HEADER PROTEIN TRANSPORT 25-JUL-06 2DUP TITLE CRYSTAL STRUCTURE OF VIP36 EXOPLASMIC/LUMENAL DOMAIN, METAL-FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESICULAR INTEGRAL-MEMBRANE PROTEIN VIP36; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 51-301; COMPND 5 SYNONYM: LECTIN, MANNOSE-BINDING 2, VIP36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 STRAIN: FAMILIARIS; SOURCE 6 GENE: LMAN2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PGEX4T-1 KEYWDS BETA SANDWICH, CARBOHYDRATE BINDING PROTEIN, CARGO RECEPTOR, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.SATOH,N.P.COWIESON,R.KATO,S.WAKATSUKI REVDAT 5 25-OCT-23 2DUP 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2DUP 1 VERSN REVDAT 3 24-FEB-09 2DUP 1 VERSN REVDAT 2 30-OCT-07 2DUP 1 JRNL AUTHOR REVDAT 1 24-JUL-07 2DUP 0 JRNL AUTH T.SATOH,N.P.COWIESON,W.HAKAMATA,H.IDEO,K.FUKUSHIMA, JRNL AUTH 2 M.KURIHARA,R.KATO,K.YAMASHITA,S.WAKATSUKI JRNL TITL STRUCTURAL BASIS FOR RECOGNITION OF HIGH MANNOSE TYPE JRNL TITL 2 GLYCOPROTEINS BY MAMMALIAN TRANSPORT LECTIN VIP36 JRNL REF J.BIOL.CHEM. V. 282 28246 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17652092 JRNL DOI 10.1074/JBC.M703064200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 34622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : 2085 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3913 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.81000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4039 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5468 ; 1.336 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.570 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;32.862 ;23.450 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;15.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.569 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3100 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1556 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2629 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.143 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 36 ; 0.203 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2462 ; 0.912 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3872 ; 1.503 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1828 ; 1.740 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1596 ; 2.571 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000025865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36474 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DUO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION: 15% PEG4000, 1.5M REMARK 280 NACL, 0.1M MES (PH6.5), 10MM EDTA, VAPOR DIFFUSION, HANGING DROP, REMARK 280 SOAKING, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 49 REMARK 465 SER A 50 REMARK 465 SER A 51 REMARK 465 PRO A 282 REMARK 465 ASP A 283 REMARK 465 GLU A 284 REMARK 465 GLU A 285 REMARK 465 ASN A 286 REMARK 465 GLY B 49 REMARK 465 SER B 50 REMARK 465 SER B 51 REMARK 465 GLU B 52 REMARK 465 HIS B 280 REMARK 465 THR B 281 REMARK 465 PRO B 282 REMARK 465 ASP B 283 REMARK 465 GLU B 284 REMARK 465 GLU B 285 REMARK 465 ASN B 286 REMARK 465 ILE B 287 REMARK 465 LYS B 300 REMARK 465 SER B 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 80 4.35 -66.35 REMARK 500 LYS A 126 -131.66 37.94 REMARK 500 LEU A 142 -1.27 67.91 REMARK 500 CYS A 239 -54.34 -137.70 REMARK 500 PRO B 63 32.75 -88.54 REMARK 500 SER B 71 6.82 80.58 REMARK 500 LYS B 126 -131.78 57.37 REMARK 500 SER B 220 126.19 -177.23 REMARK 500 ASP B 232 30.97 72.63 REMARK 500 CYS B 239 -62.86 -148.35 REMARK 500 ASP B 264 147.93 177.49 REMARK 500 PHE B 298 53.06 -108.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 162 OD1 REMARK 620 2 ASP A 162 OD2 50.2 REMARK 620 3 TYR A 164 O 107.9 80.7 REMARK 620 4 ASN A 166 OD1 163.0 141.5 88.2 REMARK 620 5 ASP A 193 OD2 96.8 138.9 89.7 77.2 REMARK 620 6 HOH A 328 O 98.9 52.6 80.1 89.3 163.3 REMARK 620 7 HOH A 359 O 94.3 104.8 154.2 71.7 101.0 83.6 REMARK 620 N 1 2 3 4 5 6 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GV9 RELATED DB: PDB REMARK 900 RELATED ID: 1R1Z RELATED DB: PDB REMARK 900 RELATED ID: 2DUO RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CA2+-BOUND FORM REMARK 900 RELATED ID: 2DUQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CA2+/MAN-BOUND FORM REMARK 900 RELATED ID: 2DUR RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CA2+/MAN2-BOUND FORM REMARK 900 RELATED ID: 2DUS RELATED DB: PDB REMARK 900 THE SAME PROTEIN, CA2+/MAN3-BOUND FORM DBREF 2DUP A 51 301 UNP P49256 LMAN2_CANFA 51 301 DBREF 2DUP B 51 301 UNP P49256 LMAN2_CANFA 51 301 SEQADV 2DUP GLY A 49 UNP P49256 EXPRESSION TAG SEQADV 2DUP SER A 50 UNP P49256 EXPRESSION TAG SEQADV 2DUP GLY B 49 UNP P49256 EXPRESSION TAG SEQADV 2DUP SER B 50 UNP P49256 EXPRESSION TAG SEQRES 1 A 253 GLY SER SER GLU HIS LEU LYS ARG GLU HIS SER LEU ILE SEQRES 2 A 253 LYS PRO TYR GLN GLY VAL GLY SER SER SER MET PRO LEU SEQRES 3 A 253 TRP ASP PHE GLN GLY SER THR ILE LEU THR SER GLN TYR SEQRES 4 A 253 VAL ARG LEU THR PRO ASP GLU ARG SER LYS GLU GLY SER SEQRES 5 A 253 ILE TRP ASN HIS GLN PRO CYS PHE LEU LYS ASP TRP GLU SEQRES 6 A 253 MET HIS VAL HIS PHE LYS VAL HIS GLY THR GLY LYS LYS SEQRES 7 A 253 ASN LEU HIS GLY ASP GLY ILE ALA LEU TRP TYR THR ARG SEQRES 8 A 253 ASP ARG LEU VAL PRO GLY PRO VAL PHE GLY SER LYS ASP SEQRES 9 A 253 ASN PHE HIS GLY LEU ALA ILE PHE LEU ASP THR TYR PRO SEQRES 10 A 253 ASN ASP GLU THR THR GLU ARG VAL PHE PRO TYR ILE SER SEQRES 11 A 253 VAL MET VAL ASN ASN GLY SER LEU SER TYR ASP HIS SER SEQRES 12 A 253 LYS ASP GLY ARG TRP THR GLU LEU ALA GLY CYS THR ALA SEQRES 13 A 253 ASP PHE ARG ASN ARG ASP HIS ASP THR PHE LEU ALA VAL SEQRES 14 A 253 ARG TYR SER ARG GLY ARG LEU THR VAL MET THR ASP LEU SEQRES 15 A 253 GLU ASP LYS ASN GLU TRP LYS ASN CYS ILE ASP ILE THR SEQRES 16 A 253 GLY VAL ARG LEU PRO THR GLY TYR TYR PHE GLY ALA SER SEQRES 17 A 253 ALA GLY THR GLY ASP LEU SER ASP ASN HIS ASP ILE ILE SEQRES 18 A 253 SER MET LYS LEU PHE GLN LEU MET VAL GLU HIS THR PRO SEQRES 19 A 253 ASP GLU GLU ASN ILE ASP TRP THR LYS ILE GLU PRO SER SEQRES 20 A 253 VAL ASN PHE LEU LYS SER SEQRES 1 B 253 GLY SER SER GLU HIS LEU LYS ARG GLU HIS SER LEU ILE SEQRES 2 B 253 LYS PRO TYR GLN GLY VAL GLY SER SER SER MET PRO LEU SEQRES 3 B 253 TRP ASP PHE GLN GLY SER THR ILE LEU THR SER GLN TYR SEQRES 4 B 253 VAL ARG LEU THR PRO ASP GLU ARG SER LYS GLU GLY SER SEQRES 5 B 253 ILE TRP ASN HIS GLN PRO CYS PHE LEU LYS ASP TRP GLU SEQRES 6 B 253 MET HIS VAL HIS PHE LYS VAL HIS GLY THR GLY LYS LYS SEQRES 7 B 253 ASN LEU HIS GLY ASP GLY ILE ALA LEU TRP TYR THR ARG SEQRES 8 B 253 ASP ARG LEU VAL PRO GLY PRO VAL PHE GLY SER LYS ASP SEQRES 9 B 253 ASN PHE HIS GLY LEU ALA ILE PHE LEU ASP THR TYR PRO SEQRES 10 B 253 ASN ASP GLU THR THR GLU ARG VAL PHE PRO TYR ILE SER SEQRES 11 B 253 VAL MET VAL ASN ASN GLY SER LEU SER TYR ASP HIS SER SEQRES 12 B 253 LYS ASP GLY ARG TRP THR GLU LEU ALA GLY CYS THR ALA SEQRES 13 B 253 ASP PHE ARG ASN ARG ASP HIS ASP THR PHE LEU ALA VAL SEQRES 14 B 253 ARG TYR SER ARG GLY ARG LEU THR VAL MET THR ASP LEU SEQRES 15 B 253 GLU ASP LYS ASN GLU TRP LYS ASN CYS ILE ASP ILE THR SEQRES 16 B 253 GLY VAL ARG LEU PRO THR GLY TYR TYR PHE GLY ALA SER SEQRES 17 B 253 ALA GLY THR GLY ASP LEU SER ASP ASN HIS ASP ILE ILE SEQRES 18 B 253 SER MET LYS LEU PHE GLN LEU MET VAL GLU HIS THR PRO SEQRES 19 B 253 ASP GLU GLU ASN ILE ASP TRP THR LYS ILE GLU PRO SER SEQRES 20 B 253 VAL ASN PHE LEU LYS SER HET CA A 1 1 HET CL A 2 1 HET CL A 4 1 HET GOL A 7 6 HET GOL A 8 6 HET CL B 3 1 HET CL B 5 1 HET GOL B 6 6 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA CA 2+ FORMUL 4 CL 4(CL 1-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 11 HOH *194(H2 O) HELIX 1 1 ARG A 56 HIS A 58 5 3 HELIX 2 2 HIS A 190 LYS A 192 5 3 HELIX 3 3 ARG A 195 THR A 197 5 3 HELIX 4 4 TRP A 289 LYS A 291 5 3 HELIX 5 5 ARG B 56 HIS B 58 5 3 HELIX 6 6 HIS B 190 LYS B 192 5 3 HELIX 7 7 ARG B 195 THR B 197 5 3 HELIX 8 8 TRP B 289 LYS B 291 5 3 SHEET 1 A 7 TRP A 75 GLY A 79 0 SHEET 2 A 7 LYS A 97 ASN A 103 -1 O SER A 100 N GLN A 78 SHEET 3 A 7 TYR A 252 THR A 259 -1 O PHE A 253 N ASN A 103 SHEET 4 A 7 ASP A 131 THR A 138 -1 N THR A 138 O TYR A 252 SHEET 5 A 7 HIS A 155 ASP A 162 -1 O LEU A 161 N ILE A 133 SHEET 6 A 7 TYR A 176 ASN A 183 -1 O SER A 178 N PHE A 160 SHEET 7 A 7 LEU A 199 THR A 203 -1 O CYS A 202 N ILE A 177 SHEET 1 B 7 THR A 81 LEU A 83 0 SHEET 2 B 7 VAL A 88 THR A 91 -1 O ARG A 89 N ILE A 82 SHEET 3 B 7 ASN A 265 GLN A 275 -1 O ILE A 268 N VAL A 88 SHEET 4 B 7 TRP A 112 HIS A 121 -1 N HIS A 117 O ILE A 269 SHEET 5 B 7 THR A 213 SER A 220 -1 O LEU A 215 N VAL A 116 SHEET 6 B 7 ARG A 223 ASP A 229 -1 O THR A 225 N ARG A 218 SHEET 7 B 7 LYS A 237 THR A 243 -1 O LYS A 237 N THR A 228 SHEET 1 C 2 VAL A 245 ARG A 246 0 SHEET 2 C 2 SER A 295 VAL A 296 -1 O SER A 295 N ARG A 246 SHEET 1 D 7 TRP B 75 GLY B 79 0 SHEET 2 D 7 LYS B 97 ASN B 103 -1 O SER B 100 N GLN B 78 SHEET 3 D 7 TYR B 252 THR B 259 -1 O PHE B 253 N ASN B 103 SHEET 4 D 7 ASP B 131 THR B 138 -1 N THR B 138 O TYR B 252 SHEET 5 D 7 HIS B 155 ASP B 162 -1 O LEU B 161 N ILE B 133 SHEET 6 D 7 TYR B 176 ASN B 183 -1 O SER B 178 N PHE B 160 SHEET 7 D 7 LEU B 199 THR B 203 -1 O CYS B 202 N ILE B 177 SHEET 1 E 7 THR B 81 LEU B 83 0 SHEET 2 E 7 VAL B 88 THR B 91 -1 O ARG B 89 N ILE B 82 SHEET 3 E 7 ASN B 265 GLN B 275 -1 O ILE B 268 N VAL B 88 SHEET 4 E 7 TRP B 112 HIS B 121 -1 N HIS B 117 O ILE B 269 SHEET 5 E 7 THR B 213 SER B 220 -1 O LEU B 215 N VAL B 116 SHEET 6 E 7 ARG B 223 ASP B 229 -1 O THR B 225 N ARG B 218 SHEET 7 E 7 LYS B 237 THR B 243 -1 O LYS B 237 N THR B 228 SHEET 1 F 2 VAL B 245 ARG B 246 0 SHEET 2 F 2 SER B 295 VAL B 296 -1 O SER B 295 N ARG B 246 SSBOND 1 CYS A 202 CYS A 239 1555 1555 2.05 SSBOND 2 CYS B 202 CYS B 239 1555 1555 2.06 LINK CA CA A 1 OD1 ASP A 162 1555 1555 2.46 LINK CA CA A 1 OD2 ASP A 162 1555 1555 2.72 LINK CA CA A 1 O TYR A 164 1555 1555 2.38 LINK CA CA A 1 OD1 ASN A 166 1555 1555 2.94 LINK CA CA A 1 OD2 ASP A 193 1555 1555 2.22 LINK CA CA A 1 O HOH A 328 1555 1555 2.91 LINK CA CA A 1 O HOH A 359 1555 1555 2.51 CISPEP 1 LYS A 62 PRO A 63 0 -5.68 CISPEP 2 GLY A 130 ASP A 131 0 -1.45 CISPEP 3 PHE A 174 PRO A 175 0 0.50 CISPEP 4 LYS B 62 PRO B 63 0 0.79 CISPEP 5 GLY B 130 ASP B 131 0 1.86 CISPEP 6 PHE B 174 PRO B 175 0 -1.22 SITE 1 AC1 6 ASP A 162 TYR A 164 ASN A 166 ASP A 193 SITE 2 AC1 6 HOH A 328 HOH A 359 SITE 1 AC2 3 ARG A 56 ILE A 61 GLN A 65 SITE 1 AC3 3 ARG B 56 ILE B 61 GLY B 66 SITE 1 AC4 3 ARG A 209 ASP A 210 HIS A 211 SITE 1 AC5 3 ARG B 209 ASP B 210 HIS B 211 SITE 1 AC6 5 ASP B 131 TYR B 164 GLY B 260 ASP B 261 SITE 2 AC6 5 LEU B 262 SITE 1 AC7 7 ASP A 131 TYR A 164 ASN A 166 GLY A 260 SITE 2 AC7 7 ASP A 261 LEU A 262 LEU B 128 SITE 1 AC8 5 VAL A 181 LEU A 186 THR A 197 LEU A 199 SITE 2 AC8 5 ARG A 223 CRYST1 171.000 45.200 117.100 90.00 132.60 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005848 0.000000 0.005377 0.00000 SCALE2 0.000000 0.022124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011601 0.00000