data_2DX1 # _entry.id 2DX1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2DX1 RCSB RCSB025948 WWPDB D_1000025948 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id srz001000072.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DX1 _pdbx_database_status.recvd_initial_deposition_date 2006-08-22 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Murayama, K.' 1 'Kato-Murayama, M.' 2 'Terada, T.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of the rac activator, Asef, reveals its autoinhibitory mechanism' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 282 _citation.page_first 4238 _citation.page_last 4242 _citation.year 2007 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17190834 _citation.pdbx_database_id_DOI 10.1074/jbc.C600234200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Murayama, K.' 1 primary 'Shirouzu, M.' 2 primary 'Kawasaki, Y.' 3 primary 'Kato-Murayama, M.' 4 primary 'Hanawa-Suetsugu, K.' 5 primary 'Sakamoto, A.' 6 primary 'Katsura, Y.' 7 primary 'Suenaga, A.' 8 primary 'Toyama, M.' 9 primary 'Terada, T.' 10 primary 'Taiji, M.' 11 primary 'Akiyama, T.' 12 primary 'Yokoyama, S.' 13 # _cell.entry_id 2DX1 _cell.length_a 100.932 _cell.length_b 79.818 _cell.length_c 68.004 _cell.angle_alpha 90.00 _cell.angle_beta 123.25 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DX1 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Rho guanine nucleotide exchange factor 4' 55623.777 1 ? ? 'residues 59-540' ? 2 water nat water 18.015 64 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'APC-stimulated guanine nucleotide exchange factor, Asef' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDGTCTGA(MSE)PDGALDTAVCADEVGSEEDLYDDLHSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDH VT(MSE)DDQELGFKAGDVIEV(MSE)DATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEA QSSKDQ(MSE)RTNVINEILSTERDYIKHLRDICEGYVRQCRKRAD(MSE)FSEEQLRTIFGNIEDIYRCQKAFVKALEQ RFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQK(MSE)IDISLDGFLLTPVQ KICKYPLQLAELLKYTHPQHRDFKDVEAALHA(MSE)KNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELI YSGELTRVTQPQAKSQQR(MSE)FFLFDHQLIYCKKDLLRRDVLYYKGRLD(MSE)DGLEVVDLEDGKDRDLHVSIKNAF RLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDGTCTGAMPDGALDTAVCADEVGSEEDLYDDLHSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMD DQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQMRTNVI NEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQ ADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFK DVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLI YCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQ LD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier srz001000072.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 GLY n 1 10 THR n 1 11 CYS n 1 12 THR n 1 13 GLY n 1 14 ALA n 1 15 MSE n 1 16 PRO n 1 17 ASP n 1 18 GLY n 1 19 ALA n 1 20 LEU n 1 21 ASP n 1 22 THR n 1 23 ALA n 1 24 VAL n 1 25 CYS n 1 26 ALA n 1 27 ASP n 1 28 GLU n 1 29 VAL n 1 30 GLY n 1 31 SER n 1 32 GLU n 1 33 GLU n 1 34 ASP n 1 35 LEU n 1 36 TYR n 1 37 ASP n 1 38 ASP n 1 39 LEU n 1 40 HIS n 1 41 SER n 1 42 SER n 1 43 SER n 1 44 HIS n 1 45 HIS n 1 46 TYR n 1 47 SER n 1 48 HIS n 1 49 PRO n 1 50 GLY n 1 51 GLY n 1 52 GLY n 1 53 GLY n 1 54 GLU n 1 55 GLN n 1 56 LEU n 1 57 ALA n 1 58 ILE n 1 59 ASN n 1 60 GLU n 1 61 LEU n 1 62 ILE n 1 63 SER n 1 64 ASP n 1 65 GLY n 1 66 SER n 1 67 VAL n 1 68 VAL n 1 69 CYS n 1 70 ALA n 1 71 GLU n 1 72 ALA n 1 73 LEU n 1 74 TRP n 1 75 ASP n 1 76 HIS n 1 77 VAL n 1 78 THR n 1 79 MSE n 1 80 ASP n 1 81 ASP n 1 82 GLN n 1 83 GLU n 1 84 LEU n 1 85 GLY n 1 86 PHE n 1 87 LYS n 1 88 ALA n 1 89 GLY n 1 90 ASP n 1 91 VAL n 1 92 ILE n 1 93 GLU n 1 94 VAL n 1 95 MSE n 1 96 ASP n 1 97 ALA n 1 98 THR n 1 99 ASN n 1 100 ARG n 1 101 GLU n 1 102 TRP n 1 103 TRP n 1 104 TRP n 1 105 GLY n 1 106 ARG n 1 107 VAL n 1 108 ALA n 1 109 ASP n 1 110 GLY n 1 111 GLU n 1 112 GLY n 1 113 TRP n 1 114 PHE n 1 115 PRO n 1 116 ALA n 1 117 SER n 1 118 PHE n 1 119 VAL n 1 120 ARG n 1 121 LEU n 1 122 ARG n 1 123 VAL n 1 124 ASN n 1 125 GLN n 1 126 ASP n 1 127 GLU n 1 128 PRO n 1 129 ALA n 1 130 ASP n 1 131 ASP n 1 132 ASP n 1 133 ALA n 1 134 PRO n 1 135 LEU n 1 136 ALA n 1 137 GLY n 1 138 ASN n 1 139 SER n 1 140 GLY n 1 141 ALA n 1 142 GLU n 1 143 ASP n 1 144 GLY n 1 145 GLY n 1 146 ALA n 1 147 GLU n 1 148 ALA n 1 149 GLN n 1 150 SER n 1 151 SER n 1 152 LYS n 1 153 ASP n 1 154 GLN n 1 155 MSE n 1 156 ARG n 1 157 THR n 1 158 ASN n 1 159 VAL n 1 160 ILE n 1 161 ASN n 1 162 GLU n 1 163 ILE n 1 164 LEU n 1 165 SER n 1 166 THR n 1 167 GLU n 1 168 ARG n 1 169 ASP n 1 170 TYR n 1 171 ILE n 1 172 LYS n 1 173 HIS n 1 174 LEU n 1 175 ARG n 1 176 ASP n 1 177 ILE n 1 178 CYS n 1 179 GLU n 1 180 GLY n 1 181 TYR n 1 182 VAL n 1 183 ARG n 1 184 GLN n 1 185 CYS n 1 186 ARG n 1 187 LYS n 1 188 ARG n 1 189 ALA n 1 190 ASP n 1 191 MSE n 1 192 PHE n 1 193 SER n 1 194 GLU n 1 195 GLU n 1 196 GLN n 1 197 LEU n 1 198 ARG n 1 199 THR n 1 200 ILE n 1 201 PHE n 1 202 GLY n 1 203 ASN n 1 204 ILE n 1 205 GLU n 1 206 ASP n 1 207 ILE n 1 208 TYR n 1 209 ARG n 1 210 CYS n 1 211 GLN n 1 212 LYS n 1 213 ALA n 1 214 PHE n 1 215 VAL n 1 216 LYS n 1 217 ALA n 1 218 LEU n 1 219 GLU n 1 220 GLN n 1 221 ARG n 1 222 PHE n 1 223 ASN n 1 224 ARG n 1 225 GLU n 1 226 ARG n 1 227 PRO n 1 228 HIS n 1 229 LEU n 1 230 SER n 1 231 GLU n 1 232 LEU n 1 233 GLY n 1 234 ALA n 1 235 CYS n 1 236 PHE n 1 237 LEU n 1 238 GLU n 1 239 HIS n 1 240 GLN n 1 241 ALA n 1 242 ASP n 1 243 PHE n 1 244 GLN n 1 245 ILE n 1 246 TYR n 1 247 SER n 1 248 GLU n 1 249 TYR n 1 250 CYS n 1 251 ASN n 1 252 ASN n 1 253 HIS n 1 254 PRO n 1 255 ASN n 1 256 ALA n 1 257 CYS n 1 258 VAL n 1 259 GLU n 1 260 LEU n 1 261 SER n 1 262 ARG n 1 263 LEU n 1 264 THR n 1 265 LYS n 1 266 LEU n 1 267 SER n 1 268 LYS n 1 269 TYR n 1 270 VAL n 1 271 TYR n 1 272 PHE n 1 273 PHE n 1 274 GLU n 1 275 ALA n 1 276 CYS n 1 277 ARG n 1 278 LEU n 1 279 LEU n 1 280 GLN n 1 281 LYS n 1 282 MSE n 1 283 ILE n 1 284 ASP n 1 285 ILE n 1 286 SER n 1 287 LEU n 1 288 ASP n 1 289 GLY n 1 290 PHE n 1 291 LEU n 1 292 LEU n 1 293 THR n 1 294 PRO n 1 295 VAL n 1 296 GLN n 1 297 LYS n 1 298 ILE n 1 299 CYS n 1 300 LYS n 1 301 TYR n 1 302 PRO n 1 303 LEU n 1 304 GLN n 1 305 LEU n 1 306 ALA n 1 307 GLU n 1 308 LEU n 1 309 LEU n 1 310 LYS n 1 311 TYR n 1 312 THR n 1 313 HIS n 1 314 PRO n 1 315 GLN n 1 316 HIS n 1 317 ARG n 1 318 ASP n 1 319 PHE n 1 320 LYS n 1 321 ASP n 1 322 VAL n 1 323 GLU n 1 324 ALA n 1 325 ALA n 1 326 LEU n 1 327 HIS n 1 328 ALA n 1 329 MSE n 1 330 LYS n 1 331 ASN n 1 332 VAL n 1 333 ALA n 1 334 GLN n 1 335 LEU n 1 336 ILE n 1 337 ASN n 1 338 GLU n 1 339 ARG n 1 340 LYS n 1 341 ARG n 1 342 ARG n 1 343 LEU n 1 344 GLU n 1 345 ASN n 1 346 ILE n 1 347 ASP n 1 348 LYS n 1 349 ILE n 1 350 ALA n 1 351 GLN n 1 352 TRP n 1 353 GLN n 1 354 SER n 1 355 SER n 1 356 ILE n 1 357 GLU n 1 358 ASP n 1 359 TRP n 1 360 GLU n 1 361 GLY n 1 362 GLU n 1 363 ASP n 1 364 LEU n 1 365 LEU n 1 366 VAL n 1 367 ARG n 1 368 SER n 1 369 SER n 1 370 GLU n 1 371 LEU n 1 372 ILE n 1 373 TYR n 1 374 SER n 1 375 GLY n 1 376 GLU n 1 377 LEU n 1 378 THR n 1 379 ARG n 1 380 VAL n 1 381 THR n 1 382 GLN n 1 383 PRO n 1 384 GLN n 1 385 ALA n 1 386 LYS n 1 387 SER n 1 388 GLN n 1 389 GLN n 1 390 ARG n 1 391 MSE n 1 392 PHE n 1 393 PHE n 1 394 LEU n 1 395 PHE n 1 396 ASP n 1 397 HIS n 1 398 GLN n 1 399 LEU n 1 400 ILE n 1 401 TYR n 1 402 CYS n 1 403 LYS n 1 404 LYS n 1 405 ASP n 1 406 LEU n 1 407 LEU n 1 408 ARG n 1 409 ARG n 1 410 ASP n 1 411 VAL n 1 412 LEU n 1 413 TYR n 1 414 TYR n 1 415 LYS n 1 416 GLY n 1 417 ARG n 1 418 LEU n 1 419 ASP n 1 420 MSE n 1 421 ASP n 1 422 GLY n 1 423 LEU n 1 424 GLU n 1 425 VAL n 1 426 VAL n 1 427 ASP n 1 428 LEU n 1 429 GLU n 1 430 ASP n 1 431 GLY n 1 432 LYS n 1 433 ASP n 1 434 ARG n 1 435 ASP n 1 436 LEU n 1 437 HIS n 1 438 VAL n 1 439 SER n 1 440 ILE n 1 441 LYS n 1 442 ASN n 1 443 ALA n 1 444 PHE n 1 445 ARG n 1 446 LEU n 1 447 HIS n 1 448 ARG n 1 449 GLY n 1 450 ALA n 1 451 THR n 1 452 GLY n 1 453 ASP n 1 454 SER n 1 455 HIS n 1 456 LEU n 1 457 LEU n 1 458 CYS n 1 459 THR n 1 460 ARG n 1 461 LYS n 1 462 PRO n 1 463 GLU n 1 464 GLN n 1 465 LYS n 1 466 GLN n 1 467 ARG n 1 468 TRP n 1 469 LEU n 1 470 LYS n 1 471 ALA n 1 472 PHE n 1 473 ALA n 1 474 ARG n 1 475 GLU n 1 476 ARG n 1 477 GLU n 1 478 GLN n 1 479 VAL n 1 480 GLN n 1 481 LEU n 1 482 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'CELL FREE PROTEIN SYNTHESIS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PX041202-06-MD01 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ARHG4_HUMAN _struct_ref.pdbx_db_accession Q9NR80 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DGTCTGAMPDGALDTAVCADEVGSEEDLYDDLHSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFK AGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKDQMRTNVINEILSTE RDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADFQIYS EYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALH AMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLL RRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLD ; _struct_ref.pdbx_align_begin 66 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DX1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 482 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NR80 _struct_ref_seq.db_align_beg 66 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 540 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 66 _struct_ref_seq.pdbx_auth_seq_align_end 540 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DX1 GLY A 1 ? UNP Q9NR80 ? ? 'EXPRESSION TAG' 59 1 1 2DX1 SER A 2 ? UNP Q9NR80 ? ? 'EXPRESSION TAG' 60 2 1 2DX1 SER A 3 ? UNP Q9NR80 ? ? 'EXPRESSION TAG' 61 3 1 2DX1 GLY A 4 ? UNP Q9NR80 ? ? 'EXPRESSION TAG' 62 4 1 2DX1 SER A 5 ? UNP Q9NR80 ? ? 'EXPRESSION TAG' 63 5 1 2DX1 SER A 6 ? UNP Q9NR80 ? ? 'EXPRESSION TAG' 64 6 1 2DX1 GLY A 7 ? UNP Q9NR80 ? ? 'EXPRESSION TAG' 65 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DX1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '20% PEG3350, 0.2M MgCl2, 0.1M HEPES-HCl buffer, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-06-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9789 1.0 2 0.9794 1.0 3 0.9640 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9789, 0.9794, 0.9640' # _reflns.entry_id 2DX1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F -3.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.36 _reflns.number_obs 18703 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 36.2 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.36 _reflns_shell.d_res_low 2.44 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DX1 _refine.ls_number_reflns_obs 18635 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1381375.72 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.61 _refine.ls_d_res_high 2.36 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.232 _refine.ls_R_factor_R_free 0.299 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1834 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 53.5 _refine.aniso_B[1][1] 7.98 _refine.aniso_B[2][2] -1.65 _refine.aniso_B[3][3] -6.34 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 6.40 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.322373 _refine.solvent_model_param_bsol 39.643 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DX1 _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.31 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.49 _refine_analyze.Luzzati_sigma_a_free 0.45 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3202 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 64 _refine_hist.number_atoms_total 3266 _refine_hist.d_res_high 2.36 _refine_hist.d_res_low 34.61 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.4 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.83 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.99 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.67 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.19 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 7.74 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.36 _refine_ls_shell.d_res_low 2.51 _refine_ls_shell.number_reflns_R_work 2779 _refine_ls_shell.R_factor_R_work 0.325 _refine_ls_shell.percent_reflns_obs 100.0 _refine_ls_shell.R_factor_R_free 0.393 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 10.0 _refine_ls_shell.number_reflns_R_free 309 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2DX1 _struct.title 'Crystal structure of RhoGEF protein Asef' _struct.pdbx_descriptor 'Rho guanine nucleotide exchange factor 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DX1 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;Rho-GEF, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 57 ? GLY A 65 ? ALA A 115 GLY A 123 1 ? 9 HELX_P HELX_P2 2 GLN A 149 ? TYR A 181 ? GLN A 207 TYR A 239 1 ? 33 HELX_P HELX_P3 3 TYR A 181 ? ARG A 186 ? TYR A 239 ARG A 244 1 ? 6 HELX_P HELX_P4 4 SER A 193 ? GLY A 202 ? SER A 251 GLY A 260 1 ? 10 HELX_P HELX_P5 5 ASN A 203 ? GLN A 220 ? ASN A 261 GLN A 278 1 ? 18 HELX_P HELX_P6 6 ARG A 226 ? SER A 230 ? ARG A 284 SER A 288 5 ? 5 HELX_P HELX_P7 7 LEU A 232 ? HIS A 239 ? LEU A 290 HIS A 297 1 ? 8 HELX_P HELX_P8 8 HIS A 239 ? ILE A 245 ? HIS A 297 ILE A 303 1 ? 7 HELX_P HELX_P9 9 ILE A 245 ? LYS A 265 ? ILE A 303 LYS A 323 1 ? 21 HELX_P HELX_P10 10 LEU A 266 ? LYS A 281 ? LEU A 324 LYS A 339 1 ? 16 HELX_P HELX_P11 11 SER A 286 ? TYR A 311 ? SER A 344 TYR A 369 1 ? 26 HELX_P HELX_P12 12 ASP A 318 ? ILE A 356 ? ASP A 376 ILE A 414 1 ? 39 HELX_P HELX_P13 13 ASP A 363 ? SER A 368 ? ASP A 421 SER A 426 1 ? 6 HELX_P HELX_P14 14 LYS A 461 ? GLN A 480 ? LYS A 519 GLN A 538 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 78 C ? ? ? 1_555 A MSE 79 N ? ? A THR 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 79 C ? ? ? 1_555 A ASP 80 N ? ? A MSE 137 A ASP 138 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A VAL 94 C ? ? ? 1_555 A MSE 95 N ? ? A VAL 152 A MSE 153 1_555 ? ? ? ? ? ? ? 1.325 ? covale4 covale ? ? A MSE 95 C ? ? ? 1_555 A ASP 96 N ? ? A MSE 153 A ASP 154 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A GLN 154 C ? ? ? 1_555 A MSE 155 N ? ? A GLN 212 A MSE 213 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A MSE 155 C ? ? ? 1_555 A ARG 156 N ? ? A MSE 213 A ARG 214 1_555 ? ? ? ? ? ? ? 1.335 ? covale7 covale ? ? A ASP 190 C ? ? ? 1_555 A MSE 191 N ? ? A ASP 248 A MSE 249 1_555 ? ? ? ? ? ? ? 1.323 ? covale8 covale ? ? A MSE 191 C ? ? ? 1_555 A PHE 192 N ? ? A MSE 249 A PHE 250 1_555 ? ? ? ? ? ? ? 1.323 ? covale9 covale ? ? A LYS 281 C ? ? ? 1_555 A MSE 282 N ? ? A LYS 339 A MSE 340 1_555 ? ? ? ? ? ? ? 1.322 ? covale10 covale ? ? A MSE 282 C ? ? ? 1_555 A ILE 283 N ? ? A MSE 340 A ILE 341 1_555 ? ? ? ? ? ? ? 1.330 ? covale11 covale ? ? A ALA 328 C ? ? ? 1_555 A MSE 329 N ? ? A ALA 386 A MSE 387 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? A MSE 329 C ? ? ? 1_555 A LYS 330 N ? ? A MSE 387 A LYS 388 1_555 ? ? ? ? ? ? ? 1.325 ? covale13 covale ? ? A ARG 390 C ? ? ? 1_555 A MSE 391 N ? ? A ARG 448 A MSE 449 1_555 ? ? ? ? ? ? ? 1.324 ? covale14 covale ? ? A MSE 391 C ? ? ? 1_555 A PHE 392 N ? ? A MSE 449 A PHE 450 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? A ASP 419 C ? ? ? 1_555 A MSE 420 N ? ? A ASP 477 A MSE 478 1_555 ? ? ? ? ? ? ? 1.323 ? covale16 covale ? ? A MSE 420 C ? ? ? 1_555 A ASP 421 N ? ? A MSE 478 A ASP 479 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 111 ? PRO A 115 ? GLU A 169 PRO A 173 A 2 TRP A 102 ? ARG A 106 ? TRP A 160 ARG A 164 A 3 VAL A 91 ? ASP A 96 ? VAL A 149 ASP A 154 A 4 VAL A 68 ? ALA A 72 ? VAL A 126 ALA A 130 A 5 VAL A 119 ? LEU A 121 ? VAL A 177 LEU A 179 B 1 LEU A 412 ? ASP A 419 ? LEU A 470 ASP A 477 B 2 GLN A 398 ? LYS A 404 ? GLN A 456 LYS A 462 B 3 SER A 387 ? PHE A 395 ? SER A 445 PHE A 453 B 4 LEU A 371 ? VAL A 380 ? LEU A 429 VAL A 438 B 5 HIS A 455 ? CYS A 458 ? HIS A 513 CYS A 516 B 6 LYS A 441 ? ARG A 445 ? LYS A 499 ARG A 503 B 7 GLU A 424 ? VAL A 426 ? GLU A 482 VAL A 484 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 112 ? O GLY A 170 N GLY A 105 ? N GLY A 163 A 2 3 O ARG A 106 ? O ARG A 164 N GLU A 93 ? N GLU A 151 A 3 4 O VAL A 94 ? O VAL A 152 N VAL A 68 ? N VAL A 126 A 4 5 N GLU A 71 ? N GLU A 129 O ARG A 120 ? O ARG A 178 B 1 2 O TYR A 413 ? O TYR A 471 N LYS A 403 ? N LYS A 461 B 2 3 O ILE A 400 ? O ILE A 458 N PHE A 393 ? N PHE A 451 B 3 4 O ARG A 390 ? O ARG A 448 N LEU A 377 ? N LEU A 435 B 4 5 N THR A 378 ? N THR A 436 O CYS A 458 ? O CYS A 516 B 5 6 O LEU A 457 ? O LEU A 515 N ASN A 442 ? N ASN A 500 B 6 7 O ARG A 445 ? O ARG A 503 N GLU A 424 ? N GLU A 482 # _database_PDB_matrix.entry_id 2DX1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DX1 _atom_sites.fract_transf_matrix[1][1] 0.009908 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006495 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012529 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017583 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 59 ? ? ? A . n A 1 2 SER 2 60 ? ? ? A . n A 1 3 SER 3 61 ? ? ? A . n A 1 4 GLY 4 62 ? ? ? A . n A 1 5 SER 5 63 ? ? ? A . n A 1 6 SER 6 64 ? ? ? A . n A 1 7 GLY 7 65 ? ? ? A . n A 1 8 ASP 8 66 ? ? ? A . n A 1 9 GLY 9 67 ? ? ? A . n A 1 10 THR 10 68 ? ? ? A . n A 1 11 CYS 11 69 ? ? ? A . n A 1 12 THR 12 70 ? ? ? A . n A 1 13 GLY 13 71 ? ? ? A . n A 1 14 ALA 14 72 ? ? ? A . n A 1 15 MSE 15 73 ? ? ? A . n A 1 16 PRO 16 74 ? ? ? A . n A 1 17 ASP 17 75 ? ? ? A . n A 1 18 GLY 18 76 ? ? ? A . n A 1 19 ALA 19 77 ? ? ? A . n A 1 20 LEU 20 78 ? ? ? A . n A 1 21 ASP 21 79 ? ? ? A . n A 1 22 THR 22 80 ? ? ? A . n A 1 23 ALA 23 81 ? ? ? A . n A 1 24 VAL 24 82 ? ? ? A . n A 1 25 CYS 25 83 ? ? ? A . n A 1 26 ALA 26 84 ? ? ? A . n A 1 27 ASP 27 85 ? ? ? A . n A 1 28 GLU 28 86 ? ? ? A . n A 1 29 VAL 29 87 ? ? ? A . n A 1 30 GLY 30 88 ? ? ? A . n A 1 31 SER 31 89 ? ? ? A . n A 1 32 GLU 32 90 ? ? ? A . n A 1 33 GLU 33 91 ? ? ? A . n A 1 34 ASP 34 92 ? ? ? A . n A 1 35 LEU 35 93 ? ? ? A . n A 1 36 TYR 36 94 ? ? ? A . n A 1 37 ASP 37 95 ? ? ? A . n A 1 38 ASP 38 96 ? ? ? A . n A 1 39 LEU 39 97 ? ? ? A . n A 1 40 HIS 40 98 ? ? ? A . n A 1 41 SER 41 99 ? ? ? A . n A 1 42 SER 42 100 ? ? ? A . n A 1 43 SER 43 101 ? ? ? A . n A 1 44 HIS 44 102 ? ? ? A . n A 1 45 HIS 45 103 ? ? ? A . n A 1 46 TYR 46 104 ? ? ? A . n A 1 47 SER 47 105 ? ? ? A . n A 1 48 HIS 48 106 ? ? ? A . n A 1 49 PRO 49 107 ? ? ? A . n A 1 50 GLY 50 108 ? ? ? A . n A 1 51 GLY 51 109 ? ? ? A . n A 1 52 GLY 52 110 ? ? ? A . n A 1 53 GLY 53 111 ? ? ? A . n A 1 54 GLU 54 112 ? ? ? A . n A 1 55 GLN 55 113 ? ? ? A . n A 1 56 LEU 56 114 114 LEU LEU A . n A 1 57 ALA 57 115 115 ALA ALA A . n A 1 58 ILE 58 116 116 ILE ILE A . n A 1 59 ASN 59 117 117 ASN ASN A . n A 1 60 GLU 60 118 118 GLU GLU A . n A 1 61 LEU 61 119 119 LEU LEU A . n A 1 62 ILE 62 120 120 ILE ILE A . n A 1 63 SER 63 121 121 SER SER A . n A 1 64 ASP 64 122 122 ASP ASP A . n A 1 65 GLY 65 123 123 GLY GLY A . n A 1 66 SER 66 124 124 SER SER A . n A 1 67 VAL 67 125 125 VAL VAL A . n A 1 68 VAL 68 126 126 VAL VAL A . n A 1 69 CYS 69 127 127 CYS CYS A . n A 1 70 ALA 70 128 128 ALA ALA A . n A 1 71 GLU 71 129 129 GLU GLU A . n A 1 72 ALA 72 130 130 ALA ALA A . n A 1 73 LEU 73 131 131 LEU LEU A . n A 1 74 TRP 74 132 132 TRP TRP A . n A 1 75 ASP 75 133 133 ASP ASP A . n A 1 76 HIS 76 134 134 HIS HIS A . n A 1 77 VAL 77 135 135 VAL VAL A . n A 1 78 THR 78 136 136 THR THR A . n A 1 79 MSE 79 137 137 MSE MSE A . n A 1 80 ASP 80 138 138 ASP ASP A . n A 1 81 ASP 81 139 139 ASP ASP A . n A 1 82 GLN 82 140 140 GLN GLN A . n A 1 83 GLU 83 141 141 GLU GLU A . n A 1 84 LEU 84 142 142 LEU LEU A . n A 1 85 GLY 85 143 143 GLY GLY A . n A 1 86 PHE 86 144 144 PHE PHE A . n A 1 87 LYS 87 145 145 LYS LYS A . n A 1 88 ALA 88 146 146 ALA ALA A . n A 1 89 GLY 89 147 147 GLY GLY A . n A 1 90 ASP 90 148 148 ASP ASP A . n A 1 91 VAL 91 149 149 VAL VAL A . n A 1 92 ILE 92 150 150 ILE ILE A . n A 1 93 GLU 93 151 151 GLU GLU A . n A 1 94 VAL 94 152 152 VAL VAL A . n A 1 95 MSE 95 153 153 MSE MSE A . n A 1 96 ASP 96 154 154 ASP ASP A . n A 1 97 ALA 97 155 155 ALA ALA A . n A 1 98 THR 98 156 156 THR THR A . n A 1 99 ASN 99 157 157 ASN ASN A . n A 1 100 ARG 100 158 158 ARG ARG A . n A 1 101 GLU 101 159 159 GLU GLU A . n A 1 102 TRP 102 160 160 TRP TRP A . n A 1 103 TRP 103 161 161 TRP TRP A . n A 1 104 TRP 104 162 162 TRP TRP A . n A 1 105 GLY 105 163 163 GLY GLY A . n A 1 106 ARG 106 164 164 ARG ARG A . n A 1 107 VAL 107 165 165 VAL VAL A . n A 1 108 ALA 108 166 166 ALA ALA A . n A 1 109 ASP 109 167 167 ASP ASP A . n A 1 110 GLY 110 168 168 GLY GLY A . n A 1 111 GLU 111 169 169 GLU GLU A . n A 1 112 GLY 112 170 170 GLY GLY A . n A 1 113 TRP 113 171 171 TRP TRP A . n A 1 114 PHE 114 172 172 PHE PHE A . n A 1 115 PRO 115 173 173 PRO PRO A . n A 1 116 ALA 116 174 174 ALA ALA A . n A 1 117 SER 117 175 175 SER SER A . n A 1 118 PHE 118 176 176 PHE PHE A . n A 1 119 VAL 119 177 177 VAL VAL A . n A 1 120 ARG 120 178 178 ARG ARG A . n A 1 121 LEU 121 179 179 LEU LEU A . n A 1 122 ARG 122 180 180 ARG ARG A . n A 1 123 VAL 123 181 181 VAL VAL A . n A 1 124 ASN 124 182 182 ASN ASN A . n A 1 125 GLN 125 183 183 GLN GLN A . n A 1 126 ASP 126 184 184 ASP ASP A . n A 1 127 GLU 127 185 ? ? ? A . n A 1 128 PRO 128 186 ? ? ? A . n A 1 129 ALA 129 187 ? ? ? A . n A 1 130 ASP 130 188 ? ? ? A . n A 1 131 ASP 131 189 ? ? ? A . n A 1 132 ASP 132 190 ? ? ? A . n A 1 133 ALA 133 191 ? ? ? A . n A 1 134 PRO 134 192 ? ? ? A . n A 1 135 LEU 135 193 ? ? ? A . n A 1 136 ALA 136 194 ? ? ? A . n A 1 137 GLY 137 195 ? ? ? A . n A 1 138 ASN 138 196 ? ? ? A . n A 1 139 SER 139 197 ? ? ? A . n A 1 140 GLY 140 198 ? ? ? A . n A 1 141 ALA 141 199 ? ? ? A . n A 1 142 GLU 142 200 ? ? ? A . n A 1 143 ASP 143 201 ? ? ? A . n A 1 144 GLY 144 202 ? ? ? A . n A 1 145 GLY 145 203 ? ? ? A . n A 1 146 ALA 146 204 ? ? ? A . n A 1 147 GLU 147 205 ? ? ? A . n A 1 148 ALA 148 206 206 ALA ALA A . n A 1 149 GLN 149 207 207 GLN GLN A . n A 1 150 SER 150 208 208 SER SER A . n A 1 151 SER 151 209 209 SER SER A . n A 1 152 LYS 152 210 210 LYS LYS A . n A 1 153 ASP 153 211 211 ASP ASP A . n A 1 154 GLN 154 212 212 GLN GLN A . n A 1 155 MSE 155 213 213 MSE MSE A . n A 1 156 ARG 156 214 214 ARG ARG A . n A 1 157 THR 157 215 215 THR THR A . n A 1 158 ASN 158 216 216 ASN ASN A . n A 1 159 VAL 159 217 217 VAL VAL A . n A 1 160 ILE 160 218 218 ILE ILE A . n A 1 161 ASN 161 219 219 ASN ASN A . n A 1 162 GLU 162 220 220 GLU GLU A . n A 1 163 ILE 163 221 221 ILE ILE A . n A 1 164 LEU 164 222 222 LEU LEU A . n A 1 165 SER 165 223 223 SER SER A . n A 1 166 THR 166 224 224 THR THR A . n A 1 167 GLU 167 225 225 GLU GLU A . n A 1 168 ARG 168 226 226 ARG ARG A . n A 1 169 ASP 169 227 227 ASP ASP A . n A 1 170 TYR 170 228 228 TYR TYR A . n A 1 171 ILE 171 229 229 ILE ILE A . n A 1 172 LYS 172 230 230 LYS LYS A . n A 1 173 HIS 173 231 231 HIS HIS A . n A 1 174 LEU 174 232 232 LEU LEU A . n A 1 175 ARG 175 233 233 ARG ARG A . n A 1 176 ASP 176 234 234 ASP ASP A . n A 1 177 ILE 177 235 235 ILE ILE A . n A 1 178 CYS 178 236 236 CYS CYS A . n A 1 179 GLU 179 237 237 GLU GLU A . n A 1 180 GLY 180 238 238 GLY GLY A . n A 1 181 TYR 181 239 239 TYR TYR A . n A 1 182 VAL 182 240 240 VAL VAL A . n A 1 183 ARG 183 241 241 ARG ARG A . n A 1 184 GLN 184 242 242 GLN GLN A . n A 1 185 CYS 185 243 243 CYS CYS A . n A 1 186 ARG 186 244 244 ARG ARG A . n A 1 187 LYS 187 245 245 LYS LYS A . n A 1 188 ARG 188 246 246 ARG ARG A . n A 1 189 ALA 189 247 247 ALA ALA A . n A 1 190 ASP 190 248 248 ASP ASP A . n A 1 191 MSE 191 249 249 MSE MSE A . n A 1 192 PHE 192 250 250 PHE PHE A . n A 1 193 SER 193 251 251 SER SER A . n A 1 194 GLU 194 252 252 GLU GLU A . n A 1 195 GLU 195 253 253 GLU GLU A . n A 1 196 GLN 196 254 254 GLN GLN A . n A 1 197 LEU 197 255 255 LEU LEU A . n A 1 198 ARG 198 256 256 ARG ARG A . n A 1 199 THR 199 257 257 THR THR A . n A 1 200 ILE 200 258 258 ILE ILE A . n A 1 201 PHE 201 259 259 PHE PHE A . n A 1 202 GLY 202 260 260 GLY GLY A . n A 1 203 ASN 203 261 261 ASN ASN A . n A 1 204 ILE 204 262 262 ILE ILE A . n A 1 205 GLU 205 263 263 GLU GLU A . n A 1 206 ASP 206 264 264 ASP ASP A . n A 1 207 ILE 207 265 265 ILE ILE A . n A 1 208 TYR 208 266 266 TYR TYR A . n A 1 209 ARG 209 267 267 ARG ARG A . n A 1 210 CYS 210 268 268 CYS CYS A . n A 1 211 GLN 211 269 269 GLN GLN A . n A 1 212 LYS 212 270 270 LYS LYS A . n A 1 213 ALA 213 271 271 ALA ALA A . n A 1 214 PHE 214 272 272 PHE PHE A . n A 1 215 VAL 215 273 273 VAL VAL A . n A 1 216 LYS 216 274 274 LYS LYS A . n A 1 217 ALA 217 275 275 ALA ALA A . n A 1 218 LEU 218 276 276 LEU LEU A . n A 1 219 GLU 219 277 277 GLU GLU A . n A 1 220 GLN 220 278 278 GLN GLN A . n A 1 221 ARG 221 279 279 ARG ARG A . n A 1 222 PHE 222 280 280 PHE PHE A . n A 1 223 ASN 223 281 281 ASN ASN A . n A 1 224 ARG 224 282 282 ARG ARG A . n A 1 225 GLU 225 283 283 GLU GLU A . n A 1 226 ARG 226 284 284 ARG ARG A . n A 1 227 PRO 227 285 285 PRO PRO A . n A 1 228 HIS 228 286 286 HIS HIS A . n A 1 229 LEU 229 287 287 LEU LEU A . n A 1 230 SER 230 288 288 SER SER A . n A 1 231 GLU 231 289 289 GLU GLU A . n A 1 232 LEU 232 290 290 LEU LEU A . n A 1 233 GLY 233 291 291 GLY GLY A . n A 1 234 ALA 234 292 292 ALA ALA A . n A 1 235 CYS 235 293 293 CYS CYS A . n A 1 236 PHE 236 294 294 PHE PHE A . n A 1 237 LEU 237 295 295 LEU LEU A . n A 1 238 GLU 238 296 296 GLU GLU A . n A 1 239 HIS 239 297 297 HIS HIS A . n A 1 240 GLN 240 298 298 GLN GLN A . n A 1 241 ALA 241 299 299 ALA ALA A . n A 1 242 ASP 242 300 300 ASP ASP A . n A 1 243 PHE 243 301 301 PHE PHE A . n A 1 244 GLN 244 302 302 GLN GLN A . n A 1 245 ILE 245 303 303 ILE ILE A . n A 1 246 TYR 246 304 304 TYR TYR A . n A 1 247 SER 247 305 305 SER SER A . n A 1 248 GLU 248 306 306 GLU GLU A . n A 1 249 TYR 249 307 307 TYR TYR A . n A 1 250 CYS 250 308 308 CYS CYS A . n A 1 251 ASN 251 309 309 ASN ASN A . n A 1 252 ASN 252 310 310 ASN ASN A . n A 1 253 HIS 253 311 311 HIS HIS A . n A 1 254 PRO 254 312 312 PRO PRO A . n A 1 255 ASN 255 313 313 ASN ASN A . n A 1 256 ALA 256 314 314 ALA ALA A . n A 1 257 CYS 257 315 315 CYS CYS A . n A 1 258 VAL 258 316 316 VAL VAL A . n A 1 259 GLU 259 317 317 GLU GLU A . n A 1 260 LEU 260 318 318 LEU LEU A . n A 1 261 SER 261 319 319 SER SER A . n A 1 262 ARG 262 320 320 ARG ARG A . n A 1 263 LEU 263 321 321 LEU LEU A . n A 1 264 THR 264 322 322 THR THR A . n A 1 265 LYS 265 323 323 LYS LYS A . n A 1 266 LEU 266 324 324 LEU LEU A . n A 1 267 SER 267 325 325 SER SER A . n A 1 268 LYS 268 326 326 LYS LYS A . n A 1 269 TYR 269 327 327 TYR TYR A . n A 1 270 VAL 270 328 328 VAL VAL A . n A 1 271 TYR 271 329 329 TYR TYR A . n A 1 272 PHE 272 330 330 PHE PHE A . n A 1 273 PHE 273 331 331 PHE PHE A . n A 1 274 GLU 274 332 332 GLU GLU A . n A 1 275 ALA 275 333 333 ALA ALA A . n A 1 276 CYS 276 334 334 CYS CYS A . n A 1 277 ARG 277 335 335 ARG ARG A . n A 1 278 LEU 278 336 336 LEU LEU A . n A 1 279 LEU 279 337 337 LEU LEU A . n A 1 280 GLN 280 338 338 GLN GLN A . n A 1 281 LYS 281 339 339 LYS LYS A . n A 1 282 MSE 282 340 340 MSE MSE A . n A 1 283 ILE 283 341 341 ILE ILE A . n A 1 284 ASP 284 342 342 ASP ASP A . n A 1 285 ILE 285 343 343 ILE ILE A . n A 1 286 SER 286 344 344 SER SER A . n A 1 287 LEU 287 345 345 LEU LEU A . n A 1 288 ASP 288 346 346 ASP ASP A . n A 1 289 GLY 289 347 347 GLY GLY A . n A 1 290 PHE 290 348 348 PHE PHE A . n A 1 291 LEU 291 349 349 LEU LEU A . n A 1 292 LEU 292 350 350 LEU LEU A . n A 1 293 THR 293 351 351 THR THR A . n A 1 294 PRO 294 352 352 PRO PRO A . n A 1 295 VAL 295 353 353 VAL VAL A . n A 1 296 GLN 296 354 354 GLN GLN A . n A 1 297 LYS 297 355 355 LYS LYS A . n A 1 298 ILE 298 356 356 ILE ILE A . n A 1 299 CYS 299 357 357 CYS CYS A . n A 1 300 LYS 300 358 358 LYS LYS A . n A 1 301 TYR 301 359 359 TYR TYR A . n A 1 302 PRO 302 360 360 PRO PRO A . n A 1 303 LEU 303 361 361 LEU LEU A . n A 1 304 GLN 304 362 362 GLN GLN A . n A 1 305 LEU 305 363 363 LEU LEU A . n A 1 306 ALA 306 364 364 ALA ALA A . n A 1 307 GLU 307 365 365 GLU GLU A . n A 1 308 LEU 308 366 366 LEU LEU A . n A 1 309 LEU 309 367 367 LEU LEU A . n A 1 310 LYS 310 368 368 LYS LYS A . n A 1 311 TYR 311 369 369 TYR TYR A . n A 1 312 THR 312 370 370 THR THR A . n A 1 313 HIS 313 371 371 HIS HIS A . n A 1 314 PRO 314 372 372 PRO PRO A . n A 1 315 GLN 315 373 373 GLN GLN A . n A 1 316 HIS 316 374 374 HIS HIS A . n A 1 317 ARG 317 375 375 ARG ARG A . n A 1 318 ASP 318 376 376 ASP ASP A . n A 1 319 PHE 319 377 377 PHE PHE A . n A 1 320 LYS 320 378 378 LYS LYS A . n A 1 321 ASP 321 379 379 ASP ASP A . n A 1 322 VAL 322 380 380 VAL VAL A . n A 1 323 GLU 323 381 381 GLU GLU A . n A 1 324 ALA 324 382 382 ALA ALA A . n A 1 325 ALA 325 383 383 ALA ALA A . n A 1 326 LEU 326 384 384 LEU LEU A . n A 1 327 HIS 327 385 385 HIS HIS A . n A 1 328 ALA 328 386 386 ALA ALA A . n A 1 329 MSE 329 387 387 MSE MSE A . n A 1 330 LYS 330 388 388 LYS LYS A . n A 1 331 ASN 331 389 389 ASN ASN A . n A 1 332 VAL 332 390 390 VAL VAL A . n A 1 333 ALA 333 391 391 ALA ALA A . n A 1 334 GLN 334 392 392 GLN GLN A . n A 1 335 LEU 335 393 393 LEU LEU A . n A 1 336 ILE 336 394 394 ILE ILE A . n A 1 337 ASN 337 395 395 ASN ASN A . n A 1 338 GLU 338 396 396 GLU GLU A . n A 1 339 ARG 339 397 397 ARG ARG A . n A 1 340 LYS 340 398 398 LYS LYS A . n A 1 341 ARG 341 399 399 ARG ARG A . n A 1 342 ARG 342 400 400 ARG ARG A . n A 1 343 LEU 343 401 401 LEU LEU A . n A 1 344 GLU 344 402 402 GLU GLU A . n A 1 345 ASN 345 403 403 ASN ASN A . n A 1 346 ILE 346 404 404 ILE ILE A . n A 1 347 ASP 347 405 405 ASP ASP A . n A 1 348 LYS 348 406 406 LYS LYS A . n A 1 349 ILE 349 407 407 ILE ILE A . n A 1 350 ALA 350 408 408 ALA ALA A . n A 1 351 GLN 351 409 409 GLN GLN A . n A 1 352 TRP 352 410 410 TRP TRP A . n A 1 353 GLN 353 411 411 GLN GLN A . n A 1 354 SER 354 412 412 SER SER A . n A 1 355 SER 355 413 413 SER SER A . n A 1 356 ILE 356 414 414 ILE ILE A . n A 1 357 GLU 357 415 415 GLU GLU A . n A 1 358 ASP 358 416 416 ASP ASP A . n A 1 359 TRP 359 417 417 TRP TRP A . n A 1 360 GLU 360 418 418 GLU GLU A . n A 1 361 GLY 361 419 419 GLY GLY A . n A 1 362 GLU 362 420 420 GLU GLU A . n A 1 363 ASP 363 421 421 ASP ASP A . n A 1 364 LEU 364 422 422 LEU LEU A . n A 1 365 LEU 365 423 423 LEU LEU A . n A 1 366 VAL 366 424 424 VAL VAL A . n A 1 367 ARG 367 425 425 ARG ARG A . n A 1 368 SER 368 426 426 SER SER A . n A 1 369 SER 369 427 427 SER SER A . n A 1 370 GLU 370 428 428 GLU GLU A . n A 1 371 LEU 371 429 429 LEU LEU A . n A 1 372 ILE 372 430 430 ILE ILE A . n A 1 373 TYR 373 431 431 TYR TYR A . n A 1 374 SER 374 432 432 SER SER A . n A 1 375 GLY 375 433 433 GLY GLY A . n A 1 376 GLU 376 434 434 GLU GLU A . n A 1 377 LEU 377 435 435 LEU LEU A . n A 1 378 THR 378 436 436 THR THR A . n A 1 379 ARG 379 437 437 ARG ARG A . n A 1 380 VAL 380 438 438 VAL VAL A . n A 1 381 THR 381 439 439 THR THR A . n A 1 382 GLN 382 440 440 GLN GLN A . n A 1 383 PRO 383 441 441 PRO PRO A . n A 1 384 GLN 384 442 442 GLN GLN A . n A 1 385 ALA 385 443 443 ALA ALA A . n A 1 386 LYS 386 444 444 LYS LYS A . n A 1 387 SER 387 445 445 SER SER A . n A 1 388 GLN 388 446 446 GLN GLN A . n A 1 389 GLN 389 447 447 GLN GLN A . n A 1 390 ARG 390 448 448 ARG ARG A . n A 1 391 MSE 391 449 449 MSE MSE A . n A 1 392 PHE 392 450 450 PHE PHE A . n A 1 393 PHE 393 451 451 PHE PHE A . n A 1 394 LEU 394 452 452 LEU LEU A . n A 1 395 PHE 395 453 453 PHE PHE A . n A 1 396 ASP 396 454 454 ASP ASP A . n A 1 397 HIS 397 455 455 HIS HIS A . n A 1 398 GLN 398 456 456 GLN GLN A . n A 1 399 LEU 399 457 457 LEU LEU A . n A 1 400 ILE 400 458 458 ILE ILE A . n A 1 401 TYR 401 459 459 TYR TYR A . n A 1 402 CYS 402 460 460 CYS CYS A . n A 1 403 LYS 403 461 461 LYS LYS A . n A 1 404 LYS 404 462 462 LYS LYS A . n A 1 405 ASP 405 463 463 ASP ASP A . n A 1 406 LEU 406 464 464 LEU LEU A . n A 1 407 LEU 407 465 465 LEU LEU A . n A 1 408 ARG 408 466 466 ARG ARG A . n A 1 409 ARG 409 467 467 ARG ARG A . n A 1 410 ASP 410 468 468 ASP ASP A . n A 1 411 VAL 411 469 469 VAL VAL A . n A 1 412 LEU 412 470 470 LEU LEU A . n A 1 413 TYR 413 471 471 TYR TYR A . n A 1 414 TYR 414 472 472 TYR TYR A . n A 1 415 LYS 415 473 473 LYS LYS A . n A 1 416 GLY 416 474 474 GLY GLY A . n A 1 417 ARG 417 475 475 ARG ARG A . n A 1 418 LEU 418 476 476 LEU LEU A . n A 1 419 ASP 419 477 477 ASP ASP A . n A 1 420 MSE 420 478 478 MSE MSE A . n A 1 421 ASP 421 479 479 ASP ASP A . n A 1 422 GLY 422 480 480 GLY GLY A . n A 1 423 LEU 423 481 481 LEU LEU A . n A 1 424 GLU 424 482 482 GLU GLU A . n A 1 425 VAL 425 483 483 VAL VAL A . n A 1 426 VAL 426 484 484 VAL VAL A . n A 1 427 ASP 427 485 ? ? ? A . n A 1 428 LEU 428 486 ? ? ? A . n A 1 429 GLU 429 487 ? ? ? A . n A 1 430 ASP 430 488 ? ? ? A . n A 1 431 GLY 431 489 ? ? ? A . n A 1 432 LYS 432 490 ? ? ? A . n A 1 433 ASP 433 491 ? ? ? A . n A 1 434 ARG 434 492 ? ? ? A . n A 1 435 ASP 435 493 ? ? ? A . n A 1 436 LEU 436 494 ? ? ? A . n A 1 437 HIS 437 495 ? ? ? A . n A 1 438 VAL 438 496 ? ? ? A . n A 1 439 SER 439 497 ? ? ? A . n A 1 440 ILE 440 498 498 ILE ILE A . n A 1 441 LYS 441 499 499 LYS LYS A . n A 1 442 ASN 442 500 500 ASN ASN A . n A 1 443 ALA 443 501 501 ALA ALA A . n A 1 444 PHE 444 502 502 PHE PHE A . n A 1 445 ARG 445 503 503 ARG ARG A . n A 1 446 LEU 446 504 504 LEU LEU A . n A 1 447 HIS 447 505 505 HIS HIS A . n A 1 448 ARG 448 506 ? ? ? A . n A 1 449 GLY 449 507 ? ? ? A . n A 1 450 ALA 450 508 ? ? ? A . n A 1 451 THR 451 509 ? ? ? A . n A 1 452 GLY 452 510 ? ? ? A . n A 1 453 ASP 453 511 ? ? ? A . n A 1 454 SER 454 512 512 SER SER A . n A 1 455 HIS 455 513 513 HIS HIS A . n A 1 456 LEU 456 514 514 LEU LEU A . n A 1 457 LEU 457 515 515 LEU LEU A . n A 1 458 CYS 458 516 516 CYS CYS A . n A 1 459 THR 459 517 517 THR THR A . n A 1 460 ARG 460 518 518 ARG ARG A . n A 1 461 LYS 461 519 519 LYS LYS A . n A 1 462 PRO 462 520 520 PRO PRO A . n A 1 463 GLU 463 521 521 GLU GLU A . n A 1 464 GLN 464 522 522 GLN GLN A . n A 1 465 LYS 465 523 523 LYS LYS A . n A 1 466 GLN 466 524 524 GLN GLN A . n A 1 467 ARG 467 525 525 ARG ARG A . n A 1 468 TRP 468 526 526 TRP TRP A . n A 1 469 LEU 469 527 527 LEU LEU A . n A 1 470 LYS 470 528 528 LYS LYS A . n A 1 471 ALA 471 529 529 ALA ALA A . n A 1 472 PHE 472 530 530 PHE PHE A . n A 1 473 ALA 473 531 531 ALA ALA A . n A 1 474 ARG 474 532 532 ARG ARG A . n A 1 475 GLU 475 533 533 GLU GLU A . n A 1 476 ARG 476 534 534 ARG ARG A . n A 1 477 GLU 477 535 535 GLU GLU A . n A 1 478 GLN 478 536 536 GLN GLN A . n A 1 479 VAL 479 537 537 VAL VAL A . n A 1 480 GLN 480 538 538 GLN GLN A . n A 1 481 LEU 481 539 ? ? ? A . n A 1 482 ASP 482 540 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 541 1 HOH TIP A . B 2 HOH 2 542 2 HOH TIP A . B 2 HOH 3 543 3 HOH TIP A . B 2 HOH 4 544 4 HOH TIP A . B 2 HOH 5 545 5 HOH TIP A . B 2 HOH 6 546 6 HOH TIP A . B 2 HOH 7 547 7 HOH TIP A . B 2 HOH 8 548 8 HOH TIP A . B 2 HOH 9 549 9 HOH TIP A . B 2 HOH 10 550 10 HOH TIP A . B 2 HOH 11 551 11 HOH TIP A . B 2 HOH 12 552 12 HOH TIP A . B 2 HOH 13 553 13 HOH TIP A . B 2 HOH 14 554 14 HOH TIP A . B 2 HOH 15 555 15 HOH TIP A . B 2 HOH 16 556 16 HOH TIP A . B 2 HOH 17 557 17 HOH TIP A . B 2 HOH 18 558 18 HOH TIP A . B 2 HOH 19 559 19 HOH TIP A . B 2 HOH 20 560 20 HOH TIP A . B 2 HOH 21 561 21 HOH TIP A . B 2 HOH 22 562 22 HOH TIP A . B 2 HOH 23 563 23 HOH TIP A . B 2 HOH 24 564 24 HOH TIP A . B 2 HOH 25 565 25 HOH TIP A . B 2 HOH 26 566 26 HOH TIP A . B 2 HOH 27 567 27 HOH TIP A . B 2 HOH 28 568 28 HOH TIP A . B 2 HOH 29 569 29 HOH TIP A . B 2 HOH 30 570 30 HOH TIP A . B 2 HOH 31 571 31 HOH TIP A . B 2 HOH 32 572 32 HOH TIP A . B 2 HOH 33 573 33 HOH TIP A . B 2 HOH 34 574 34 HOH TIP A . B 2 HOH 35 575 35 HOH TIP A . B 2 HOH 36 576 36 HOH TIP A . B 2 HOH 37 577 37 HOH TIP A . B 2 HOH 38 578 38 HOH TIP A . B 2 HOH 39 579 39 HOH TIP A . B 2 HOH 40 580 40 HOH TIP A . B 2 HOH 41 581 41 HOH TIP A . B 2 HOH 42 582 42 HOH TIP A . B 2 HOH 43 583 43 HOH TIP A . B 2 HOH 44 584 44 HOH TIP A . B 2 HOH 45 585 45 HOH TIP A . B 2 HOH 46 586 46 HOH TIP A . B 2 HOH 47 587 47 HOH TIP A . B 2 HOH 48 588 48 HOH TIP A . B 2 HOH 49 589 49 HOH TIP A . B 2 HOH 50 590 50 HOH TIP A . B 2 HOH 51 591 51 HOH TIP A . B 2 HOH 52 592 52 HOH TIP A . B 2 HOH 53 593 53 HOH TIP A . B 2 HOH 54 594 54 HOH TIP A . B 2 HOH 55 595 55 HOH TIP A . B 2 HOH 56 596 56 HOH TIP A . B 2 HOH 57 597 57 HOH TIP A . B 2 HOH 58 598 58 HOH TIP A . B 2 HOH 59 599 59 HOH TIP A . B 2 HOH 60 600 60 HOH TIP A . B 2 HOH 61 601 61 HOH TIP A . B 2 HOH 62 602 62 HOH TIP A . B 2 HOH 63 603 63 HOH TIP A . B 2 HOH 64 604 64 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 79 A MSE 137 ? MET SELENOMETHIONINE 2 A MSE 95 A MSE 153 ? MET SELENOMETHIONINE 3 A MSE 155 A MSE 213 ? MET SELENOMETHIONINE 4 A MSE 191 A MSE 249 ? MET SELENOMETHIONINE 5 A MSE 282 A MSE 340 ? MET SELENOMETHIONINE 6 A MSE 329 A MSE 387 ? MET SELENOMETHIONINE 7 A MSE 391 A MSE 449 ? MET SELENOMETHIONINE 8 A MSE 420 A MSE 478 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' QUANTUM ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # _pdbx_entry_details.sequence_details 'THE CORRECT SEQUENCE DATABASE IS Q9NR80-3(ISOFORM 3).' _pdbx_entry_details.entry_id 2DX1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 165 ? ? -122.93 -123.65 2 1 ALA A 166 ? ? -93.82 -69.85 3 1 SER A 175 ? ? -58.53 -6.25 4 1 GLN A 183 ? ? -89.68 -102.05 5 1 TYR A 239 ? ? -109.57 -66.62 6 1 HIS A 286 ? ? -49.42 -13.13 7 1 LEU A 336 ? ? -67.88 4.08 8 1 LYS A 339 ? ? 53.38 76.52 9 1 GLU A 418 ? ? -112.19 -74.06 10 1 SER A 427 ? ? -148.48 -7.08 11 1 THR A 439 ? ? -49.87 109.93 12 1 GLN A 442 ? ? -98.58 -97.64 13 1 ALA A 443 ? ? -174.27 -5.90 14 1 HIS A 455 ? ? 80.24 -18.15 15 1 LEU A 465 ? ? 93.18 28.31 16 1 ARG A 466 ? ? 175.85 52.01 17 1 ARG A 467 ? ? -27.27 -41.50 18 1 ARG A 475 ? ? 179.99 173.33 19 1 LEU A 504 ? ? -153.32 -78.11 20 1 THR A 517 ? ? -120.25 -154.52 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 59 ? A GLY 1 2 1 Y 1 A SER 60 ? A SER 2 3 1 Y 1 A SER 61 ? A SER 3 4 1 Y 1 A GLY 62 ? A GLY 4 5 1 Y 1 A SER 63 ? A SER 5 6 1 Y 1 A SER 64 ? A SER 6 7 1 Y 1 A GLY 65 ? A GLY 7 8 1 Y 1 A ASP 66 ? A ASP 8 9 1 Y 1 A GLY 67 ? A GLY 9 10 1 Y 1 A THR 68 ? A THR 10 11 1 Y 1 A CYS 69 ? A CYS 11 12 1 Y 1 A THR 70 ? A THR 12 13 1 Y 1 A GLY 71 ? A GLY 13 14 1 Y 1 A ALA 72 ? A ALA 14 15 1 Y 1 A MSE 73 ? A MSE 15 16 1 Y 1 A PRO 74 ? A PRO 16 17 1 Y 1 A ASP 75 ? A ASP 17 18 1 Y 1 A GLY 76 ? A GLY 18 19 1 Y 1 A ALA 77 ? A ALA 19 20 1 Y 1 A LEU 78 ? A LEU 20 21 1 Y 1 A ASP 79 ? A ASP 21 22 1 Y 1 A THR 80 ? A THR 22 23 1 Y 1 A ALA 81 ? A ALA 23 24 1 Y 1 A VAL 82 ? A VAL 24 25 1 Y 1 A CYS 83 ? A CYS 25 26 1 Y 1 A ALA 84 ? A ALA 26 27 1 Y 1 A ASP 85 ? A ASP 27 28 1 Y 1 A GLU 86 ? A GLU 28 29 1 Y 1 A VAL 87 ? A VAL 29 30 1 Y 1 A GLY 88 ? A GLY 30 31 1 Y 1 A SER 89 ? A SER 31 32 1 Y 1 A GLU 90 ? A GLU 32 33 1 Y 1 A GLU 91 ? A GLU 33 34 1 Y 1 A ASP 92 ? A ASP 34 35 1 Y 1 A LEU 93 ? A LEU 35 36 1 Y 1 A TYR 94 ? A TYR 36 37 1 Y 1 A ASP 95 ? A ASP 37 38 1 Y 1 A ASP 96 ? A ASP 38 39 1 Y 1 A LEU 97 ? A LEU 39 40 1 Y 1 A HIS 98 ? A HIS 40 41 1 Y 1 A SER 99 ? A SER 41 42 1 Y 1 A SER 100 ? A SER 42 43 1 Y 1 A SER 101 ? A SER 43 44 1 Y 1 A HIS 102 ? A HIS 44 45 1 Y 1 A HIS 103 ? A HIS 45 46 1 Y 1 A TYR 104 ? A TYR 46 47 1 Y 1 A SER 105 ? A SER 47 48 1 Y 1 A HIS 106 ? A HIS 48 49 1 Y 1 A PRO 107 ? A PRO 49 50 1 Y 1 A GLY 108 ? A GLY 50 51 1 Y 1 A GLY 109 ? A GLY 51 52 1 Y 1 A GLY 110 ? A GLY 52 53 1 Y 1 A GLY 111 ? A GLY 53 54 1 Y 1 A GLU 112 ? A GLU 54 55 1 Y 1 A GLN 113 ? A GLN 55 56 1 Y 1 A GLU 185 ? A GLU 127 57 1 Y 1 A PRO 186 ? A PRO 128 58 1 Y 1 A ALA 187 ? A ALA 129 59 1 Y 1 A ASP 188 ? A ASP 130 60 1 Y 1 A ASP 189 ? A ASP 131 61 1 Y 1 A ASP 190 ? A ASP 132 62 1 Y 1 A ALA 191 ? A ALA 133 63 1 Y 1 A PRO 192 ? A PRO 134 64 1 Y 1 A LEU 193 ? A LEU 135 65 1 Y 1 A ALA 194 ? A ALA 136 66 1 Y 1 A GLY 195 ? A GLY 137 67 1 Y 1 A ASN 196 ? A ASN 138 68 1 Y 1 A SER 197 ? A SER 139 69 1 Y 1 A GLY 198 ? A GLY 140 70 1 Y 1 A ALA 199 ? A ALA 141 71 1 Y 1 A GLU 200 ? A GLU 142 72 1 Y 1 A ASP 201 ? A ASP 143 73 1 Y 1 A GLY 202 ? A GLY 144 74 1 Y 1 A GLY 203 ? A GLY 145 75 1 Y 1 A ALA 204 ? A ALA 146 76 1 Y 1 A GLU 205 ? A GLU 147 77 1 Y 1 A ASP 485 ? A ASP 427 78 1 Y 1 A LEU 486 ? A LEU 428 79 1 Y 1 A GLU 487 ? A GLU 429 80 1 Y 1 A ASP 488 ? A ASP 430 81 1 Y 1 A GLY 489 ? A GLY 431 82 1 Y 1 A LYS 490 ? A LYS 432 83 1 Y 1 A ASP 491 ? A ASP 433 84 1 Y 1 A ARG 492 ? A ARG 434 85 1 Y 1 A ASP 493 ? A ASP 435 86 1 Y 1 A LEU 494 ? A LEU 436 87 1 Y 1 A HIS 495 ? A HIS 437 88 1 Y 1 A VAL 496 ? A VAL 438 89 1 Y 1 A SER 497 ? A SER 439 90 1 Y 1 A ARG 506 ? A ARG 448 91 1 Y 1 A GLY 507 ? A GLY 449 92 1 Y 1 A ALA 508 ? A ALA 450 93 1 Y 1 A THR 509 ? A THR 451 94 1 Y 1 A GLY 510 ? A GLY 452 95 1 Y 1 A ASP 511 ? A ASP 453 96 1 Y 1 A LEU 539 ? A LEU 481 97 1 Y 1 A ASP 540 ? A ASP 482 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #