HEADER HYDROLASE 31-JUL-06 2DVN TITLE STRUCTURE OF PH1917 PROTEIN WITH THE COMPLEX OF IMP FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH1917; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NTPASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 CODON PLUS (DE3)-RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS IMP, NTPASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.K.LOKANATH,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 25-OCT-23 2DVN 1 REMARK REVDAT 4 13-JUL-11 2DVN 1 VERSN REVDAT 3 24-FEB-09 2DVN 1 VERSN REVDAT 2 05-FEB-08 2DVN 1 JRNL REVDAT 1 04-SEP-07 2DVN 0 JRNL AUTH N.K.LOKANATH,K.J.PAMPA,K.TAKIO,N.KUNISHIMA JRNL TITL STRUCTURES OF DIMERIC NONSTANDARD NUCLEOTIDE TRIPHOSPHATE JRNL TITL 2 PYROPHOSPHATASE FROM PYROCOCCUS HORIKOSHII OT3: FUNCTIONAL JRNL TITL 3 SIGNIFICANCE OF INTERPROTOMER CONFORMATIONAL CHANGES JRNL REF J.MOL.BIOL. V. 375 1013 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18062990 JRNL DOI 10.1016/J.JMB.2007.11.018 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2224547.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 70170 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3577 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10618 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE : 0.2020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 596 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : 1.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.09 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.960 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.500 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.880 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.810 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 50.58 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LIG.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : LIG.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000025898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1V7R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, SODIUM ACETATE, PH REMARK 280 4.6, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.18350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.14750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.14750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.59175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.14750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.14750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.77525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.14750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.14750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.59175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.14750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.14750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.77525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.18350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1667 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1668 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1671 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 52 NE1 TRP A 52 CE2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 87 -73.51 -107.76 REMARK 500 ASN A 183 -46.33 -136.55 REMARK 500 THR B 87 -73.61 -102.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMP A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMP B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1431 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1432 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1433 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DVO RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THE COMPLEX OF ITP REMARK 900 RELATED ID: 2DVP RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT LIGANDS REMARK 900 RELATED ID: PHO001001917.4 RELATED DB: TARGETDB DBREF 2DVN A 1 186 UNP O59580 O59580_PYRHO 1 186 DBREF 2DVN B 1 186 UNP O59580 O59580_PYRHO 1 186 SEQRES 1 A 186 MET LYS ILE PHE PHE ILE THR SER ASN PRO GLY LYS VAL SEQRES 2 A 186 ARG GLU VAL ALA ASN PHE LEU GLY THR PHE GLY ILE GLU SEQRES 3 A 186 ILE VAL GLN LEU LYS HIS GLU TYR PRO GLU ILE GLN ALA SEQRES 4 A 186 GLU LYS LEU GLU ASP VAL VAL ASP PHE GLY ILE SER TRP SEQRES 5 A 186 LEU LYS GLY LYS VAL PRO GLU PRO PHE MET ILE GLU ASP SEQRES 6 A 186 SER GLY LEU PHE ILE GLU SER LEU LYS GLY PHE PRO GLY SEQRES 7 A 186 VAL TYR SER SER TYR VAL TYR ARG THR ILE GLY LEU GLU SEQRES 8 A 186 GLY ILE LEU LYS LEU MET GLU GLY ALA GLU ASP ARG ARG SEQRES 9 A 186 ALA TYR PHE LYS SER VAL ILE GLY PHE TYR ILE ASP GLY SEQRES 10 A 186 LYS ALA TYR LYS PHE SER GLY VAL THR TRP GLY ARG ILE SEQRES 11 A 186 SER ASN GLU LYS ARG GLY THR HIS GLY PHE GLY TYR ASP SEQRES 12 A 186 PRO ILE PHE ILE PRO GLU GLY SER GLU LYS THR PHE ALA SEQRES 13 A 186 GLU MET THR ILE GLU GLU LYS ASN ALA LEU SER HIS ARG SEQRES 14 A 186 GLY LYS ALA LEU LYS ALA PHE PHE GLU TRP LEU LYS VAL SEQRES 15 A 186 ASN LEU LYS TYR SEQRES 1 B 186 MET LYS ILE PHE PHE ILE THR SER ASN PRO GLY LYS VAL SEQRES 2 B 186 ARG GLU VAL ALA ASN PHE LEU GLY THR PHE GLY ILE GLU SEQRES 3 B 186 ILE VAL GLN LEU LYS HIS GLU TYR PRO GLU ILE GLN ALA SEQRES 4 B 186 GLU LYS LEU GLU ASP VAL VAL ASP PHE GLY ILE SER TRP SEQRES 5 B 186 LEU LYS GLY LYS VAL PRO GLU PRO PHE MET ILE GLU ASP SEQRES 6 B 186 SER GLY LEU PHE ILE GLU SER LEU LYS GLY PHE PRO GLY SEQRES 7 B 186 VAL TYR SER SER TYR VAL TYR ARG THR ILE GLY LEU GLU SEQRES 8 B 186 GLY ILE LEU LYS LEU MET GLU GLY ALA GLU ASP ARG ARG SEQRES 9 B 186 ALA TYR PHE LYS SER VAL ILE GLY PHE TYR ILE ASP GLY SEQRES 10 B 186 LYS ALA TYR LYS PHE SER GLY VAL THR TRP GLY ARG ILE SEQRES 11 B 186 SER ASN GLU LYS ARG GLY THR HIS GLY PHE GLY TYR ASP SEQRES 12 B 186 PRO ILE PHE ILE PRO GLU GLY SER GLU LYS THR PHE ALA SEQRES 13 B 186 GLU MET THR ILE GLU GLU LYS ASN ALA LEU SER HIS ARG SEQRES 14 B 186 GLY LYS ALA LEU LYS ALA PHE PHE GLU TRP LEU LYS VAL SEQRES 15 B 186 ASN LEU LYS TYR HET SO4 A1202 5 HET SO4 A1203 5 HET SO4 A1204 5 HET SO4 A1207 5 HET SO4 A1208 5 HET SO4 A1211 5 HET SO4 A1212 5 HET SO4 A1213 5 HET SO4 A1214 5 HET IMP A1301 23 HET GOL A1431 6 HET GOL A1433 6 HET SO4 B1205 5 HET SO4 B1206 5 HET SO4 B1209 5 HET SO4 B1210 5 HET IMP B1302 23 HET GOL B1432 6 HETNAM SO4 SULFATE ION HETNAM IMP INOSINIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 13(O4 S 2-) FORMUL 12 IMP 2(C10 H13 N4 O8 P) FORMUL 13 GOL 3(C3 H8 O3) FORMUL 21 HOH *425(H2 O) HELIX 1 1 ASN A 9 THR A 22 1 14 HELIX 2 2 LYS A 41 LYS A 54 1 14 HELIX 3 3 SER A 72 LYS A 74 5 3 HELIX 4 4 PRO A 77 VAL A 79 5 3 HELIX 5 5 TYR A 80 ILE A 88 1 9 HELIX 6 6 ILE A 88 MET A 97 1 10 HELIX 7 7 TYR A 142 PRO A 144 5 3 HELIX 8 8 THR A 154 MET A 158 5 5 HELIX 9 9 THR A 159 SER A 167 1 9 HELIX 10 10 SER A 167 VAL A 182 1 16 HELIX 11 11 ASN B 9 THR B 22 1 14 HELIX 12 12 LYS B 41 LYS B 54 1 14 HELIX 13 13 SER B 72 LYS B 74 5 3 HELIX 14 14 PRO B 77 VAL B 79 5 3 HELIX 15 15 TYR B 80 ILE B 88 1 9 HELIX 16 16 ILE B 88 MET B 97 1 10 HELIX 17 17 TYR B 142 PRO B 144 5 3 HELIX 18 18 THR B 154 MET B 158 5 5 HELIX 19 19 THR B 159 ALA B 165 1 7 HELIX 20 20 SER B 167 LEU B 184 1 18 SHEET 1 A 6 GLU A 26 LEU A 30 0 SHEET 2 A 6 LYS A 2 ILE A 6 1 N ILE A 3 O GLU A 26 SHEET 3 A 6 PHE A 61 ILE A 70 1 O MET A 62 N PHE A 4 SHEET 4 A 6 ARG A 104 ILE A 115 -1 O TYR A 106 N PHE A 69 SHEET 5 A 6 LYS A 118 ILE A 130 -1 O PHE A 122 N ILE A 111 SHEET 6 A 6 PHE A 146 PRO A 148 -1 O ILE A 147 N ARG A 129 SHEET 1 B 6 GLU B 26 LEU B 30 0 SHEET 2 B 6 LYS B 2 ILE B 6 1 N ILE B 3 O GLU B 26 SHEET 3 B 6 PHE B 61 ILE B 70 1 O MET B 62 N PHE B 4 SHEET 4 B 6 ARG B 104 ILE B 115 -1 O TYR B 106 N PHE B 69 SHEET 5 B 6 LYS B 118 ILE B 130 -1 O PHE B 122 N ILE B 111 SHEET 6 B 6 PHE B 146 PRO B 148 -1 O ILE B 147 N ARG B 129 CISPEP 1 GLU A 59 PRO A 60 0 -0.22 CISPEP 2 PHE A 76 PRO A 77 0 -0.01 CISPEP 3 GLU B 59 PRO B 60 0 -0.21 CISPEP 4 PHE B 76 PRO B 77 0 -1.00 SITE 1 AC1 8 SER A 82 ARG A 86 IMP A1301 HOH A1471 SITE 2 AC1 8 HOH A1498 HOH A1564 HOH A1573 HOH A1578 SITE 1 AC2 14 THR A 7 SER A 8 ASN A 9 LYS A 12 SITE 2 AC2 14 TYR A 34 GLU A 36 GLU A 64 IMP A1301 SITE 3 AC2 14 HOH A1436 HOH A1458 HOH A1471 HOH A1486 SITE 4 AC2 14 HOH A1573 HOH A1643 SITE 1 AC3 6 LYS A 41 TYR A 106 LYS A 108 LYS A 118 SITE 2 AC3 6 HOH A1447 HOH A1570 SITE 1 AC4 6 TYR A 85 PHE A 140 GLY A 141 HOH A1506 SITE 2 AC4 6 HOH A1545 HOH A1639 SITE 1 AC5 10 ARG A 14 HIS A 138 THR A 159 ILE A 160 SITE 2 AC5 10 GOL A1431 HOH A1444 HOH A1589 TRP B 179 SITE 3 AC5 10 ASN B 183 HOH B1445 SITE 1 AC6 7 GLY A 89 LEU A 90 GLU A 91 LYS A 134 SITE 2 AC6 7 HOH A1534 HOH A1624 HOH A1664 SITE 1 AC7 7 ARG A 129 SER A 131 ASN A 132 ARG A 135 SITE 2 AC7 7 HOH A1500 HOH A1552 HOH A1641 SITE 1 AC8 5 ASN A 164 LYS A 174 HOH A1445 HOH A1528 SITE 2 AC8 5 HOH A1652 SITE 1 AC9 4 HIS A 32 TRP A 52 LYS A 56 HOH A1659 SITE 1 BC1 8 GLY B 89 LEU B 90 GLU B 91 LYS B 134 SITE 2 BC1 8 HOH B1506 HOH B1507 HOH B1519 HOH B1594 SITE 1 BC2 5 SER B 72 GLY B 99 ALA B 100 GLU B 101 SITE 2 BC2 5 ASP B 102 SITE 1 BC3 4 TYR B 85 PHE B 140 GLY B 141 HOH B1501 SITE 1 BC4 4 SER B 151 GLU B 152 LYS B 153 HOH B1615 SITE 1 BC5 22 LYS A 12 GLU A 36 GLU A 64 ASP A 65 SITE 2 BC5 22 SER A 66 SER A 81 SER A 82 PHE A 107 SITE 3 BC5 22 PHE A 140 GLY A 141 TYR A 142 ASP A 143 SITE 4 BC5 22 LYS A 163 HIS A 168 ARG A 169 SO4 A1202 SITE 5 BC5 22 SO4 A1203 HOH A1438 HOH A1458 HOH A1493 SITE 6 BC5 22 HOH A1498 HOH A1564 SITE 1 BC6 16 LYS B 12 GLU B 64 ASP B 65 SER B 66 SITE 2 BC6 16 SER B 81 SER B 82 PHE B 107 PHE B 140 SITE 3 BC6 16 TYR B 142 ASP B 143 LYS B 163 HIS B 168 SITE 4 BC6 16 ARG B 169 HOH B1511 HOH B1586 HOH B1593 SITE 1 BC7 7 HIS A 138 GLY A 139 SO4 A1208 HOH A1451 SITE 2 BC7 7 HOH A1469 HOH A1557 GLU B 178 SITE 1 BC8 7 THR B 7 SER B 8 ASN B 9 LYS B 12 SITE 2 BC8 7 GLU B 36 HOH B1440 HOH B1516 SITE 1 BC9 5 VAL A 125 LYS A 171 LYS A 181 HOH A1565 SITE 2 BC9 5 HOH A1672 CRYST1 80.295 80.295 162.367 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012454 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006159 0.00000