data_2DWK # _entry.id 2DWK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DWK pdb_00002dwk 10.2210/pdb2dwk/pdb RCSB RCSB025931 ? ? WWPDB D_1000025931 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-29 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_entry_details 5 4 'Structure model' pdbx_modification_feature 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2006-08-29 _pdbx_database_PDB_obs_spr.pdb_id 2DWK _pdbx_database_PDB_obs_spr.replace_pdb_id 1WUS _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DWK _pdbx_database_status.recvd_initial_deposition_date 2006-08-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2CXF 'the same protein in C2 space group' unspecified PDB 2CXL 'the same protein in I422 space group' unspecified PDB 2DWG 'the same protein in P2(1)P2(1)P2(1) space group' unspecified TargetDB mmk001003772.1 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kukimoto-Niino, M.' 1 'Murayama, K.' 2 'Shirouzu, M.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Crystal Structure of the RUN Domain of the RAP2-interacting Protein x' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 31843 _citation.page_last 31853 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16928684 _citation.pdbx_database_id_DOI 10.1074/jbc.M604960200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kukimoto-Niino, M.' 1 ? primary 'Takagi, T.' 2 ? primary 'Akasaka, R.' 3 ? primary 'Murayama, K.' 4 ? primary 'Uchikubo-Kamo, T.' 5 ? primary 'Terada, T.' 6 ? primary 'Inoue, M.' 7 ? primary 'Watanabe, S.' 8 ? primary 'Tanaka, A.' 9 ? primary 'Hayashizaki, Y.' 10 ? primary 'Kigawa, T.' 11 ? primary 'Shirouzu, M.' 12 ? primary 'Yokoyama, S.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein RUFY3' 20254.117 1 ? ? 'RUN domain' ? 2 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rap2-interacting protein x, RIPx' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSGSSG(MSE)ANER(MSE)NL(MSE)N(MSE)AKLSIKGLIESALNLGRTLDSDYAPLQQFFVV(MSE)EHCLKHGLK AKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPVGRGRAWLRLAL(MSE)QKKLSEY(MSE)KALINKKEL LSEFYEVNAL(MSE)(MSE)EEEGAIIAGLLVGLNVIDANFC(MSE)KGEDLDSQVGVID ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVE KLVPEAAEITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEVNALMMEEEGAIIAGLLVGLNV IDANFCMKGEDLDSQVGVID ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmk001003772.1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MSE n 1 9 ALA n 1 10 ASN n 1 11 GLU n 1 12 ARG n 1 13 MSE n 1 14 ASN n 1 15 LEU n 1 16 MSE n 1 17 ASN n 1 18 MSE n 1 19 ALA n 1 20 LYS n 1 21 LEU n 1 22 SER n 1 23 ILE n 1 24 LYS n 1 25 GLY n 1 26 LEU n 1 27 ILE n 1 28 GLU n 1 29 SER n 1 30 ALA n 1 31 LEU n 1 32 ASN n 1 33 LEU n 1 34 GLY n 1 35 ARG n 1 36 THR n 1 37 LEU n 1 38 ASP n 1 39 SER n 1 40 ASP n 1 41 TYR n 1 42 ALA n 1 43 PRO n 1 44 LEU n 1 45 GLN n 1 46 GLN n 1 47 PHE n 1 48 PHE n 1 49 VAL n 1 50 VAL n 1 51 MSE n 1 52 GLU n 1 53 HIS n 1 54 CYS n 1 55 LEU n 1 56 LYS n 1 57 HIS n 1 58 GLY n 1 59 LEU n 1 60 LYS n 1 61 ALA n 1 62 LYS n 1 63 LYS n 1 64 THR n 1 65 PHE n 1 66 LEU n 1 67 GLY n 1 68 GLN n 1 69 ASN n 1 70 LYS n 1 71 SER n 1 72 PHE n 1 73 TRP n 1 74 GLY n 1 75 PRO n 1 76 LEU n 1 77 GLU n 1 78 LEU n 1 79 VAL n 1 80 GLU n 1 81 LYS n 1 82 LEU n 1 83 VAL n 1 84 PRO n 1 85 GLU n 1 86 ALA n 1 87 ALA n 1 88 GLU n 1 89 ILE n 1 90 THR n 1 91 ALA n 1 92 SER n 1 93 VAL n 1 94 LYS n 1 95 ASP n 1 96 LEU n 1 97 PRO n 1 98 GLY n 1 99 LEU n 1 100 LYS n 1 101 THR n 1 102 PRO n 1 103 VAL n 1 104 GLY n 1 105 ARG n 1 106 GLY n 1 107 ARG n 1 108 ALA n 1 109 TRP n 1 110 LEU n 1 111 ARG n 1 112 LEU n 1 113 ALA n 1 114 LEU n 1 115 MSE n 1 116 GLN n 1 117 LYS n 1 118 LYS n 1 119 LEU n 1 120 SER n 1 121 GLU n 1 122 TYR n 1 123 MSE n 1 124 LYS n 1 125 ALA n 1 126 LEU n 1 127 ILE n 1 128 ASN n 1 129 LYS n 1 130 LYS n 1 131 GLU n 1 132 LEU n 1 133 LEU n 1 134 SER n 1 135 GLU n 1 136 PHE n 1 137 TYR n 1 138 GLU n 1 139 VAL n 1 140 ASN n 1 141 ALA n 1 142 LEU n 1 143 MSE n 1 144 MSE n 1 145 GLU n 1 146 GLU n 1 147 GLU n 1 148 GLY n 1 149 ALA n 1 150 ILE n 1 151 ILE n 1 152 ALA n 1 153 GLY n 1 154 LEU n 1 155 LEU n 1 156 VAL n 1 157 GLY n 1 158 LEU n 1 159 ASN n 1 160 VAL n 1 161 ILE n 1 162 ASP n 1 163 ALA n 1 164 ASN n 1 165 PHE n 1 166 CYS n 1 167 MSE n 1 168 LYS n 1 169 GLY n 1 170 GLU n 1 171 ASP n 1 172 LEU n 1 173 ASP n 1 174 SER n 1 175 GLN n 1 176 VAL n 1 177 GLY n 1 178 VAL n 1 179 ILE n 1 180 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Rufy3, D5Bwg0860e, Ripx' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PK011025-09 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell free protein synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 76 ? ? ? A . n A 1 2 SER 2 77 ? ? ? A . n A 1 3 SER 3 78 ? ? ? A . n A 1 4 GLY 4 79 ? ? ? A . n A 1 5 SER 5 80 ? ? ? A . n A 1 6 SER 6 81 ? ? ? A . n A 1 7 GLY 7 82 ? ? ? A . n A 1 8 MSE 8 83 83 MSE MSE A . n A 1 9 ALA 9 84 84 ALA ALA A . n A 1 10 ASN 10 85 85 ASN ASN A . n A 1 11 GLU 11 86 86 GLU GLU A . n A 1 12 ARG 12 87 87 ARG ARG A . n A 1 13 MSE 13 88 88 MSE MSE A . n A 1 14 ASN 14 89 89 ASN ASN A . n A 1 15 LEU 15 90 90 LEU LEU A . n A 1 16 MSE 16 91 91 MSE MSE A . n A 1 17 ASN 17 92 92 ASN ASN A . n A 1 18 MSE 18 93 93 MSE MSE A . n A 1 19 ALA 19 94 94 ALA ALA A . n A 1 20 LYS 20 95 95 LYS LYS A . n A 1 21 LEU 21 96 96 LEU LEU A . n A 1 22 SER 22 97 97 SER SER A . n A 1 23 ILE 23 98 98 ILE ILE A . n A 1 24 LYS 24 99 99 LYS LYS A . n A 1 25 GLY 25 100 100 GLY GLY A . n A 1 26 LEU 26 101 101 LEU LEU A . n A 1 27 ILE 27 102 102 ILE ILE A . n A 1 28 GLU 28 103 103 GLU GLU A . n A 1 29 SER 29 104 104 SER SER A . n A 1 30 ALA 30 105 105 ALA ALA A . n A 1 31 LEU 31 106 106 LEU LEU A . n A 1 32 ASN 32 107 107 ASN ASN A . n A 1 33 LEU 33 108 108 LEU LEU A . n A 1 34 GLY 34 109 109 GLY GLY A . n A 1 35 ARG 35 110 110 ARG ARG A . n A 1 36 THR 36 111 111 THR THR A . n A 1 37 LEU 37 112 112 LEU LEU A . n A 1 38 ASP 38 113 113 ASP ASP A . n A 1 39 SER 39 114 114 SER SER A . n A 1 40 ASP 40 115 115 ASP ASP A . n A 1 41 TYR 41 116 116 TYR TYR A . n A 1 42 ALA 42 117 117 ALA ALA A . n A 1 43 PRO 43 118 118 PRO PRO A . n A 1 44 LEU 44 119 119 LEU LEU A . n A 1 45 GLN 45 120 120 GLN GLN A . n A 1 46 GLN 46 121 121 GLN GLN A . n A 1 47 PHE 47 122 122 PHE PHE A . n A 1 48 PHE 48 123 123 PHE PHE A . n A 1 49 VAL 49 124 124 VAL VAL A . n A 1 50 VAL 50 125 125 VAL VAL A . n A 1 51 MSE 51 126 126 MSE MSE A . n A 1 52 GLU 52 127 127 GLU GLU A . n A 1 53 HIS 53 128 128 HIS HIS A . n A 1 54 CYS 54 129 129 CYS CYS A . n A 1 55 LEU 55 130 130 LEU LEU A . n A 1 56 LYS 56 131 131 LYS LYS A . n A 1 57 HIS 57 132 132 HIS HIS A . n A 1 58 GLY 58 133 133 GLY GLY A . n A 1 59 LEU 59 134 134 LEU LEU A . n A 1 60 LYS 60 135 135 LYS LYS A . n A 1 61 ALA 61 136 136 ALA ALA A . n A 1 62 LYS 62 137 ? ? ? A . n A 1 63 LYS 63 138 ? ? ? A . n A 1 64 THR 64 139 ? ? ? A . n A 1 65 PHE 65 140 ? ? ? A . n A 1 66 LEU 66 141 ? ? ? A . n A 1 67 GLY 67 142 ? ? ? A . n A 1 68 GLN 68 143 ? ? ? A . n A 1 69 ASN 69 144 144 ASN ASN A . n A 1 70 LYS 70 145 145 LYS LYS A . n A 1 71 SER 71 146 146 SER SER A . n A 1 72 PHE 72 147 147 PHE PHE A . n A 1 73 TRP 73 148 148 TRP TRP A . n A 1 74 GLY 74 149 149 GLY GLY A . n A 1 75 PRO 75 150 150 PRO PRO A . n A 1 76 LEU 76 151 151 LEU LEU A . n A 1 77 GLU 77 152 152 GLU GLU A . n A 1 78 LEU 78 153 153 LEU LEU A . n A 1 79 VAL 79 154 154 VAL VAL A . n A 1 80 GLU 80 155 155 GLU GLU A . n A 1 81 LYS 81 156 156 LYS LYS A . n A 1 82 LEU 82 157 157 LEU LEU A . n A 1 83 VAL 83 158 158 VAL VAL A . n A 1 84 PRO 84 159 159 PRO PRO A . n A 1 85 GLU 85 160 160 GLU GLU A . n A 1 86 ALA 86 161 161 ALA ALA A . n A 1 87 ALA 87 162 162 ALA ALA A . n A 1 88 GLU 88 163 163 GLU GLU A . n A 1 89 ILE 89 164 164 ILE ILE A . n A 1 90 THR 90 165 165 THR THR A . n A 1 91 ALA 91 166 166 ALA ALA A . n A 1 92 SER 92 167 167 SER SER A . n A 1 93 VAL 93 168 168 VAL VAL A . n A 1 94 LYS 94 169 169 LYS LYS A . n A 1 95 ASP 95 170 170 ASP ASP A . n A 1 96 LEU 96 171 171 LEU LEU A . n A 1 97 PRO 97 172 172 PRO PRO A . n A 1 98 GLY 98 173 173 GLY GLY A . n A 1 99 LEU 99 174 174 LEU LEU A . n A 1 100 LYS 100 175 175 LYS LYS A . n A 1 101 THR 101 176 176 THR THR A . n A 1 102 PRO 102 177 177 PRO PRO A . n A 1 103 VAL 103 178 178 VAL VAL A . n A 1 104 GLY 104 179 179 GLY GLY A . n A 1 105 ARG 105 180 180 ARG ARG A . n A 1 106 GLY 106 181 181 GLY GLY A . n A 1 107 ARG 107 182 182 ARG ARG A . n A 1 108 ALA 108 183 183 ALA ALA A . n A 1 109 TRP 109 184 184 TRP TRP A . n A 1 110 LEU 110 185 185 LEU LEU A . n A 1 111 ARG 111 186 186 ARG ARG A . n A 1 112 LEU 112 187 187 LEU LEU A . n A 1 113 ALA 113 188 188 ALA ALA A . n A 1 114 LEU 114 189 189 LEU LEU A . n A 1 115 MSE 115 190 190 MSE MSE A . n A 1 116 GLN 116 191 191 GLN GLN A . n A 1 117 LYS 117 192 192 LYS LYS A . n A 1 118 LYS 118 193 193 LYS LYS A . n A 1 119 LEU 119 194 194 LEU LEU A . n A 1 120 SER 120 195 195 SER SER A . n A 1 121 GLU 121 196 196 GLU GLU A . n A 1 122 TYR 122 197 197 TYR TYR A . n A 1 123 MSE 123 198 198 MSE MSE A . n A 1 124 LYS 124 199 199 LYS LYS A . n A 1 125 ALA 125 200 200 ALA ALA A . n A 1 126 LEU 126 201 201 LEU LEU A . n A 1 127 ILE 127 202 202 ILE ILE A . n A 1 128 ASN 128 203 203 ASN ASN A . n A 1 129 LYS 129 204 204 LYS LYS A . n A 1 130 LYS 130 205 205 LYS LYS A . n A 1 131 GLU 131 206 206 GLU GLU A . n A 1 132 LEU 132 207 207 LEU LEU A . n A 1 133 LEU 133 208 208 LEU LEU A . n A 1 134 SER 134 209 209 SER SER A . n A 1 135 GLU 135 210 210 GLU GLU A . n A 1 136 PHE 136 211 211 PHE PHE A . n A 1 137 TYR 137 212 212 TYR TYR A . n A 1 138 GLU 138 213 213 GLU GLU A . n A 1 139 VAL 139 214 214 VAL VAL A . n A 1 140 ASN 140 215 215 ASN ASN A . n A 1 141 ALA 141 216 216 ALA ALA A . n A 1 142 LEU 142 217 217 LEU LEU A . n A 1 143 MSE 143 218 218 MSE MSE A . n A 1 144 MSE 144 219 219 MSE MSE A . n A 1 145 GLU 145 220 220 GLU GLU A . n A 1 146 GLU 146 221 221 GLU GLU A . n A 1 147 GLU 147 222 222 GLU GLU A . n A 1 148 GLY 148 223 223 GLY GLY A . n A 1 149 ALA 149 224 224 ALA ALA A . n A 1 150 ILE 150 225 225 ILE ILE A . n A 1 151 ILE 151 226 226 ILE ILE A . n A 1 152 ALA 152 227 227 ALA ALA A . n A 1 153 GLY 153 228 228 GLY GLY A . n A 1 154 LEU 154 229 229 LEU LEU A . n A 1 155 LEU 155 230 230 LEU LEU A . n A 1 156 VAL 156 231 231 VAL VAL A . n A 1 157 GLY 157 232 232 GLY GLY A . n A 1 158 LEU 158 233 233 LEU LEU A . n A 1 159 ASN 159 234 234 ASN ASN A . n A 1 160 VAL 160 235 235 VAL VAL A . n A 1 161 ILE 161 236 236 ILE ILE A . n A 1 162 ASP 162 237 237 ASP ASP A . n A 1 163 ALA 163 238 238 ALA ALA A . n A 1 164 ASN 164 239 239 ASN ASN A . n A 1 165 PHE 165 240 240 PHE PHE A . n A 1 166 CYS 166 241 241 CYS CYS A . n A 1 167 MSE 167 242 242 MSE MSE A . n A 1 168 LYS 168 243 243 LYS LYS A . n A 1 169 GLY 169 244 244 GLY GLY A . n A 1 170 GLU 170 245 245 GLU GLU A . n A 1 171 ASP 171 246 246 ASP ASP A . n A 1 172 LEU 172 247 247 LEU LEU A . n A 1 173 ASP 173 248 248 ASP ASP A . n A 1 174 SER 174 249 249 SER SER A . n A 1 175 GLN 175 250 250 GLN GLN A . n A 1 176 VAL 176 251 251 VAL VAL A . n A 1 177 GLY 177 252 ? ? ? A . n A 1 178 VAL 178 253 ? ? ? A . n A 1 179 ILE 179 254 ? ? ? A . n A 1 180 ASP 180 255 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1 1 HOH TIP A . B 2 HOH 2 2 2 HOH TIP A . B 2 HOH 3 3 3 HOH TIP A . B 2 HOH 4 4 4 HOH TIP A . B 2 HOH 5 5 5 HOH TIP A . B 2 HOH 6 6 6 HOH TIP A . B 2 HOH 7 7 7 HOH TIP A . B 2 HOH 8 8 8 HOH TIP A . B 2 HOH 9 9 9 HOH TIP A . B 2 HOH 10 10 10 HOH TIP A . B 2 HOH 11 11 11 HOH TIP A . B 2 HOH 12 12 12 HOH TIP A . B 2 HOH 13 13 13 HOH TIP A . B 2 HOH 14 14 14 HOH TIP A . B 2 HOH 15 15 15 HOH TIP A . B 2 HOH 16 16 16 HOH TIP A . B 2 HOH 17 17 17 HOH TIP A . B 2 HOH 18 18 18 HOH TIP A . B 2 HOH 19 19 19 HOH TIP A . B 2 HOH 20 20 20 HOH TIP A . B 2 HOH 21 21 21 HOH TIP A . B 2 HOH 22 22 22 HOH TIP A . B 2 HOH 23 23 23 HOH TIP A . B 2 HOH 24 24 24 HOH TIP A . B 2 HOH 25 25 25 HOH TIP A . B 2 HOH 26 26 26 HOH TIP A . B 2 HOH 27 27 27 HOH TIP A . B 2 HOH 28 28 28 HOH TIP A . B 2 HOH 29 29 29 HOH TIP A . B 2 HOH 30 30 30 HOH TIP A . B 2 HOH 31 31 31 HOH TIP A . B 2 HOH 32 32 32 HOH TIP A . B 2 HOH 33 33 33 HOH TIP A . B 2 HOH 34 34 34 HOH TIP A . B 2 HOH 35 35 35 HOH TIP A . B 2 HOH 36 36 36 HOH TIP A . B 2 HOH 37 37 37 HOH TIP A . B 2 HOH 38 38 38 HOH TIP A . B 2 HOH 39 39 39 HOH TIP A . B 2 HOH 40 40 40 HOH TIP A . B 2 HOH 41 41 41 HOH TIP A . B 2 HOH 42 42 42 HOH TIP A . B 2 HOH 43 43 43 HOH TIP A . B 2 HOH 44 44 44 HOH TIP A . B 2 HOH 45 45 45 HOH TIP A . B 2 HOH 46 46 46 HOH TIP A . B 2 HOH 47 47 47 HOH TIP A . B 2 HOH 48 48 48 HOH TIP A . B 2 HOH 49 49 49 HOH TIP A . B 2 HOH 50 50 50 HOH TIP A . B 2 HOH 51 51 51 HOH TIP A . B 2 HOH 52 52 52 HOH TIP A . B 2 HOH 53 53 53 HOH TIP A . B 2 HOH 54 54 54 HOH TIP A . B 2 HOH 55 55 55 HOH TIP A . B 2 HOH 56 56 56 HOH TIP A . B 2 HOH 57 57 57 HOH TIP A . B 2 HOH 58 58 58 HOH TIP A . B 2 HOH 59 59 59 HOH TIP A . B 2 HOH 60 60 60 HOH TIP A . B 2 HOH 61 61 61 HOH TIP A . B 2 HOH 62 62 62 HOH TIP A . B 2 HOH 63 63 63 HOH TIP A . B 2 HOH 64 64 64 HOH TIP A . B 2 HOH 65 65 65 HOH TIP A . B 2 HOH 66 66 66 HOH TIP A . B 2 HOH 67 67 67 HOH TIP A . B 2 HOH 68 68 68 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # _cell.entry_id 2DWK _cell.length_a 86.523 _cell.length_b 86.523 _cell.length_c 106.582 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DWK _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2DWK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.05M SODIUM CHLORIDE, 1.4M AMMONIUM SULFATE, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 2004-11-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9792 1.0 2 0.9795 1.0 3 0.9640 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9792, 0.9795, 0.9640' # _reflns.entry_id 2DWK _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.0 _reflns.number_obs 16483 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.109 _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.B_iso_Wilson_estimate 24.5 _reflns.pdbx_redundancy 10.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.497 _reflns_shell.meanI_over_sigI_obs 5.2 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DWK _refine.ls_number_reflns_obs 16483 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1897785.36 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.59 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.205 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1657 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 38.8 _refine.aniso_B[1][1] 2.22 _refine.aniso_B[2][2] 2.22 _refine.aniso_B[3][3] -4.43 _refine.aniso_B[1][2] 0.34 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.366412 _refine.solvent_model_param_bsol 55.5477 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DWK _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.24 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1260 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 1328 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 33.59 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.99 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2416 _refine_ls_shell.R_factor_R_work 0.265 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.293 _refine_ls_shell.R_factor_R_free_error 0.018 _refine_ls_shell.percent_reflns_R_free 9.4 _refine_ls_shell.number_reflns_R_free 251 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2DWK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2DWK _struct.title 'Crystal structure of the RUN domain of mouse Rap2 interacting protein x' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DWK _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;RUN domain, effector, Rap2, bundle, protein binding, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUFY3_MOUSE _struct_ref.pdbx_db_accession Q9D394 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MANERMNLMNMAKLSIKGLIESALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAA EITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCM KGEDLDSQVGVID ; _struct_ref.pdbx_align_begin 65 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DWK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 180 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9D394 _struct_ref_seq.db_align_beg 65 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 237 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 83 _struct_ref_seq.pdbx_auth_seq_align_end 255 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DWK GLY A 1 ? UNP Q9D394 ? ? 'cloning artifact' 76 1 1 2DWK SER A 2 ? UNP Q9D394 ? ? 'cloning artifact' 77 2 1 2DWK SER A 3 ? UNP Q9D394 ? ? 'cloning artifact' 78 3 1 2DWK GLY A 4 ? UNP Q9D394 ? ? 'cloning artifact' 79 4 1 2DWK SER A 5 ? UNP Q9D394 ? ? 'cloning artifact' 80 5 1 2DWK SER A 6 ? UNP Q9D394 ? ? 'cloning artifact' 81 6 1 2DWK GLY A 7 ? UNP Q9D394 ? ? 'cloning artifact' 82 7 1 2DWK MSE A 8 ? UNP Q9D394 MET 65 'modified residue' 83 8 1 2DWK MSE A 13 ? UNP Q9D394 MET 70 'modified residue' 88 9 1 2DWK MSE A 16 ? UNP Q9D394 MET 73 'modified residue' 91 10 1 2DWK MSE A 18 ? UNP Q9D394 MET 75 'modified residue' 93 11 1 2DWK MSE A 51 ? UNP Q9D394 MET 108 'modified residue' 126 12 1 2DWK MSE A 115 ? UNP Q9D394 MET 172 'modified residue' 190 13 1 2DWK MSE A 123 ? UNP Q9D394 MET 180 'modified residue' 198 14 1 2DWK MSE A 143 ? UNP Q9D394 MET 200 'modified residue' 218 15 1 2DWK MSE A 144 ? UNP Q9D394 MET 201 'modified residue' 219 16 1 2DWK MSE A 167 ? UNP Q9D394 MET 224 'modified residue' 242 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 8 ? GLY A 34 ? MSE A 83 GLY A 109 1 ? 27 HELX_P HELX_P2 2 TYR A 41 ? HIS A 57 ? TYR A 116 HIS A 132 1 ? 17 HELX_P HELX_P3 3 PHE A 72 ? VAL A 83 ? PHE A 147 VAL A 158 1 ? 12 HELX_P HELX_P4 4 ALA A 86 ? ASP A 95 ? ALA A 161 ASP A 170 1 ? 10 HELX_P HELX_P5 5 THR A 101 ? LYS A 117 ? THR A 176 LYS A 192 1 ? 17 HELX_P HELX_P6 6 LYS A 118 ? ASN A 128 ? LYS A 193 ASN A 203 1 ? 11 HELX_P HELX_P7 7 LYS A 129 ? SER A 134 ? LYS A 204 SER A 209 1 ? 6 HELX_P HELX_P8 8 ALA A 141 ? MSE A 144 ? ALA A 216 MSE A 219 5 ? 4 HELX_P HELX_P9 9 GLU A 145 ? LEU A 155 ? GLU A 220 LEU A 230 1 ? 11 HELX_P HELX_P10 10 VAL A 156 ? ILE A 161 ? VAL A 231 ILE A 236 5 ? 6 HELX_P HELX_P11 11 LYS A 168 ? ASP A 173 ? LYS A 243 ASP A 248 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 8 C ? ? ? 1_555 A ALA 9 N ? ? A MSE 83 A ALA 84 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A ARG 12 C ? ? ? 1_555 A MSE 13 N ? ? A ARG 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale3 covale both ? A MSE 13 C ? ? ? 1_555 A ASN 14 N ? ? A MSE 88 A ASN 89 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A LEU 15 C ? ? ? 1_555 A MSE 16 N ? ? A LEU 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A MSE 16 C ? ? ? 1_555 A ASN 17 N ? ? A MSE 91 A ASN 92 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A ASN 17 C ? ? ? 1_555 A MSE 18 N ? ? A ASN 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A MSE 18 C ? ? ? 1_555 A ALA 19 N ? ? A MSE 93 A ALA 94 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A VAL 50 C ? ? ? 1_555 A MSE 51 N ? ? A VAL 125 A MSE 126 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale9 covale both ? A MSE 51 C ? ? ? 1_555 A GLU 52 N ? ? A MSE 126 A GLU 127 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale10 covale both ? A LEU 114 C ? ? ? 1_555 A MSE 115 N ? ? A LEU 189 A MSE 190 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale11 covale both ? A MSE 115 C ? ? ? 1_555 A GLN 116 N ? ? A MSE 190 A GLN 191 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? A TYR 122 C ? ? ? 1_555 A MSE 123 N ? ? A TYR 197 A MSE 198 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? A MSE 123 C ? ? ? 1_555 A LYS 124 N ? ? A MSE 198 A LYS 199 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale14 covale both ? A LEU 142 C ? ? ? 1_555 A MSE 143 N ? ? A LEU 217 A MSE 218 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale15 covale both ? A MSE 143 C ? ? ? 1_555 A MSE 144 N ? ? A MSE 218 A MSE 219 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale16 covale both ? A MSE 144 C ? ? ? 1_555 A GLU 145 N ? ? A MSE 219 A GLU 220 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale17 covale both ? A CYS 166 C ? ? ? 1_555 A MSE 167 N ? ? A CYS 241 A MSE 242 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale18 covale both ? A MSE 167 C ? ? ? 1_555 A LYS 168 N ? ? A MSE 242 A LYS 243 1_555 ? ? ? ? ? ? ? 1.330 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 8 ? . . . . MSE A 83 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 13 ? . . . . MSE A 88 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 16 ? . . . . MSE A 91 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 18 ? . . . . MSE A 93 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 51 ? . . . . MSE A 126 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE A 115 ? . . . . MSE A 190 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE A 123 ? . . . . MSE A 198 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MSE A 143 ? . . . . MSE A 218 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 9 MSE A 144 ? . . . . MSE A 219 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 10 MSE A 167 ? . . . . MSE A 242 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _pdbx_entry_details.entry_id 2DWK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 146 ? ? 47.52 -138.96 2 1 PRO A 172 ? ? -54.57 106.41 3 1 CYS A 241 ? ? -121.24 -153.97 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 83 ? MET SELENOMETHIONINE 2 A MSE 13 A MSE 88 ? MET SELENOMETHIONINE 3 A MSE 16 A MSE 91 ? MET SELENOMETHIONINE 4 A MSE 18 A MSE 93 ? MET SELENOMETHIONINE 5 A MSE 51 A MSE 126 ? MET SELENOMETHIONINE 6 A MSE 115 A MSE 190 ? MET SELENOMETHIONINE 7 A MSE 123 A MSE 198 ? MET SELENOMETHIONINE 8 A MSE 143 A MSE 218 ? MET SELENOMETHIONINE 9 A MSE 144 A MSE 219 ? MET SELENOMETHIONINE 10 A MSE 167 A MSE 242 ? MET SELENOMETHIONINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 64 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 76 ? A GLY 1 2 1 Y 1 A SER 77 ? A SER 2 3 1 Y 1 A SER 78 ? A SER 3 4 1 Y 1 A GLY 79 ? A GLY 4 5 1 Y 1 A SER 80 ? A SER 5 6 1 Y 1 A SER 81 ? A SER 6 7 1 Y 1 A GLY 82 ? A GLY 7 8 1 Y 1 A LYS 137 ? A LYS 62 9 1 Y 1 A LYS 138 ? A LYS 63 10 1 Y 1 A THR 139 ? A THR 64 11 1 Y 1 A PHE 140 ? A PHE 65 12 1 Y 1 A LEU 141 ? A LEU 66 13 1 Y 1 A GLY 142 ? A GLY 67 14 1 Y 1 A GLN 143 ? A GLN 68 15 1 Y 1 A GLY 252 ? A GLY 177 16 1 Y 1 A VAL 253 ? A VAL 178 17 1 Y 1 A ILE 254 ? A ILE 179 18 1 Y 1 A ASP 255 ? A ASP 180 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MSE N N N N 250 MSE CA C N S 251 MSE C C N N 252 MSE O O N N 253 MSE OXT O N N 254 MSE CB C N N 255 MSE CG C N N 256 MSE SE SE N N 257 MSE CE C N N 258 MSE H H N N 259 MSE H2 H N N 260 MSE HA H N N 261 MSE HXT H N N 262 MSE HB2 H N N 263 MSE HB3 H N N 264 MSE HG2 H N N 265 MSE HG3 H N N 266 MSE HE1 H N N 267 MSE HE2 H N N 268 MSE HE3 H N N 269 PHE N N N N 270 PHE CA C N S 271 PHE C C N N 272 PHE O O N N 273 PHE CB C N N 274 PHE CG C Y N 275 PHE CD1 C Y N 276 PHE CD2 C Y N 277 PHE CE1 C Y N 278 PHE CE2 C Y N 279 PHE CZ C Y N 280 PHE OXT O N N 281 PHE H H N N 282 PHE H2 H N N 283 PHE HA H N N 284 PHE HB2 H N N 285 PHE HB3 H N N 286 PHE HD1 H N N 287 PHE HD2 H N N 288 PHE HE1 H N N 289 PHE HE2 H N N 290 PHE HZ H N N 291 PHE HXT H N N 292 PRO N N N N 293 PRO CA C N S 294 PRO C C N N 295 PRO O O N N 296 PRO CB C N N 297 PRO CG C N N 298 PRO CD C N N 299 PRO OXT O N N 300 PRO H H N N 301 PRO HA H N N 302 PRO HB2 H N N 303 PRO HB3 H N N 304 PRO HG2 H N N 305 PRO HG3 H N N 306 PRO HD2 H N N 307 PRO HD3 H N N 308 PRO HXT H N N 309 SER N N N N 310 SER CA C N S 311 SER C C N N 312 SER O O N N 313 SER CB C N N 314 SER OG O N N 315 SER OXT O N N 316 SER H H N N 317 SER H2 H N N 318 SER HA H N N 319 SER HB2 H N N 320 SER HB3 H N N 321 SER HG H N N 322 SER HXT H N N 323 THR N N N N 324 THR CA C N S 325 THR C C N N 326 THR O O N N 327 THR CB C N R 328 THR OG1 O N N 329 THR CG2 C N N 330 THR OXT O N N 331 THR H H N N 332 THR H2 H N N 333 THR HA H N N 334 THR HB H N N 335 THR HG1 H N N 336 THR HG21 H N N 337 THR HG22 H N N 338 THR HG23 H N N 339 THR HXT H N N 340 TRP N N N N 341 TRP CA C N S 342 TRP C C N N 343 TRP O O N N 344 TRP CB C N N 345 TRP CG C Y N 346 TRP CD1 C Y N 347 TRP CD2 C Y N 348 TRP NE1 N Y N 349 TRP CE2 C Y N 350 TRP CE3 C Y N 351 TRP CZ2 C Y N 352 TRP CZ3 C Y N 353 TRP CH2 C Y N 354 TRP OXT O N N 355 TRP H H N N 356 TRP H2 H N N 357 TRP HA H N N 358 TRP HB2 H N N 359 TRP HB3 H N N 360 TRP HD1 H N N 361 TRP HE1 H N N 362 TRP HE3 H N N 363 TRP HZ2 H N N 364 TRP HZ3 H N N 365 TRP HH2 H N N 366 TRP HXT H N N 367 TYR N N N N 368 TYR CA C N S 369 TYR C C N N 370 TYR O O N N 371 TYR CB C N N 372 TYR CG C Y N 373 TYR CD1 C Y N 374 TYR CD2 C Y N 375 TYR CE1 C Y N 376 TYR CE2 C Y N 377 TYR CZ C Y N 378 TYR OH O N N 379 TYR OXT O N N 380 TYR H H N N 381 TYR H2 H N N 382 TYR HA H N N 383 TYR HB2 H N N 384 TYR HB3 H N N 385 TYR HD1 H N N 386 TYR HD2 H N N 387 TYR HE1 H N N 388 TYR HE2 H N N 389 TYR HH H N N 390 TYR HXT H N N 391 VAL N N N N 392 VAL CA C N S 393 VAL C C N N 394 VAL O O N N 395 VAL CB C N N 396 VAL CG1 C N N 397 VAL CG2 C N N 398 VAL OXT O N N 399 VAL H H N N 400 VAL H2 H N N 401 VAL HA H N N 402 VAL HB H N N 403 VAL HG11 H N N 404 VAL HG12 H N N 405 VAL HG13 H N N 406 VAL HG21 H N N 407 VAL HG22 H N N 408 VAL HG23 H N N 409 VAL HXT H N N 410 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MSE N CA sing N N 237 MSE N H sing N N 238 MSE N H2 sing N N 239 MSE CA C sing N N 240 MSE CA CB sing N N 241 MSE CA HA sing N N 242 MSE C O doub N N 243 MSE C OXT sing N N 244 MSE OXT HXT sing N N 245 MSE CB CG sing N N 246 MSE CB HB2 sing N N 247 MSE CB HB3 sing N N 248 MSE CG SE sing N N 249 MSE CG HG2 sing N N 250 MSE CG HG3 sing N N 251 MSE SE CE sing N N 252 MSE CE HE1 sing N N 253 MSE CE HE2 sing N N 254 MSE CE HE3 sing N N 255 PHE N CA sing N N 256 PHE N H sing N N 257 PHE N H2 sing N N 258 PHE CA C sing N N 259 PHE CA CB sing N N 260 PHE CA HA sing N N 261 PHE C O doub N N 262 PHE C OXT sing N N 263 PHE CB CG sing N N 264 PHE CB HB2 sing N N 265 PHE CB HB3 sing N N 266 PHE CG CD1 doub Y N 267 PHE CG CD2 sing Y N 268 PHE CD1 CE1 sing Y N 269 PHE CD1 HD1 sing N N 270 PHE CD2 CE2 doub Y N 271 PHE CD2 HD2 sing N N 272 PHE CE1 CZ doub Y N 273 PHE CE1 HE1 sing N N 274 PHE CE2 CZ sing Y N 275 PHE CE2 HE2 sing N N 276 PHE CZ HZ sing N N 277 PHE OXT HXT sing N N 278 PRO N CA sing N N 279 PRO N CD sing N N 280 PRO N H sing N N 281 PRO CA C sing N N 282 PRO CA CB sing N N 283 PRO CA HA sing N N 284 PRO C O doub N N 285 PRO C OXT sing N N 286 PRO CB CG sing N N 287 PRO CB HB2 sing N N 288 PRO CB HB3 sing N N 289 PRO CG CD sing N N 290 PRO CG HG2 sing N N 291 PRO CG HG3 sing N N 292 PRO CD HD2 sing N N 293 PRO CD HD3 sing N N 294 PRO OXT HXT sing N N 295 SER N CA sing N N 296 SER N H sing N N 297 SER N H2 sing N N 298 SER CA C sing N N 299 SER CA CB sing N N 300 SER CA HA sing N N 301 SER C O doub N N 302 SER C OXT sing N N 303 SER CB OG sing N N 304 SER CB HB2 sing N N 305 SER CB HB3 sing N N 306 SER OG HG sing N N 307 SER OXT HXT sing N N 308 THR N CA sing N N 309 THR N H sing N N 310 THR N H2 sing N N 311 THR CA C sing N N 312 THR CA CB sing N N 313 THR CA HA sing N N 314 THR C O doub N N 315 THR C OXT sing N N 316 THR CB OG1 sing N N 317 THR CB CG2 sing N N 318 THR CB HB sing N N 319 THR OG1 HG1 sing N N 320 THR CG2 HG21 sing N N 321 THR CG2 HG22 sing N N 322 THR CG2 HG23 sing N N 323 THR OXT HXT sing N N 324 TRP N CA sing N N 325 TRP N H sing N N 326 TRP N H2 sing N N 327 TRP CA C sing N N 328 TRP CA CB sing N N 329 TRP CA HA sing N N 330 TRP C O doub N N 331 TRP C OXT sing N N 332 TRP CB CG sing N N 333 TRP CB HB2 sing N N 334 TRP CB HB3 sing N N 335 TRP CG CD1 doub Y N 336 TRP CG CD2 sing Y N 337 TRP CD1 NE1 sing Y N 338 TRP CD1 HD1 sing N N 339 TRP CD2 CE2 doub Y N 340 TRP CD2 CE3 sing Y N 341 TRP NE1 CE2 sing Y N 342 TRP NE1 HE1 sing N N 343 TRP CE2 CZ2 sing Y N 344 TRP CE3 CZ3 doub Y N 345 TRP CE3 HE3 sing N N 346 TRP CZ2 CH2 doub Y N 347 TRP CZ2 HZ2 sing N N 348 TRP CZ3 CH2 sing Y N 349 TRP CZ3 HZ3 sing N N 350 TRP CH2 HH2 sing N N 351 TRP OXT HXT sing N N 352 TYR N CA sing N N 353 TYR N H sing N N 354 TYR N H2 sing N N 355 TYR CA C sing N N 356 TYR CA CB sing N N 357 TYR CA HA sing N N 358 TYR C O doub N N 359 TYR C OXT sing N N 360 TYR CB CG sing N N 361 TYR CB HB2 sing N N 362 TYR CB HB3 sing N N 363 TYR CG CD1 doub Y N 364 TYR CG CD2 sing Y N 365 TYR CD1 CE1 sing Y N 366 TYR CD1 HD1 sing N N 367 TYR CD2 CE2 doub Y N 368 TYR CD2 HD2 sing N N 369 TYR CE1 CZ doub Y N 370 TYR CE1 HE1 sing N N 371 TYR CE2 CZ sing Y N 372 TYR CE2 HE2 sing N N 373 TYR CZ OH sing N N 374 TYR OH HH sing N N 375 TYR OXT HXT sing N N 376 VAL N CA sing N N 377 VAL N H sing N N 378 VAL N H2 sing N N 379 VAL CA C sing N N 380 VAL CA CB sing N N 381 VAL CA HA sing N N 382 VAL C O doub N N 383 VAL C OXT sing N N 384 VAL CB CG1 sing N N 385 VAL CB CG2 sing N N 386 VAL CB HB sing N N 387 VAL CG1 HG11 sing N N 388 VAL CG1 HG12 sing N N 389 VAL CG1 HG13 sing N N 390 VAL CG2 HG21 sing N N 391 VAL CG2 HG22 sing N N 392 VAL CG2 HG23 sing N N 393 VAL OXT HXT sing N N 394 # _atom_sites.entry_id 2DWK _atom_sites.fract_transf_matrix[1][1] 0.011558 _atom_sites.fract_transf_matrix[1][2] 0.006673 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013346 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009382 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_