HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-JUL-06 2DUM TITLE CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN, PH0823 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH0823; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CONSERVED HYPOTHETICAL PROTEIN, PUTATIVE UNIVERSAL PROTEIN A, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,S.KISHISHITA,K.MURAYAMA,M.SHIROUZU,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 13-MAR-24 2DUM 1 REMARK REVDAT 3 13-JUL-11 2DUM 1 VERSN REVDAT 2 24-FEB-09 2DUM 1 VERSN REVDAT 1 24-JAN-07 2DUM 0 JRNL AUTH T.HOSAKA,S.KISHISHITA,K.MURAYAMA,M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN, PH0823 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 20723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 30.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3740 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.5120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4659 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.985 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.389 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.885 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4724 ; 0.035 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6314 ; 2.993 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 9.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;40.470 ;23.843 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1009 ;26.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;23.018 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 722 ; 0.178 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3392 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2680 ; 0.323 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3198 ; 0.359 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.424 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.300 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2956 ; 1.574 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4610 ; 2.723 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1998 ; 3.621 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1704 ; 6.035 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000025862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921, 0.9795, 0.964 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 5.840 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 14.5675 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 30.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34500 REMARK 200 FOR SHELL : 1.869 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PENTAERYTHRITOL ETHOXYLATE (5/4 REMARK 280 PO/OH), PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.54900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.39300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.39300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.32350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.39300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.39300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.77450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.39300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.39300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.32350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.39300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.39300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.77450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.54900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 PHE A 3 REMARK 465 ASP A 52 REMARK 465 GLY A 53 REMARK 465 TYR A 54 REMARK 465 SER A 55 REMARK 465 PHE A 56 REMARK 465 PHE A 57 REMARK 465 TYR A 58 REMARK 465 ASP A 59 REMARK 465 ASN A 60 REMARK 465 ALA A 61 REMARK 465 GLU A 62 REMARK 465 ILE A 63 REMARK 465 LEU A 129 REMARK 465 SER A 130 REMARK 465 GLU A 161 REMARK 465 LEU A 162 REMARK 465 ALA A 163 REMARK 465 LYS A 164 REMARK 465 THR A 165 REMARK 465 LYS A 166 REMARK 465 GLY A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 PHE B 3 REMARK 465 SER B 55 REMARK 465 PHE B 56 REMARK 465 PHE B 57 REMARK 465 TYR B 58 REMARK 465 ASP B 59 REMARK 465 ASN B 60 REMARK 465 ALA B 61 REMARK 465 GLU B 62 REMARK 465 ILE B 63 REMARK 465 GLU B 64 REMARK 465 LEU B 65 REMARK 465 GLY B 127 REMARK 465 LYS B 128 REMARK 465 LEU B 129 REMARK 465 SER B 130 REMARK 465 LEU B 131 REMARK 465 SER B 132 REMARK 465 ASN B 160 REMARK 465 GLU B 161 REMARK 465 LEU B 162 REMARK 465 ALA B 163 REMARK 465 LYS B 164 REMARK 465 THR B 165 REMARK 465 LYS B 166 REMARK 465 GLY B 167 REMARK 465 THR B 168 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 PHE C 3 REMARK 465 GLY C 53 REMARK 465 TYR C 54 REMARK 465 SER C 55 REMARK 465 PHE C 56 REMARK 465 PHE C 57 REMARK 465 TYR C 58 REMARK 465 ASP C 59 REMARK 465 ASN C 60 REMARK 465 ALA C 61 REMARK 465 GLU C 62 REMARK 465 ILE C 63 REMARK 465 GLU C 64 REMARK 465 LEU C 162 REMARK 465 ALA C 163 REMARK 465 LYS C 164 REMARK 465 THR C 165 REMARK 465 LYS C 166 REMARK 465 GLY C 167 REMARK 465 THR C 168 REMARK 465 SER C 169 REMARK 465 GLY C 170 REMARK 465 MET D 1 REMARK 465 ILE D 2 REMARK 465 PHE D 3 REMARK 465 TYR D 54 REMARK 465 SER D 55 REMARK 465 PHE D 56 REMARK 465 PHE D 57 REMARK 465 TYR D 58 REMARK 465 ASP D 59 REMARK 465 ASN D 60 REMARK 465 ALA D 61 REMARK 465 GLU D 62 REMARK 465 ILE D 63 REMARK 465 GLU D 64 REMARK 465 LEU D 129 REMARK 465 SER D 130 REMARK 465 LEU D 131 REMARK 465 SER D 132 REMARK 465 ASN D 160 REMARK 465 GLU D 161 REMARK 465 LEU D 162 REMARK 465 ALA D 163 REMARK 465 LYS D 164 REMARK 465 THR D 165 REMARK 465 LYS D 166 REMARK 465 GLY D 167 REMARK 465 THR D 168 REMARK 465 SER D 169 REMARK 465 GLY D 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 6 CZ ARG A 6 NH1 0.093 REMARK 500 GLU A 35 CG GLU A 35 CD 0.112 REMARK 500 LYS A 83 CD LYS A 83 CE 0.151 REMARK 500 MET B 4 N MET B 4 CA 0.139 REMARK 500 GLU B 32 CG GLU B 32 CD 0.111 REMARK 500 GLU B 35 CB GLU B 35 CG 0.131 REMARK 500 GLU B 35 CG GLU B 35 CD 0.097 REMARK 500 GLU B 35 CD GLU B 35 OE1 0.081 REMARK 500 GLU B 75 CG GLU B 75 CD 0.092 REMARK 500 GLU B 85 CG GLU B 85 CD 0.141 REMARK 500 PHE B 91 CB PHE B 91 CG -0.132 REMARK 500 TYR C 19 CZ TYR C 19 CE2 0.085 REMARK 500 GLU C 32 CG GLU C 32 CD 0.118 REMARK 500 GLU C 49 CB GLU C 49 CG 0.122 REMARK 500 GLU C 49 CG GLU C 49 CD 0.128 REMARK 500 GLU C 85 CB GLU C 85 CG 0.126 REMARK 500 GLU C 85 CG GLU C 85 CD 0.141 REMARK 500 VAL C 140 CB VAL C 140 CG1 -0.134 REMARK 500 LYS D 30 CD LYS D 30 CE 0.154 REMARK 500 GLU D 32 CG GLU D 32 CD 0.092 REMARK 500 GLU D 35 CG GLU D 35 CD 0.106 REMARK 500 GLN D 81 CG GLN D 81 CD 0.140 REMARK 500 GLU D 85 CG GLU D 85 CD 0.125 REMARK 500 GLU D 86 CG GLU D 86 CD 0.099 REMARK 500 VAL D 143 CB VAL D 143 CG2 -0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 LEU A 9 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 ASP A 13 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 LEU A 50 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU A 123 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU A 136 CA - CB - CG ANGL. DEV. = -17.9 DEGREES REMARK 500 LEU A 144 CA - CB - CG ANGL. DEV. = -15.2 DEGREES REMARK 500 MET B 4 CG - SD - CE ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG B 20 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU B 38 CB - CG - CD1 ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP B 43 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 142 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU B 144 CB - CG - CD2 ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG C 89 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS C 94 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG C 101 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG C 126 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 LEU C 129 CA - CB - CG ANGL. DEV. = 20.6 DEGREES REMARK 500 LEU C 131 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 MET D 4 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 PRO D 11 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG D 20 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG D 78 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG D 89 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG D 92 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG D 101 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET D 141 CG - SD - CE ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 66.53 -153.90 REMARK 500 PHE A 14 -3.95 45.74 REMARK 500 GLU A 49 50.77 -40.81 REMARK 500 LEU A 50 42.69 -92.45 REMARK 500 LEU A 65 -115.48 -112.12 REMARK 500 LYS A 66 31.34 -98.20 REMARK 500 ALA A 76 -76.59 -62.40 REMARK 500 SER A 77 -16.53 -41.00 REMARK 500 ARG A 78 -81.18 -63.91 REMARK 500 PRO A 105 -70.14 -35.32 REMARK 500 ASN A 117 70.72 29.91 REMARK 500 SER A 132 152.16 64.59 REMARK 500 HIS A 133 31.21 -82.04 REMARK 500 GLU A 134 -32.56 -130.26 REMARK 500 VAL A 140 -74.32 -59.04 REMARK 500 MET A 141 -48.55 -24.23 REMARK 500 LYS A 149 153.76 -45.55 REMARK 500 LYS A 155 -58.83 -144.59 REMARK 500 GLU A 156 159.17 179.91 REMARK 500 VAL A 157 -165.59 -75.59 REMARK 500 ASP A 158 -121.32 -89.35 REMARK 500 SER B 15 174.80 -59.76 REMARK 500 GLU B 44 94.29 -65.22 REMARK 500 ASP B 67 43.55 -97.80 REMARK 500 ALA B 76 -75.53 -63.28 REMARK 500 ARG B 78 -80.93 -70.72 REMARK 500 LYS B 79 -37.77 -26.12 REMARK 500 GLU B 116 -16.21 -35.76 REMARK 500 ASN B 117 70.67 39.02 REMARK 500 LYS B 155 -105.78 -119.61 REMARK 500 PHE C 14 67.97 32.40 REMARK 500 LEU C 47 43.29 -82.98 REMARK 500 GLU C 48 -73.42 -71.51 REMARK 500 GLU C 49 25.43 -68.45 REMARK 500 LEU C 50 38.30 -88.89 REMARK 500 MET C 51 70.84 -116.08 REMARK 500 ILE C 68 -13.54 -23.58 REMARK 500 LYS C 73 12.19 -59.99 REMARK 500 ARG C 78 -75.24 -39.16 REMARK 500 SER C 125 -81.38 -58.60 REMARK 500 LYS C 128 -84.78 -15.87 REMARK 500 SER C 130 69.65 -56.36 REMARK 500 LEU C 131 -110.89 -110.18 REMARK 500 HIS C 133 -8.87 -59.65 REMARK 500 MET C 141 -34.75 -36.88 REMARK 500 LYS C 155 -104.91 -97.51 REMARK 500 ASP C 158 162.05 -47.78 REMARK 500 GLU C 159 -72.26 -38.43 REMARK 500 LYS D 7 86.79 -158.64 REMARK 500 PHE D 14 4.37 99.95 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 48 GLU A 49 140.50 REMARK 500 GLU C 49 LEU C 50 137.01 REMARK 500 LEU C 50 MET C 51 141.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001000823.1 RELATED DB: TARGETDB DBREF 2DUM A 1 170 UNP O58553 O58553_PYRHO 1 170 DBREF 2DUM B 1 170 UNP O58553 O58553_PYRHO 1 170 DBREF 2DUM C 1 170 UNP O58553 O58553_PYRHO 1 170 DBREF 2DUM D 1 170 UNP O58553 O58553_PYRHO 1 170 SEQRES 1 A 170 MET ILE PHE MET PHE ARG LYS VAL LEU PHE PRO THR ASP SEQRES 2 A 170 PHE SER GLU GLY ALA TYR ARG ALA VAL GLU VAL PHE GLU SEQRES 3 A 170 LYS ARG ASN LYS MET GLU VAL GLY GLU VAL ILE LEU LEU SEQRES 4 A 170 HIS VAL ILE ASP GLU GLY THR LEU GLU GLU LEU MET ASP SEQRES 5 A 170 GLY TYR SER PHE PHE TYR ASP ASN ALA GLU ILE GLU LEU SEQRES 6 A 170 LYS ASP ILE LYS GLU LYS LEU LYS GLU GLU ALA SER ARG SEQRES 7 A 170 LYS LEU GLN GLU LYS ALA GLU GLU VAL LYS ARG ALA PHE SEQRES 8 A 170 ARG ALA LYS ASN VAL ARG THR ILE ILE ARG PHE GLY ILE SEQRES 9 A 170 PRO TRP ASP GLU ILE VAL LYS VAL ALA GLU GLU GLU ASN SEQRES 10 A 170 VAL SER LEU ILE ILE LEU PRO SER ARG GLY LYS LEU SER SEQRES 11 A 170 LEU SER HIS GLU PHE LEU GLY SER THR VAL MET ARG VAL SEQRES 12 A 170 LEU ARG LYS THR LYS LYS PRO VAL LEU ILE ILE LYS GLU SEQRES 13 A 170 VAL ASP GLU ASN GLU LEU ALA LYS THR LYS GLY THR SER SEQRES 14 A 170 GLY SEQRES 1 B 170 MET ILE PHE MET PHE ARG LYS VAL LEU PHE PRO THR ASP SEQRES 2 B 170 PHE SER GLU GLY ALA TYR ARG ALA VAL GLU VAL PHE GLU SEQRES 3 B 170 LYS ARG ASN LYS MET GLU VAL GLY GLU VAL ILE LEU LEU SEQRES 4 B 170 HIS VAL ILE ASP GLU GLY THR LEU GLU GLU LEU MET ASP SEQRES 5 B 170 GLY TYR SER PHE PHE TYR ASP ASN ALA GLU ILE GLU LEU SEQRES 6 B 170 LYS ASP ILE LYS GLU LYS LEU LYS GLU GLU ALA SER ARG SEQRES 7 B 170 LYS LEU GLN GLU LYS ALA GLU GLU VAL LYS ARG ALA PHE SEQRES 8 B 170 ARG ALA LYS ASN VAL ARG THR ILE ILE ARG PHE GLY ILE SEQRES 9 B 170 PRO TRP ASP GLU ILE VAL LYS VAL ALA GLU GLU GLU ASN SEQRES 10 B 170 VAL SER LEU ILE ILE LEU PRO SER ARG GLY LYS LEU SER SEQRES 11 B 170 LEU SER HIS GLU PHE LEU GLY SER THR VAL MET ARG VAL SEQRES 12 B 170 LEU ARG LYS THR LYS LYS PRO VAL LEU ILE ILE LYS GLU SEQRES 13 B 170 VAL ASP GLU ASN GLU LEU ALA LYS THR LYS GLY THR SER SEQRES 14 B 170 GLY SEQRES 1 C 170 MET ILE PHE MET PHE ARG LYS VAL LEU PHE PRO THR ASP SEQRES 2 C 170 PHE SER GLU GLY ALA TYR ARG ALA VAL GLU VAL PHE GLU SEQRES 3 C 170 LYS ARG ASN LYS MET GLU VAL GLY GLU VAL ILE LEU LEU SEQRES 4 C 170 HIS VAL ILE ASP GLU GLY THR LEU GLU GLU LEU MET ASP SEQRES 5 C 170 GLY TYR SER PHE PHE TYR ASP ASN ALA GLU ILE GLU LEU SEQRES 6 C 170 LYS ASP ILE LYS GLU LYS LEU LYS GLU GLU ALA SER ARG SEQRES 7 C 170 LYS LEU GLN GLU LYS ALA GLU GLU VAL LYS ARG ALA PHE SEQRES 8 C 170 ARG ALA LYS ASN VAL ARG THR ILE ILE ARG PHE GLY ILE SEQRES 9 C 170 PRO TRP ASP GLU ILE VAL LYS VAL ALA GLU GLU GLU ASN SEQRES 10 C 170 VAL SER LEU ILE ILE LEU PRO SER ARG GLY LYS LEU SER SEQRES 11 C 170 LEU SER HIS GLU PHE LEU GLY SER THR VAL MET ARG VAL SEQRES 12 C 170 LEU ARG LYS THR LYS LYS PRO VAL LEU ILE ILE LYS GLU SEQRES 13 C 170 VAL ASP GLU ASN GLU LEU ALA LYS THR LYS GLY THR SER SEQRES 14 C 170 GLY SEQRES 1 D 170 MET ILE PHE MET PHE ARG LYS VAL LEU PHE PRO THR ASP SEQRES 2 D 170 PHE SER GLU GLY ALA TYR ARG ALA VAL GLU VAL PHE GLU SEQRES 3 D 170 LYS ARG ASN LYS MET GLU VAL GLY GLU VAL ILE LEU LEU SEQRES 4 D 170 HIS VAL ILE ASP GLU GLY THR LEU GLU GLU LEU MET ASP SEQRES 5 D 170 GLY TYR SER PHE PHE TYR ASP ASN ALA GLU ILE GLU LEU SEQRES 6 D 170 LYS ASP ILE LYS GLU LYS LEU LYS GLU GLU ALA SER ARG SEQRES 7 D 170 LYS LEU GLN GLU LYS ALA GLU GLU VAL LYS ARG ALA PHE SEQRES 8 D 170 ARG ALA LYS ASN VAL ARG THR ILE ILE ARG PHE GLY ILE SEQRES 9 D 170 PRO TRP ASP GLU ILE VAL LYS VAL ALA GLU GLU GLU ASN SEQRES 10 D 170 VAL SER LEU ILE ILE LEU PRO SER ARG GLY LYS LEU SER SEQRES 11 D 170 LEU SER HIS GLU PHE LEU GLY SER THR VAL MET ARG VAL SEQRES 12 D 170 LEU ARG LYS THR LYS LYS PRO VAL LEU ILE ILE LYS GLU SEQRES 13 D 170 VAL ASP GLU ASN GLU LEU ALA LYS THR LYS GLY THR SER SEQRES 14 D 170 GLY FORMUL 5 HOH *28(H2 O) HELIX 1 1 SER A 15 ASN A 29 1 15 HELIX 2 2 GLY A 45 GLU A 49 5 5 HELIX 3 3 ILE A 68 PHE A 91 1 24 HELIX 4 4 ILE A 104 GLU A 116 1 13 HELIX 5 5 GLY A 137 THR A 147 1 11 HELIX 6 6 SER B 15 ASN B 29 1 15 HELIX 7 7 GLY B 45 GLY B 53 1 9 HELIX 8 8 ASP B 67 PHE B 91 1 25 HELIX 9 9 ILE B 104 GLU B 116 1 13 HELIX 10 10 GLY B 137 THR B 147 1 11 HELIX 11 11 SER C 15 ASN C 29 1 15 HELIX 12 12 GLY C 45 LEU C 47 5 3 HELIX 13 13 LYS C 66 LEU C 72 5 7 HELIX 14 14 LYS C 73 PHE C 91 1 19 HELIX 15 15 ILE C 104 ASN C 117 1 14 HELIX 16 16 GLY C 137 THR C 147 1 11 HELIX 17 17 SER D 15 ASN D 29 1 15 HELIX 18 18 GLU D 44 MET D 51 1 8 HELIX 19 19 ILE D 68 GLU D 82 1 15 HELIX 20 20 LYS D 83 PHE D 91 1 9 HELIX 21 21 ILE D 104 GLU D 116 1 13 HELIX 22 22 GLY D 137 THR D 147 1 11 SHEET 1 A10 ASN A 95 GLY A 103 0 SHEET 2 A10 GLU A 35 ASP A 43 1 N VAL A 36 O ASN A 95 SHEET 3 A10 LYS A 7 PRO A 11 1 N PHE A 10 O ILE A 37 SHEET 4 A10 LEU A 120 PRO A 124 1 O ILE A 122 N LEU A 9 SHEET 5 A10 VAL A 151 ILE A 154 1 O LEU A 152 N ILE A 121 SHEET 6 A10 VAL D 151 ILE D 154 -1 O VAL D 151 N ILE A 153 SHEET 7 A10 LEU D 120 PRO D 124 1 N LEU D 123 O ILE D 154 SHEET 8 A10 LYS D 7 PRO D 11 1 N LEU D 9 O ILE D 122 SHEET 9 A10 VAL D 33 ASP D 43 1 O ILE D 37 N PHE D 10 SHEET 10 A10 ALA D 93 GLY D 103 1 O ARG D 101 N ILE D 42 SHEET 1 B10 ALA B 93 GLY B 103 0 SHEET 2 B10 VAL B 33 ASP B 43 1 N LEU B 38 O ARG B 97 SHEET 3 B10 VAL B 8 PRO B 11 1 N VAL B 8 O GLU B 35 SHEET 4 B10 LEU B 120 PRO B 124 1 O LEU B 120 N LEU B 9 SHEET 5 B10 VAL B 151 ILE B 154 1 O LEU B 152 N ILE B 121 SHEET 6 B10 VAL C 151 ILE C 154 -1 O VAL C 151 N ILE B 153 SHEET 7 B10 LEU C 120 PRO C 124 1 N LEU C 123 O ILE C 154 SHEET 8 B10 LYS C 7 PRO C 11 1 N LEU C 9 O ILE C 122 SHEET 9 B10 GLU C 35 ASP C 43 1 O GLU C 35 N VAL C 8 SHEET 10 B10 ASN C 95 GLY C 103 1 O ARG C 97 N LEU C 38 CRYST1 120.786 120.786 127.098 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007868 0.00000