 2 AC1 9 LEU A 281 ? LEU A 281 . ? 1_555 ? 3 AC1 9 LYS A 282 ? LYS A 282 . ? 1_555 ? 4 AC1 9 GLU A 315 ? GLU A 315 . ? 1_555 ? 5 AC1 9 LEU A 316 ? LEU A 316 . ? 1_555 ? 6 AC1 9 ASP A 317 ? ASP A 317 . ? 1_555 ? 7 AC1 9 HIS A 356 ? HIS A 356 . ? 1_555 ? 8 AC1 9 PHE A 357 ? PHE A 357 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 433 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 694 ? ? 1_555 O A HOH 694 ? ? 3_655 1.24 2 1 O A HOH 662 ? ? 1_555 O A HOH 662 ? ? 3_555 1.74 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 57 ? ? 58.94 -104.78 2 1 SER A 102 ? ? -161.32 114.57 3 1 LYS A 109 ? ? -103.35 70.81 4 1 ASP A 119 ? ? 178.63 169.83 5 1 ARG A 128 ? ? -106.39 71.98 6 1 HIS A 174 ? ? -116.18 76.43 7 1 LEU A 320 ? ? 64.54 -170.09 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A LYS 17 ? A LYS 17 4 1 Y 1 A ALA 18 ? A ALA 18 5 1 Y 1 A GLU 19 ? A GLU 19 6 1 Y 1 A SER 20 ? A SER 20 7 1 Y 1 A ILE 21 ? A ILE 21 8 1 Y 1 A TYR 22 ? A TYR 22 9 1 Y 1 A ASP 23 ? A ASP 23 10 1 Y 1 A SER 24 ? A SER 24 11 1 Y 1 A ILE 378 ? A ILE 378 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # _atom_sites.entry_id 2DUL _atom_sites.fract_transf_matrix[1][1] 0.013350 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009119 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010344 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_