HEADER DE NOVO PROTEIN 23-AUG-06 2DX4 TITLE NMR STRUCTURE OF DP5_CONFORMATION2: MONOMERIC BETA-HAIRPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DP5_CONFORMATION2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED AND DOES NOT SOURCE 4 APPEAR TO OCCUR IN NATURE. THIS SEQUENCE WAS DESIGNED BASED ON A SOURCE 5 STRATEGY. KEYWDS BETA-HAIRPIN, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.TAMURA,M.ARAKI REVDAT 4 09-MAR-22 2DX4 1 REMARK REVDAT 3 24-FEB-09 2DX4 1 VERSN REVDAT 2 27-FEB-07 2DX4 1 JRNL REVDAT 1 02-JAN-07 2DX4 0 JRNL AUTH M.ARAKI,A.TAMURA JRNL TITL TRANSFORMATION OF AN ALPHA-HELIX PEPTIDE INTO A BETA-HAIRPIN JRNL TITL 2 INDUCED BY ADDITION OF A FRAGMENT RESULTS IN CREATION OF A JRNL TITL 3 COEXISTING STATE. JRNL REF PROTEINS V. 66 860 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 17177204 JRNL DOI 10.1002/PROT.21263 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DX4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000025951. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 6.5MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM TP; 10MM ACETIC ACID-3MM REMARK 210 NAOH BUFFER, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XWINNMR 1.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURES WERE DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 8 H TYR A 12 1.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 66.01 80.00 REMARK 500 1 TRP A 4 -86.97 -70.43 REMARK 500 1 ALA A 6 106.38 -39.22 REMARK 500 1 HIS A 7 -60.50 -152.80 REMARK 500 1 ALA A 8 -100.29 -176.84 REMARK 500 1 LYS A 9 52.57 33.67 REMARK 500 1 ALA A 10 58.05 72.28 REMARK 500 1 VAL A 14 -154.61 -128.22 REMARK 500 1 HIS A 15 56.45 -164.15 REMARK 500 1 TRP A 16 -160.40 -72.95 REMARK 500 1 THR A 17 131.63 171.01 REMARK 500 2 TYR A 3 77.33 -107.95 REMARK 500 2 TRP A 4 -77.04 -41.04 REMARK 500 2 ALA A 6 98.07 -38.64 REMARK 500 2 ALA A 8 -92.23 -42.57 REMARK 500 2 LYS A 9 49.19 35.79 REMARK 500 2 ALA A 10 53.85 70.15 REMARK 500 2 ILE A 13 100.31 -40.48 REMARK 500 2 VAL A 14 -168.27 -117.59 REMARK 500 2 HIS A 15 58.13 -161.82 REMARK 500 2 TRP A 16 -159.56 -68.91 REMARK 500 3 ASN A 2 141.85 165.83 REMARK 500 3 TYR A 3 24.91 -156.75 REMARK 500 3 LEU A 5 -94.79 66.70 REMARK 500 3 ALA A 6 48.54 85.24 REMARK 500 3 ALA A 8 -96.73 -49.53 REMARK 500 3 HIS A 15 56.72 -155.46 REMARK 500 3 TRP A 16 -160.47 -77.93 REMARK 500 4 LEU A 5 -109.54 64.19 REMARK 500 4 ALA A 6 91.96 83.58 REMARK 500 4 HIS A 7 -63.46 -155.36 REMARK 500 4 ALA A 8 -99.88 -178.27 REMARK 500 4 LYS A 9 53.50 34.14 REMARK 500 4 ALA A 10 56.84 73.15 REMARK 500 4 VAL A 14 -158.81 -132.08 REMARK 500 4 HIS A 15 52.75 -162.75 REMARK 500 4 TRP A 16 -159.19 -77.77 REMARK 500 5 ASN A 2 73.78 -111.73 REMARK 500 5 TYR A 3 37.70 -88.73 REMARK 500 5 TRP A 4 -78.96 -48.13 REMARK 500 5 ALA A 6 106.53 -39.28 REMARK 500 5 HIS A 7 -62.01 -155.86 REMARK 500 5 ALA A 8 -105.11 -178.05 REMARK 500 5 LYS A 9 50.41 35.21 REMARK 500 5 ALA A 10 56.79 83.27 REMARK 500 5 VAL A 14 -160.23 -102.10 REMARK 500 5 HIS A 15 56.98 -164.94 REMARK 500 5 TRP A 16 -160.31 -73.64 REMARK 500 6 ASN A 2 92.10 160.39 REMARK 500 6 TYR A 3 49.77 -86.75 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DX2 RELATED DB: PDB REMARK 900 TARGET PEPTIDE REMARK 900 RELATED ID: 2DX3 RELATED DB: PDB REMARK 900 DP5_CONFORMATION1 DBREF 2DX4 A 1 18 PDB 2DX4 2DX4 1 18 SEQRES 1 A 18 ILE ASN TYR TRP LEU ALA HIS ALA LYS ALA GLY TYR ILE SEQRES 2 A 18 VAL HIS TRP THR ALA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1