HEADER PROTEIN TRANSPORT 21-AUG-06 2DWX TITLE CO-CRYSTAL STRUCTURE ANALYSIS OF GGA1-GAE WITH THE WNSF MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR-BINDING PROTEIN GGA1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: GAE DOMAIN, RESIDUES 507-639; COMPND 5 SYNONYM: GOLGI-LOCALIZED, GAMMA EAR-CONTAINING, ARF-BINDING PROTEIN COMPND 6 1, GAMMA-ADAPTIN-RELATED PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HINGE PEPTIDE FROM ADP-RIBOSYLATION FACTOR BINDING PROTEIN COMPND 10 GGA1; COMPND 11 CHAIN: P, Q; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T-2; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS IG FOLD, ADAPTIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.INOUE,T.SHIBA,Y.YAMADA,K.IHARA,M.KAWASAKI,R.KATO,K.NAKAYAMA, AUTHOR 2 S.WAKATSUKI REVDAT 5 25-OCT-23 2DWX 1 REMARK REVDAT 4 24-FEB-09 2DWX 1 VERSN REVDAT 3 03-JUL-07 2DWX 1 JRNL REVDAT 2 26-JUN-07 2DWX 1 REMARK REVDAT 1 17-APR-07 2DWX 0 JRNL AUTH M.INOUE,T.SHIBA,K.IHARA,Y.YAMADA,S.HIRANO,H.KAMIKUBO, JRNL AUTH 2 M.KATAOKA,M.KAWASAKI,R.KATO,K.NAKAYAMA,S.WAKATSUKI JRNL TITL MOLECULAR BASIS FOR AUTOREGULATORY INTERACTION BETWEEN GAE JRNL TITL 2 DOMAIN AND HINGE REGION OF GGA1 JRNL REF TRAFFIC V. 8 904 2007 JRNL REFN ISSN 1398-9219 JRNL PMID 17506864 JRNL DOI 10.1111/J.1600-0854.2007.00577.X REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 19211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4113 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.850 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.280 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4223 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3891 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5769 ; 1.779 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9093 ; 0.939 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 6.163 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4565 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 796 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 814 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4590 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2613 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.245 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 77 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.050 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2624 ; 1.046 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4322 ; 1.929 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1599 ; 1.811 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1447 ; 3.120 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000025944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDBENTRY 1IU1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, DI-AMMONIUM TARTRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.48350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.48350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 507 REMARK 465 LYS A 508 REMARK 465 PRO A 509 REMARK 465 SER A 510 REMARK 465 ILE B 507 REMARK 465 LYS B 508 REMARK 465 PRO B 509 REMARK 465 SER B 510 REMARK 465 ASN B 511 REMARK 465 PRO B 565 REMARK 465 LYS B 566 REMARK 465 VAL B 567 REMARK 465 MET B 568 REMARK 465 LYS B 569 REMARK 465 LYS B 605 REMARK 465 VAL B 606 REMARK 465 ARG B 607 REMARK 465 LEU B 608 REMARK 465 ILE C 507 REMARK 465 LYS C 508 REMARK 465 PRO C 509 REMARK 465 SER C 510 REMARK 465 ASN C 511 REMARK 465 ILE D 507 REMARK 465 LYS D 508 REMARK 465 PRO D 509 REMARK 465 SER D 510 REMARK 465 SER P -6 REMARK 465 LEU P -5 REMARK 465 ASP P -4 REMARK 465 GLY P -3 REMARK 465 THR P -2 REMARK 465 SER Q -6 REMARK 465 LEU Q -5 REMARK 465 ASP Q -4 REMARK 465 GLY Q -3 REMARK 465 THR Q -2 REMARK 465 SER Q 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 532 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 626 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ILE B 512 CA - C - O ANGL. DEV. = -14.3 DEGREES REMARK 500 ILE B 512 CA - C - N ANGL. DEV. = 27.1 DEGREES REMARK 500 ILE B 512 O - C - N ANGL. DEV. = -26.8 DEGREES REMARK 500 LEU B 513 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 ASP C 519 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG C 531 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 PRO C 632 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 ASP D 539 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 512 -31.31 -26.42 REMARK 500 SER A 538 34.88 -142.80 REMARK 500 ASN A 600 57.71 -144.34 REMARK 500 ALA B 530 -114.90 -128.04 REMARK 500 ARG B 531 136.50 146.48 REMARK 500 ALA B 563 120.90 171.75 REMARK 500 ASN B 600 90.78 -14.94 REMARK 500 PRO B 601 -79.97 -79.22 REMARK 500 ASP B 628 24.00 -142.31 REMARK 500 SER B 638 -62.79 -167.01 REMARK 500 ASP C 519 74.03 -153.62 REMARK 500 SER C 538 52.83 -142.21 REMARK 500 THR C 550 41.31 -101.11 REMARK 500 ILE C 586 -73.84 -81.09 REMARK 500 VAL C 587 124.57 -36.85 REMARK 500 PRO C 632 -59.28 -13.21 REMARK 500 GLU C 634 -5.01 -53.79 REMARK 500 ASP D 519 74.33 -158.63 REMARK 500 PRO D 552 -4.74 -59.96 REMARK 500 LYS D 603 43.78 76.32 REMARK 500 GLN D 629 67.48 -108.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 512 39.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DWY RELATED DB: PDB DBREF 2DWX A 507 639 UNP Q9UJY5 GGA1_HUMAN 507 639 DBREF 2DWX B 507 639 UNP Q9UJY5 GGA1_HUMAN 507 639 DBREF 2DWX C 507 639 UNP Q9UJY5 GGA1_HUMAN 507 639 DBREF 2DWX D 507 639 UNP Q9UJY5 GGA1_HUMAN 507 639 DBREF 2DWX P -6 6 UNP Q9UJY5 GGA1_HUMAN 376 388 DBREF 2DWX Q -6 6 UNP Q9UJY5 GGA1_HUMAN 376 388 SEQRES 1 A 133 ILE LYS PRO SER ASN ILE LEU PRO VAL THR VAL TYR ASP SEQRES 2 A 133 GLN HIS GLY PHE ARG ILE LEU PHE HIS PHE ALA ARG ASP SEQRES 3 A 133 PRO LEU PRO GLY ARG SER ASP VAL LEU VAL VAL VAL VAL SEQRES 4 A 133 SER MET LEU SER THR ALA PRO GLN PRO ILE ARG ASN ILE SEQRES 5 A 133 VAL PHE GLN SER ALA VAL PRO LYS VAL MET LYS VAL LYS SEQRES 6 A 133 LEU GLN PRO PRO SER GLY THR GLU LEU PRO ALA PHE ASN SEQRES 7 A 133 PRO ILE VAL HIS PRO SER ALA ILE THR GLN VAL LEU LEU SEQRES 8 A 133 LEU ALA ASN PRO GLN LYS GLU LYS VAL ARG LEU ARG TYR SEQRES 9 A 133 LYS LEU THR PHE THR MET GLY ASP GLN THR TYR ASN GLU SEQRES 10 A 133 MET GLY ASP VAL ASP GLN PHE PRO PRO PRO GLU THR TRP SEQRES 11 A 133 GLY SER LEU SEQRES 1 B 133 ILE LYS PRO SER ASN ILE LEU PRO VAL THR VAL TYR ASP SEQRES 2 B 133 GLN HIS GLY PHE ARG ILE LEU PHE HIS PHE ALA ARG ASP SEQRES 3 B 133 PRO LEU PRO GLY ARG SER ASP VAL LEU VAL VAL VAL VAL SEQRES 4 B 133 SER MET LEU SER THR ALA PRO GLN PRO ILE ARG ASN ILE SEQRES 5 B 133 VAL PHE GLN SER ALA VAL PRO LYS VAL MET LYS VAL LYS SEQRES 6 B 133 LEU GLN PRO PRO SER GLY THR GLU LEU PRO ALA PHE ASN SEQRES 7 B 133 PRO ILE VAL HIS PRO SER ALA ILE THR GLN VAL LEU LEU SEQRES 8 B 133 LEU ALA ASN PRO GLN LYS GLU LYS VAL ARG LEU ARG TYR SEQRES 9 B 133 LYS LEU THR PHE THR MET GLY ASP GLN THR TYR ASN GLU SEQRES 10 B 133 MET GLY ASP VAL ASP GLN PHE PRO PRO PRO GLU THR TRP SEQRES 11 B 133 GLY SER LEU SEQRES 1 C 133 ILE LYS PRO SER ASN ILE LEU PRO VAL THR VAL TYR ASP SEQRES 2 C 133 GLN HIS GLY PHE ARG ILE LEU PHE HIS PHE ALA ARG ASP SEQRES 3 C 133 PRO LEU PRO GLY ARG SER ASP VAL LEU VAL VAL VAL VAL SEQRES 4 C 133 SER MET LEU SER THR ALA PRO GLN PRO ILE ARG ASN ILE SEQRES 5 C 133 VAL PHE GLN SER ALA VAL PRO LYS VAL MET LYS VAL LYS SEQRES 6 C 133 LEU GLN PRO PRO SER GLY THR GLU LEU PRO ALA PHE ASN SEQRES 7 C 133 PRO ILE VAL HIS PRO SER ALA ILE THR GLN VAL LEU LEU SEQRES 8 C 133 LEU ALA ASN PRO GLN LYS GLU LYS VAL ARG LEU ARG TYR SEQRES 9 C 133 LYS LEU THR PHE THR MET GLY ASP GLN THR TYR ASN GLU SEQRES 10 C 133 MET GLY ASP VAL ASP GLN PHE PRO PRO PRO GLU THR TRP SEQRES 11 C 133 GLY SER LEU SEQRES 1 D 133 ILE LYS PRO SER ASN ILE LEU PRO VAL THR VAL TYR ASP SEQRES 2 D 133 GLN HIS GLY PHE ARG ILE LEU PHE HIS PHE ALA ARG ASP SEQRES 3 D 133 PRO LEU PRO GLY ARG SER ASP VAL LEU VAL VAL VAL VAL SEQRES 4 D 133 SER MET LEU SER THR ALA PRO GLN PRO ILE ARG ASN ILE SEQRES 5 D 133 VAL PHE GLN SER ALA VAL PRO LYS VAL MET LYS VAL LYS SEQRES 6 D 133 LEU GLN PRO PRO SER GLY THR GLU LEU PRO ALA PHE ASN SEQRES 7 D 133 PRO ILE VAL HIS PRO SER ALA ILE THR GLN VAL LEU LEU SEQRES 8 D 133 LEU ALA ASN PRO GLN LYS GLU LYS VAL ARG LEU ARG TYR SEQRES 9 D 133 LYS LEU THR PHE THR MET GLY ASP GLN THR TYR ASN GLU SEQRES 10 D 133 MET GLY ASP VAL ASP GLN PHE PRO PRO PRO GLU THR TRP SEQRES 11 D 133 GLY SER LEU SEQRES 1 P 13 SER LEU ASP GLY THR GLY TRP ASN SER PHE GLN SER SER SEQRES 1 Q 13 SER LEU ASP GLY THR GLY TRP ASN SER PHE GLN SER SER FORMUL 7 HOH *122(H2 O) HELIX 1 1 PRO A 632 GLY A 637 5 6 HELIX 2 2 PRO D 632 LEU D 639 5 8 SHEET 1 A 5 VAL A 515 GLN A 520 0 SHEET 2 A 5 PHE A 523 ARG A 531 -1 O PHE A 527 N VAL A 515 SHEET 3 A 5 VAL A 540 SER A 549 -1 O LEU A 548 N ARG A 524 SHEET 4 A 5 ILE A 592 ALA A 599 -1 O GLN A 594 N VAL A 545 SHEET 5 A 5 LYS A 569 LEU A 572 -1 N LYS A 571 O LEU A 597 SHEET 1 B 3 ILE A 555 ALA A 563 0 SHEET 2 B 3 LEU A 608 MET A 616 -1 O THR A 615 N ARG A 556 SHEET 3 B 3 GLN A 619 VAL A 627 -1 O GLU A 623 N LEU A 612 SHEET 1 C 4 VAL B 515 GLN B 520 0 SHEET 2 C 4 PHE B 523 PHE B 529 -1 O PHE B 527 N VAL B 515 SHEET 3 C 4 VAL B 543 SER B 549 -1 O VAL B 544 N HIS B 528 SHEET 4 C 4 ILE B 592 LEU B 596 -1 O ILE B 592 N MET B 547 SHEET 1 D 3 ARG B 556 GLN B 561 0 SHEET 2 D 3 TYR B 610 THR B 615 -1 O THR B 615 N ARG B 556 SHEET 3 D 3 THR B 620 GLY B 625 -1 O GLU B 623 N LEU B 612 SHEET 1 E 5 VAL C 515 GLN C 520 0 SHEET 2 E 5 PHE C 523 ARG C 531 -1 O PHE C 527 N VAL C 515 SHEET 3 E 5 VAL C 540 SER C 549 -1 O LEU C 548 N ARG C 524 SHEET 4 E 5 ILE C 592 ALA C 599 -1 O GLN C 594 N VAL C 545 SHEET 5 E 5 LYS C 569 LEU C 572 -1 N LYS C 571 O LEU C 597 SHEET 1 F 4 THR C 620 VAL C 627 0 SHEET 2 F 4 LEU C 608 THR C 615 -1 N LEU C 612 O GLU C 623 SHEET 3 F 4 ARG C 556 PRO C 565 -1 N ALA C 563 O ARG C 609 SHEET 4 F 4 TRP Q 0 GLN Q 4 -1 O GLN Q 4 N SER C 562 SHEET 1 G 5 VAL D 515 GLN D 520 0 SHEET 2 G 5 PHE D 523 ALA D 530 -1 O PHE D 527 N VAL D 515 SHEET 3 G 5 VAL D 540 LEU D 548 -1 O VAL D 544 N HIS D 528 SHEET 4 G 5 ILE D 592 ALA D 599 -1 O ILE D 592 N MET D 547 SHEET 5 G 5 LYS D 569 LEU D 572 -1 N LYS D 571 O LEU D 597 SHEET 1 H 3 ARG D 556 ALA D 563 0 SHEET 2 H 3 LEU D 608 THR D 615 -1 O ARG D 609 N ALA D 563 SHEET 3 H 3 THR D 620 VAL D 627 -1 O VAL D 627 N LEU D 608 CISPEP 1 ASP A 532 PRO A 533 0 -7.56 CISPEP 2 PRO C 632 PRO C 633 0 3.56 CRYST1 48.220 69.620 184.967 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005406 0.00000