data_2DXE # _entry.id 2DXE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2DXE RCSB RCSB025961 WWPDB D_1000025961 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2DXD 'the same protein in complex with ATP analog' unspecified PDB 2DXF 'the same protein in complex with GTP analog' unspecified TargetDB pho001000698.7 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DXE _pdbx_database_status.recvd_initial_deposition_date 2006-08-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kato-Murayama, M.' 1 'Murayama, K.' 2 'Terada, T.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of nucleoside diphosphate kinase in complex with GDP' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kato-Murayama, M.' 1 primary 'Murayama, K.' 2 primary 'Terada, T.' 3 primary 'Shirouzu, M.' 4 primary 'Yokoyama, S.' 5 # _cell.entry_id 2DXE _cell.length_a 69.802 _cell.length_b 69.802 _cell.length_c 107.093 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DXE _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 18342.336 2 2.7.4.6 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 5 water nat water 18.015 380 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDK, NDP kinase, Nucleoside-2-P kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MFQMSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMV LEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYKKGI ; _entity_poly.pdbx_seq_one_letter_code_can ;MFQMSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMV LEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYKKGI ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier pho001000698.7 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 GLN n 1 4 MET n 1 5 SER n 1 6 GLU n 1 7 THR n 1 8 GLU n 1 9 ARG n 1 10 THR n 1 11 LEU n 1 12 VAL n 1 13 ILE n 1 14 ILE n 1 15 LYS n 1 16 PRO n 1 17 ASP n 1 18 ALA n 1 19 VAL n 1 20 VAL n 1 21 ARG n 1 22 GLY n 1 23 LEU n 1 24 ILE n 1 25 GLY n 1 26 GLU n 1 27 ILE n 1 28 ILE n 1 29 SER n 1 30 ARG n 1 31 PHE n 1 32 GLU n 1 33 LYS n 1 34 LYS n 1 35 GLY n 1 36 LEU n 1 37 LYS n 1 38 ILE n 1 39 VAL n 1 40 GLY n 1 41 MET n 1 42 LYS n 1 43 MET n 1 44 ILE n 1 45 TRP n 1 46 ILE n 1 47 ASP n 1 48 ARG n 1 49 GLU n 1 50 LEU n 1 51 ALA n 1 52 GLU n 1 53 LYS n 1 54 HIS n 1 55 TYR n 1 56 GLU n 1 57 GLU n 1 58 HIS n 1 59 ARG n 1 60 GLU n 1 61 LYS n 1 62 PRO n 1 63 PHE n 1 64 PHE n 1 65 LYS n 1 66 ALA n 1 67 LEU n 1 68 ILE n 1 69 ASP n 1 70 TYR n 1 71 ILE n 1 72 THR n 1 73 LYS n 1 74 THR n 1 75 PRO n 1 76 VAL n 1 77 VAL n 1 78 VAL n 1 79 MET n 1 80 VAL n 1 81 LEU n 1 82 GLU n 1 83 GLY n 1 84 ARG n 1 85 TYR n 1 86 ALA n 1 87 VAL n 1 88 GLU n 1 89 VAL n 1 90 VAL n 1 91 ARG n 1 92 LYS n 1 93 MET n 1 94 ALA n 1 95 GLY n 1 96 ALA n 1 97 THR n 1 98 ASP n 1 99 PRO n 1 100 LYS n 1 101 ASP n 1 102 ALA n 1 103 ALA n 1 104 PRO n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 GLY n 1 110 ASP n 1 111 PHE n 1 112 GLY n 1 113 LEU n 1 114 GLU n 1 115 VAL n 1 116 SER n 1 117 ASP n 1 118 ALA n 1 119 ILE n 1 120 CYS n 1 121 ASN n 1 122 VAL n 1 123 ILE n 1 124 HIS n 1 125 ALA n 1 126 SER n 1 127 ASP n 1 128 SER n 1 129 LYS n 1 130 GLU n 1 131 SER n 1 132 ALA n 1 133 GLU n 1 134 ARG n 1 135 GLU n 1 136 ILE n 1 137 SER n 1 138 LEU n 1 139 PHE n 1 140 PHE n 1 141 LYS n 1 142 PRO n 1 143 GLU n 1 144 GLU n 1 145 LEU n 1 146 PHE n 1 147 GLU n 1 148 TYR n 1 149 PRO n 1 150 ARG n 1 151 ALA n 1 152 ALA n 1 153 ASP n 1 154 TRP n 1 155 PHE n 1 156 TYR n 1 157 LYS n 1 158 LYS n 1 159 GLY n 1 160 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ndk _entity_src_gen.gene_src_species 'Pyrococcus horikoshii' _entity_src_gen.gene_src_strain OT3 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 70601 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_PYRHO _struct_ref.pdbx_db_accession O58429 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEG RYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAADWFYKKGI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DXE A 4 ? 160 ? O58429 1 ? 157 ? 4 160 2 1 2DXE B 4 ? 160 ? O58429 1 ? 157 ? 4 160 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DXE MET A 1 ? UNP O58429 ? ? 'SEE REMARK 999' 1 1 1 2DXE PHE A 2 ? UNP O58429 ? ? 'SEE REMARK 999' 2 2 1 2DXE GLN A 3 ? UNP O58429 ? ? 'SEE REMARK 999' 3 3 2 2DXE MET B 1 ? UNP O58429 ? ? 'SEE REMARK 999' 1 4 2 2DXE PHE B 2 ? UNP O58429 ? ? 'SEE REMARK 999' 2 5 2 2DXE GLN B 3 ? UNP O58429 ? ? 'SEE REMARK 999' 3 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DXE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 40.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'Na Citrate, Bicine, 1mM GDP, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2006-03-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'conforcal mirror' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2DXE _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.10 _reflns.d_resolution_high 1.70 _reflns.number_obs 32493 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.044 _reflns.pdbx_netI_over_sigmaI 39.0 _reflns.B_iso_Wilson_estimate 17.5 _reflns.pdbx_redundancy 7.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.09 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2DXE _refine.ls_number_reflns_obs 32449 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1402830.53 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.08 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.8 _refine.ls_R_factor_obs 0.168 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.168 _refine.ls_R_factor_R_free 0.19 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1609 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 17.3 _refine.aniso_B[1][1] -0.46 _refine.aniso_B[2][2] -0.46 _refine.aniso_B[3][3] 0.92 _refine.aniso_B[1][2] 0.37 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.390771 _refine.solvent_model_param_bsol 48.1403 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2CWK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DXE _refine_analyze.Luzzati_coordinate_error_obs 0.16 _refine_analyze.Luzzati_sigma_a_obs 0.05 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.19 _refine_analyze.Luzzati_sigma_a_free 0.11 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2491 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 380 _refine_hist.number_atoms_total 2904 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 40.08 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.81 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.04 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.57 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.91 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.83 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 5095 _refine_ls_shell.R_factor_R_work 0.213 _refine_ls_shell.percent_reflns_obs 99.8 _refine_ls_shell.R_factor_R_free 0.255 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 273 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 GDP.param GDP.top 'X-RAY DIFFRACTION' 3 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2DXE _struct.title 'Crystal structure of nucleoside diphosphate kinase in complex with GDP' _struct.pdbx_descriptor 'Nucleoside diphosphate kinase (E.C.2.7.4.6)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DXE _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;nucleoside binding, kinase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 3 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? ARG A 21 ? LYS A 15 ARG A 21 1 ? 7 HELX_P HELX_P2 2 LEU A 23 ? GLY A 35 ? LEU A 23 GLY A 35 1 ? 13 HELX_P HELX_P3 3 ASP A 47 ? TYR A 55 ? ASP A 47 TYR A 55 1 ? 9 HELX_P HELX_P4 4 GLU A 56 ? ARG A 59 ? GLU A 56 ARG A 59 5 ? 4 HELX_P HELX_P5 5 PHE A 63 ? THR A 72 ? PHE A 63 THR A 72 1 ? 10 HELX_P HELX_P6 6 TYR A 85 ? GLY A 95 ? TYR A 85 GLY A 95 1 ? 11 HELX_P HELX_P7 7 ASP A 98 ? ALA A 102 ? ASP A 98 ALA A 102 5 ? 5 HELX_P HELX_P8 8 THR A 106 ? GLY A 112 ? THR A 106 GLY A 112 1 ? 7 HELX_P HELX_P9 9 SER A 128 ? PHE A 140 ? SER A 128 PHE A 140 1 ? 13 HELX_P HELX_P10 10 LYS A 141 ? LEU A 145 ? LYS A 141 LEU A 145 5 ? 5 HELX_P HELX_P11 11 ALA A 152 ? LYS A 157 ? ALA A 152 LYS A 157 1 ? 6 HELX_P HELX_P12 12 LYS B 15 ? ARG B 21 ? LYS B 15 ARG B 21 1 ? 7 HELX_P HELX_P13 13 LEU B 23 ? GLY B 35 ? LEU B 23 GLY B 35 1 ? 13 HELX_P HELX_P14 14 ASP B 47 ? TYR B 55 ? ASP B 47 TYR B 55 1 ? 9 HELX_P HELX_P15 15 GLU B 56 ? ARG B 59 ? GLU B 56 ARG B 59 5 ? 4 HELX_P HELX_P16 16 PHE B 63 ? THR B 72 ? PHE B 63 THR B 72 1 ? 10 HELX_P HELX_P17 17 TYR B 85 ? GLY B 95 ? TYR B 85 GLY B 95 1 ? 11 HELX_P HELX_P18 18 THR B 106 ? GLY B 112 ? THR B 106 GLY B 112 1 ? 7 HELX_P HELX_P19 19 SER B 128 ? PHE B 140 ? SER B 128 PHE B 140 1 ? 13 HELX_P HELX_P20 20 LYS B 141 ? LEU B 145 ? LYS B 141 LEU B 145 5 ? 5 HELX_P HELX_P21 21 ALA B 152 ? LYS B 157 ? ALA B 152 LYS B 157 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 601 A HOH 760 1_555 ? ? ? ? ? ? ? 2.426 ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 601 A HOH 765 1_555 ? ? ? ? ? ? ? 2.481 ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 601 A HOH 769 1_555 ? ? ? ? ? ? ? 2.300 ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F GDP . O1B ? ? A MG 601 A GDP 501 1_555 ? ? ? ? ? ? ? 2.271 ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F GDP . O1A ? ? A MG 601 A GDP 501 1_555 ? ? ? ? ? ? ? 2.173 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 37 ? ILE A 44 ? LYS A 37 ILE A 44 A 2 VAL A 76 ? ARG A 84 ? VAL A 76 ARG A 84 A 3 THR A 7 ? ILE A 14 ? THR A 7 ILE A 14 A 4 ILE A 123 ? ALA A 125 ? ILE A 123 ALA A 125 B 1 LYS B 37 ? ILE B 44 ? LYS B 37 ILE B 44 B 2 VAL B 76 ? ARG B 84 ? VAL B 76 ARG B 84 B 3 THR B 7 ? ILE B 14 ? THR B 7 ILE B 14 B 4 ILE B 123 ? ALA B 125 ? ILE B 123 ALA B 125 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 37 ? N LYS A 37 O GLU A 82 ? O GLU A 82 A 2 3 O VAL A 77 ? O VAL A 77 N ILE A 14 ? N ILE A 14 A 3 4 N ILE A 13 ? N ILE A 13 O HIS A 124 ? O HIS A 124 B 1 2 N LYS B 37 ? N LYS B 37 O GLU B 82 ? O GLU B 82 B 2 3 O VAL B 77 ? O VAL B 77 N ILE B 14 ? N ILE B 14 B 3 4 N ILE B 13 ? N ILE B 13 O HIS B 124 ? O HIS B 124 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG A 601' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL B 701' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL A 702' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CL A 703' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CL B 704' AC6 Software ? ? ? ? 18 'BINDING SITE FOR RESIDUE GDP A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GDP F . ? GDP A 501 . ? 1_555 ? 2 AC1 4 HOH I . ? HOH A 760 . ? 1_555 ? 3 AC1 4 HOH I . ? HOH A 765 . ? 1_555 ? 4 AC1 4 HOH I . ? HOH A 769 . ? 1_555 ? 5 AC2 3 GLY B 95 ? GLY B 95 . ? 1_555 ? 6 AC2 3 ALA B 96 ? ALA B 96 . ? 1_555 ? 7 AC2 3 ALA B 103 ? ALA B 103 . ? 1_555 ? 8 AC3 4 ARG A 150 ? ARG A 150 . ? 1_555 ? 9 AC3 4 ALA A 151 ? ALA A 151 . ? 1_555 ? 10 AC3 4 ALA A 152 ? ALA A 152 . ? 1_555 ? 11 AC3 4 HOH I . ? HOH A 829 . ? 1_555 ? 12 AC4 5 GLY A 95 ? GLY A 95 . ? 1_555 ? 13 AC4 5 ALA A 96 ? ALA A 96 . ? 1_555 ? 14 AC4 5 ALA A 103 ? ALA A 103 . ? 1_555 ? 15 AC4 5 HOH I . ? HOH A 822 . ? 1_555 ? 16 AC4 5 HOH I . ? HOH A 856 . ? 1_555 ? 17 AC5 4 ARG B 150 ? ARG B 150 . ? 3_665 ? 18 AC5 4 ALA B 151 ? ALA B 151 . ? 3_665 ? 19 AC5 4 ALA B 152 ? ALA B 152 . ? 3_665 ? 20 AC5 4 HOH J . ? HOH B 755 . ? 1_555 ? 21 AC6 18 LYS A 15 ? LYS A 15 . ? 1_555 ? 22 AC6 18 HIS A 58 ? HIS A 58 . ? 1_555 ? 23 AC6 18 PHE A 63 ? PHE A 63 . ? 1_555 ? 24 AC6 18 LEU A 67 ? LEU A 67 . ? 1_555 ? 25 AC6 18 ARG A 91 ? ARG A 91 . ? 1_555 ? 26 AC6 18 THR A 97 ? THR A 97 . ? 1_555 ? 27 AC6 18 ARG A 108 ? ARG A 108 . ? 1_555 ? 28 AC6 18 ASP A 117 ? ASP A 117 . ? 1_555 ? 29 AC6 18 ALA A 118 ? ALA A 118 . ? 1_555 ? 30 AC6 18 ILE A 119 ? ILE A 119 . ? 1_555 ? 31 AC6 18 ASN A 121 ? ASN A 121 . ? 1_555 ? 32 AC6 18 MG C . ? MG A 601 . ? 1_555 ? 33 AC6 18 HOH I . ? HOH A 727 . ? 1_555 ? 34 AC6 18 HOH I . ? HOH A 729 . ? 1_555 ? 35 AC6 18 HOH I . ? HOH A 774 . ? 1_555 ? 36 AC6 18 HOH I . ? HOH A 809 . ? 1_555 ? 37 AC6 18 HOH I . ? HOH A 853 . ? 1_555 ? 38 AC6 18 HOH I . ? HOH A 868 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DXE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DXE _atom_sites.fract_transf_matrix[1][1] 0.014326 _atom_sites.fract_transf_matrix[1][2] 0.008271 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016543 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009338 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 PHE 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 MET 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 MET 41 41 41 MET MET A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 MET 43 43 43 MET MET A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 MET 79 79 79 MET MET A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 TYR 85 85 85 TYR TYR A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 CYS 120 120 120 CYS CYS A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 PHE 140 140 140 PHE PHE A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 TRP 154 154 154 TRP TRP A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 TYR 156 156 156 TYR TYR A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 ILE 160 160 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 PHE 2 2 ? ? ? B . n B 1 3 GLN 3 3 ? ? ? B . n B 1 4 MET 4 4 ? ? ? B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 THR 10 10 10 THR THR B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 PRO 16 16 16 PRO PRO B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 ALA 18 18 18 ALA ALA B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ARG 21 21 21 ARG ARG B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 ARG 30 30 30 ARG ARG B . n B 1 31 PHE 31 31 31 PHE PHE B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 LYS 33 33 33 LYS LYS B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 LYS 37 37 37 LYS LYS B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 MET 41 41 41 MET MET B . n B 1 42 LYS 42 42 42 LYS LYS B . n B 1 43 MET 43 43 43 MET MET B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 TRP 45 45 45 TRP TRP B . n B 1 46 ILE 46 46 46 ILE ILE B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 ARG 48 48 48 ARG ARG B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 ALA 51 51 51 ALA ALA B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 LYS 53 53 53 LYS LYS B . n B 1 54 HIS 54 54 54 HIS HIS B . n B 1 55 TYR 55 55 55 TYR TYR B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 GLU 57 57 57 GLU GLU B . n B 1 58 HIS 58 58 58 HIS HIS B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 LYS 61 61 61 LYS LYS B . n B 1 62 PRO 62 62 62 PRO PRO B . n B 1 63 PHE 63 63 63 PHE PHE B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 LEU 67 67 67 LEU LEU B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 ASP 69 69 69 ASP ASP B . n B 1 70 TYR 70 70 70 TYR TYR B . n B 1 71 ILE 71 71 71 ILE ILE B . n B 1 72 THR 72 72 72 THR THR B . n B 1 73 LYS 73 73 73 LYS LYS B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 PRO 75 75 75 PRO PRO B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 MET 79 79 79 MET MET B . n B 1 80 VAL 80 80 80 VAL VAL B . n B 1 81 LEU 81 81 81 LEU LEU B . n B 1 82 GLU 82 82 82 GLU GLU B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 ARG 84 84 84 ARG ARG B . n B 1 85 TYR 85 85 85 TYR TYR B . n B 1 86 ALA 86 86 86 ALA ALA B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 GLU 88 88 88 GLU GLU B . n B 1 89 VAL 89 89 89 VAL VAL B . n B 1 90 VAL 90 90 90 VAL VAL B . n B 1 91 ARG 91 91 91 ARG ARG B . n B 1 92 LYS 92 92 92 LYS LYS B . n B 1 93 MET 93 93 93 MET MET B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 THR 97 97 97 THR THR B . n B 1 98 ASP 98 98 98 ASP ASP B . n B 1 99 PRO 99 99 99 PRO PRO B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 ASP 101 101 101 ASP ASP B . n B 1 102 ALA 102 102 102 ALA ALA B . n B 1 103 ALA 103 103 103 ALA ALA B . n B 1 104 PRO 104 104 104 PRO PRO B . n B 1 105 GLY 105 105 105 GLY GLY B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 ARG 108 108 108 ARG ARG B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 ASP 110 110 110 ASP ASP B . n B 1 111 PHE 111 111 111 PHE PHE B . n B 1 112 GLY 112 112 112 GLY GLY B . n B 1 113 LEU 113 113 113 LEU LEU B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 SER 116 116 116 SER SER B . n B 1 117 ASP 117 117 117 ASP ASP B . n B 1 118 ALA 118 118 118 ALA ALA B . n B 1 119 ILE 119 119 119 ILE ILE B . n B 1 120 CYS 120 120 120 CYS CYS B . n B 1 121 ASN 121 121 121 ASN ASN B . n B 1 122 VAL 122 122 122 VAL VAL B . n B 1 123 ILE 123 123 123 ILE ILE B . n B 1 124 HIS 124 124 124 HIS HIS B . n B 1 125 ALA 125 125 125 ALA ALA B . n B 1 126 SER 126 126 126 SER SER B . n B 1 127 ASP 127 127 127 ASP ASP B . n B 1 128 SER 128 128 128 SER SER B . n B 1 129 LYS 129 129 129 LYS LYS B . n B 1 130 GLU 130 130 130 GLU GLU B . n B 1 131 SER 131 131 131 SER SER B . n B 1 132 ALA 132 132 132 ALA ALA B . n B 1 133 GLU 133 133 133 GLU GLU B . n B 1 134 ARG 134 134 134 ARG ARG B . n B 1 135 GLU 135 135 135 GLU GLU B . n B 1 136 ILE 136 136 136 ILE ILE B . n B 1 137 SER 137 137 137 SER SER B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 PHE 139 139 139 PHE PHE B . n B 1 140 PHE 140 140 140 PHE PHE B . n B 1 141 LYS 141 141 141 LYS LYS B . n B 1 142 PRO 142 142 142 PRO PRO B . n B 1 143 GLU 143 143 143 GLU GLU B . n B 1 144 GLU 144 144 144 GLU GLU B . n B 1 145 LEU 145 145 145 LEU LEU B . n B 1 146 PHE 146 146 146 PHE PHE B . n B 1 147 GLU 147 147 147 GLU GLU B . n B 1 148 TYR 148 148 148 TYR TYR B . n B 1 149 PRO 149 149 149 PRO PRO B . n B 1 150 ARG 150 150 150 ARG ARG B . n B 1 151 ALA 151 151 151 ALA ALA B . n B 1 152 ALA 152 152 152 ALA ALA B . n B 1 153 ASP 153 153 153 ASP ASP B . n B 1 154 TRP 154 154 154 TRP TRP B . n B 1 155 PHE 155 155 155 PHE PHE B . n B 1 156 TYR 156 156 156 TYR TYR B . n B 1 157 LYS 157 157 157 LYS LYS B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 GLY 159 159 159 GLY GLY B . n B 1 160 ILE 160 160 160 ILE ILE B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 601 601 MG MG A . D 3 CL 1 702 702 CL CL A . E 3 CL 1 703 703 CL CL A . F 4 GDP 1 501 501 GDP GDP A . G 3 CL 1 701 701 CL CL B . H 3 CL 1 704 704 CL CL B . I 5 HOH 1 704 1 HOH TIP A . I 5 HOH 2 705 2 HOH TIP A . I 5 HOH 3 706 3 HOH TIP A . I 5 HOH 4 707 7 HOH TIP A . I 5 HOH 5 708 8 HOH TIP A . I 5 HOH 6 709 9 HOH TIP A . I 5 HOH 7 710 10 HOH TIP A . I 5 HOH 8 711 14 HOH TIP A . I 5 HOH 9 712 15 HOH TIP A . I 5 HOH 10 713 16 HOH TIP A . I 5 HOH 11 714 17 HOH TIP A . I 5 HOH 12 715 20 HOH TIP A . I 5 HOH 13 716 21 HOH TIP A . I 5 HOH 14 717 24 HOH TIP A . I 5 HOH 15 718 25 HOH TIP A . I 5 HOH 16 719 29 HOH TIP A . I 5 HOH 17 720 31 HOH TIP A . I 5 HOH 18 721 32 HOH TIP A . I 5 HOH 19 722 33 HOH TIP A . I 5 HOH 20 723 35 HOH TIP A . I 5 HOH 21 724 36 HOH TIP A . I 5 HOH 22 725 39 HOH TIP A . I 5 HOH 23 726 40 HOH TIP A . I 5 HOH 24 727 43 HOH TIP A . I 5 HOH 25 728 44 HOH TIP A . I 5 HOH 26 729 45 HOH TIP A . I 5 HOH 27 730 50 HOH TIP A . I 5 HOH 28 731 52 HOH TIP A . I 5 HOH 29 732 54 HOH TIP A . I 5 HOH 30 733 55 HOH TIP A . I 5 HOH 31 734 57 HOH TIP A . I 5 HOH 32 735 60 HOH TIP A . I 5 HOH 33 736 61 HOH TIP A . I 5 HOH 34 737 62 HOH TIP A . I 5 HOH 35 738 63 HOH TIP A . I 5 HOH 36 739 65 HOH TIP A . I 5 HOH 37 740 66 HOH TIP A . I 5 HOH 38 741 67 HOH TIP A . I 5 HOH 39 742 70 HOH TIP A . I 5 HOH 40 743 74 HOH TIP A . I 5 HOH 41 744 75 HOH TIP A . I 5 HOH 42 745 76 HOH TIP A . I 5 HOH 43 746 78 HOH TIP A . I 5 HOH 44 747 80 HOH TIP A . I 5 HOH 45 748 82 HOH TIP A . I 5 HOH 46 749 83 HOH TIP A . I 5 HOH 47 750 84 HOH TIP A . I 5 HOH 48 751 86 HOH TIP A . I 5 HOH 49 752 87 HOH TIP A . I 5 HOH 50 753 91 HOH TIP A . I 5 HOH 51 754 92 HOH TIP A . I 5 HOH 52 755 97 HOH TIP A . I 5 HOH 53 756 98 HOH TIP A . I 5 HOH 54 757 99 HOH TIP A . I 5 HOH 55 758 100 HOH TIP A . I 5 HOH 56 759 103 HOH TIP A . I 5 HOH 57 760 104 HOH TIP A . I 5 HOH 58 761 105 HOH TIP A . I 5 HOH 59 762 106 HOH TIP A . I 5 HOH 60 763 107 HOH TIP A . I 5 HOH 61 764 108 HOH TIP A . I 5 HOH 62 765 109 HOH TIP A . I 5 HOH 63 766 111 HOH TIP A . I 5 HOH 64 767 115 HOH TIP A . I 5 HOH 65 768 117 HOH TIP A . I 5 HOH 66 769 125 HOH TIP A . I 5 HOH 67 770 128 HOH TIP A . I 5 HOH 68 771 131 HOH TIP A . I 5 HOH 69 772 132 HOH TIP A . I 5 HOH 70 773 134 HOH TIP A . I 5 HOH 71 774 137 HOH TIP A . I 5 HOH 72 775 138 HOH TIP A . I 5 HOH 73 776 139 HOH TIP A . I 5 HOH 74 777 140 HOH TIP A . I 5 HOH 75 778 141 HOH TIP A . I 5 HOH 76 779 143 HOH TIP A . I 5 HOH 77 780 146 HOH TIP A . I 5 HOH 78 781 147 HOH TIP A . I 5 HOH 79 782 151 HOH TIP A . I 5 HOH 80 783 152 HOH TIP A . I 5 HOH 81 784 155 HOH TIP A . I 5 HOH 82 785 156 HOH TIP A . I 5 HOH 83 786 157 HOH TIP A . I 5 HOH 84 787 159 HOH TIP A . I 5 HOH 85 788 164 HOH TIP A . I 5 HOH 86 789 165 HOH TIP A . I 5 HOH 87 790 166 HOH TIP A . I 5 HOH 88 791 168 HOH TIP A . I 5 HOH 89 792 170 HOH TIP A . I 5 HOH 90 793 174 HOH TIP A . I 5 HOH 91 794 175 HOH TIP A . I 5 HOH 92 795 179 HOH TIP A . I 5 HOH 93 796 180 HOH TIP A . I 5 HOH 94 797 181 HOH TIP A . I 5 HOH 95 798 183 HOH TIP A . I 5 HOH 96 799 185 HOH TIP A . I 5 HOH 97 800 186 HOH TIP A . I 5 HOH 98 801 187 HOH TIP A . I 5 HOH 99 802 188 HOH TIP A . I 5 HOH 100 803 189 HOH TIP A . I 5 HOH 101 804 190 HOH TIP A . I 5 HOH 102 805 192 HOH TIP A . I 5 HOH 103 806 195 HOH TIP A . I 5 HOH 104 807 197 HOH TIP A . I 5 HOH 105 808 198 HOH TIP A . I 5 HOH 106 809 199 HOH TIP A . I 5 HOH 107 810 200 HOH TIP A . I 5 HOH 108 811 201 HOH TIP A . I 5 HOH 109 812 202 HOH TIP A . I 5 HOH 110 813 204 HOH TIP A . I 5 HOH 111 814 205 HOH TIP A . I 5 HOH 112 815 208 HOH TIP A . I 5 HOH 113 816 211 HOH TIP A . I 5 HOH 114 817 214 HOH TIP A . I 5 HOH 115 818 215 HOH TIP A . I 5 HOH 116 819 217 HOH TIP A . I 5 HOH 117 820 222 HOH TIP A . I 5 HOH 118 821 223 HOH TIP A . I 5 HOH 119 822 224 HOH TIP A . I 5 HOH 120 823 226 HOH TIP A . I 5 HOH 121 824 227 HOH TIP A . I 5 HOH 122 825 228 HOH TIP A . I 5 HOH 123 826 229 HOH TIP A . I 5 HOH 124 827 231 HOH TIP A . I 5 HOH 125 828 232 HOH TIP A . I 5 HOH 126 829 234 HOH TIP A . I 5 HOH 127 830 236 HOH TIP A . I 5 HOH 128 831 239 HOH TIP A . I 5 HOH 129 832 240 HOH TIP A . I 5 HOH 130 833 241 HOH TIP A . I 5 HOH 131 834 246 HOH TIP A . I 5 HOH 132 835 249 HOH TIP A . I 5 HOH 133 836 252 HOH TIP A . I 5 HOH 134 837 253 HOH TIP A . I 5 HOH 135 838 254 HOH TIP A . I 5 HOH 136 839 259 HOH TIP A . I 5 HOH 137 840 261 HOH TIP A . I 5 HOH 138 841 262 HOH TIP A . I 5 HOH 139 842 268 HOH TIP A . I 5 HOH 140 843 270 HOH TIP A . I 5 HOH 141 844 271 HOH TIP A . I 5 HOH 142 845 275 HOH TIP A . I 5 HOH 143 846 278 HOH TIP A . I 5 HOH 144 847 279 HOH TIP A . I 5 HOH 145 848 282 HOH TIP A . I 5 HOH 146 849 284 HOH TIP A . I 5 HOH 147 850 285 HOH TIP A . I 5 HOH 148 851 286 HOH TIP A . I 5 HOH 149 852 291 HOH TIP A . I 5 HOH 150 853 294 HOH TIP A . I 5 HOH 151 854 297 HOH TIP A . I 5 HOH 152 855 299 HOH TIP A . I 5 HOH 153 856 300 HOH TIP A . I 5 HOH 154 857 301 HOH TIP A . I 5 HOH 155 858 302 HOH TIP A . I 5 HOH 156 859 303 HOH TIP A . I 5 HOH 157 860 304 HOH TIP A . I 5 HOH 158 861 307 HOH TIP A . I 5 HOH 159 862 311 HOH TIP A . I 5 HOH 160 863 316 HOH TIP A . I 5 HOH 161 864 318 HOH TIP A . I 5 HOH 162 865 319 HOH TIP A . I 5 HOH 163 866 321 HOH TIP A . I 5 HOH 164 867 322 HOH TIP A . I 5 HOH 165 868 324 HOH TIP A . I 5 HOH 166 869 325 HOH TIP A . I 5 HOH 167 870 326 HOH TIP A . I 5 HOH 168 871 327 HOH TIP A . I 5 HOH 169 872 328 HOH TIP A . I 5 HOH 170 873 330 HOH TIP A . I 5 HOH 171 874 332 HOH TIP A . I 5 HOH 172 875 334 HOH TIP A . I 5 HOH 173 876 335 HOH TIP A . I 5 HOH 174 877 339 HOH TIP A . I 5 HOH 175 878 340 HOH TIP A . I 5 HOH 176 879 341 HOH TIP A . I 5 HOH 177 880 342 HOH TIP A . I 5 HOH 178 881 344 HOH TIP A . I 5 HOH 179 882 345 HOH TIP A . I 5 HOH 180 883 346 HOH TIP A . I 5 HOH 181 884 350 HOH TIP A . I 5 HOH 182 885 351 HOH TIP A . I 5 HOH 183 886 352 HOH TIP A . I 5 HOH 184 887 353 HOH TIP A . I 5 HOH 185 888 356 HOH TIP A . I 5 HOH 186 889 359 HOH TIP A . I 5 HOH 187 890 361 HOH TIP A . I 5 HOH 188 891 369 HOH TIP A . I 5 HOH 189 892 370 HOH TIP A . I 5 HOH 190 893 371 HOH TIP A . I 5 HOH 191 894 378 HOH TIP A . I 5 HOH 192 895 380 HOH TIP A . J 5 HOH 1 705 4 HOH TIP B . J 5 HOH 2 706 5 HOH TIP B . J 5 HOH 3 707 6 HOH TIP B . J 5 HOH 4 708 11 HOH TIP B . J 5 HOH 5 709 12 HOH TIP B . J 5 HOH 6 710 13 HOH TIP B . J 5 HOH 7 711 18 HOH TIP B . J 5 HOH 8 712 19 HOH TIP B . J 5 HOH 9 713 22 HOH TIP B . J 5 HOH 10 714 23 HOH TIP B . J 5 HOH 11 715 26 HOH TIP B . J 5 HOH 12 716 27 HOH TIP B . J 5 HOH 13 717 28 HOH TIP B . J 5 HOH 14 718 30 HOH TIP B . J 5 HOH 15 719 34 HOH TIP B . J 5 HOH 16 720 37 HOH TIP B . J 5 HOH 17 721 38 HOH TIP B . J 5 HOH 18 722 41 HOH TIP B . J 5 HOH 19 723 42 HOH TIP B . J 5 HOH 20 724 46 HOH TIP B . J 5 HOH 21 725 47 HOH TIP B . J 5 HOH 22 726 48 HOH TIP B . J 5 HOH 23 727 49 HOH TIP B . J 5 HOH 24 728 51 HOH TIP B . J 5 HOH 25 729 53 HOH TIP B . J 5 HOH 26 730 56 HOH TIP B . J 5 HOH 27 731 58 HOH TIP B . J 5 HOH 28 732 59 HOH TIP B . J 5 HOH 29 733 64 HOH TIP B . J 5 HOH 30 734 68 HOH TIP B . J 5 HOH 31 735 69 HOH TIP B . J 5 HOH 32 736 71 HOH TIP B . J 5 HOH 33 737 72 HOH TIP B . J 5 HOH 34 738 73 HOH TIP B . J 5 HOH 35 739 77 HOH TIP B . J 5 HOH 36 740 79 HOH TIP B . J 5 HOH 37 741 81 HOH TIP B . J 5 HOH 38 742 85 HOH TIP B . J 5 HOH 39 743 88 HOH TIP B . J 5 HOH 40 744 89 HOH TIP B . J 5 HOH 41 745 90 HOH TIP B . J 5 HOH 42 746 93 HOH TIP B . J 5 HOH 43 747 94 HOH TIP B . J 5 HOH 44 748 95 HOH TIP B . J 5 HOH 45 749 96 HOH TIP B . J 5 HOH 46 750 101 HOH TIP B . J 5 HOH 47 751 102 HOH TIP B . J 5 HOH 48 752 110 HOH TIP B . J 5 HOH 49 753 112 HOH TIP B . J 5 HOH 50 754 113 HOH TIP B . J 5 HOH 51 755 114 HOH TIP B . J 5 HOH 52 756 116 HOH TIP B . J 5 HOH 53 757 118 HOH TIP B . J 5 HOH 54 758 119 HOH TIP B . J 5 HOH 55 759 120 HOH TIP B . J 5 HOH 56 760 121 HOH TIP B . J 5 HOH 57 761 122 HOH TIP B . J 5 HOH 58 762 123 HOH TIP B . J 5 HOH 59 763 124 HOH TIP B . J 5 HOH 60 764 126 HOH TIP B . J 5 HOH 61 765 127 HOH TIP B . J 5 HOH 62 766 129 HOH TIP B . J 5 HOH 63 767 130 HOH TIP B . J 5 HOH 64 768 133 HOH TIP B . J 5 HOH 65 769 135 HOH TIP B . J 5 HOH 66 770 136 HOH TIP B . J 5 HOH 67 771 142 HOH TIP B . J 5 HOH 68 772 144 HOH TIP B . J 5 HOH 69 773 145 HOH TIP B . J 5 HOH 70 774 148 HOH TIP B . J 5 HOH 71 775 149 HOH TIP B . J 5 HOH 72 776 150 HOH TIP B . J 5 HOH 73 777 153 HOH TIP B . J 5 HOH 74 778 154 HOH TIP B . J 5 HOH 75 779 158 HOH TIP B . J 5 HOH 76 780 160 HOH TIP B . J 5 HOH 77 781 161 HOH TIP B . J 5 HOH 78 782 162 HOH TIP B . J 5 HOH 79 783 163 HOH TIP B . J 5 HOH 80 784 167 HOH TIP B . J 5 HOH 81 785 169 HOH TIP B . J 5 HOH 82 786 171 HOH TIP B . J 5 HOH 83 787 172 HOH TIP B . J 5 HOH 84 788 173 HOH TIP B . J 5 HOH 85 789 176 HOH TIP B . J 5 HOH 86 790 177 HOH TIP B . J 5 HOH 87 791 178 HOH TIP B . J 5 HOH 88 792 182 HOH TIP B . J 5 HOH 89 793 184 HOH TIP B . J 5 HOH 90 794 191 HOH TIP B . J 5 HOH 91 795 193 HOH TIP B . J 5 HOH 92 796 194 HOH TIP B . J 5 HOH 93 797 196 HOH TIP B . J 5 HOH 94 798 203 HOH TIP B . J 5 HOH 95 799 206 HOH TIP B . J 5 HOH 96 800 207 HOH TIP B . J 5 HOH 97 801 209 HOH TIP B . J 5 HOH 98 802 210 HOH TIP B . J 5 HOH 99 803 212 HOH TIP B . J 5 HOH 100 804 213 HOH TIP B . J 5 HOH 101 805 216 HOH TIP B . J 5 HOH 102 806 218 HOH TIP B . J 5 HOH 103 807 219 HOH TIP B . J 5 HOH 104 808 220 HOH TIP B . J 5 HOH 105 809 221 HOH TIP B . J 5 HOH 106 810 225 HOH TIP B . J 5 HOH 107 811 230 HOH TIP B . J 5 HOH 108 812 233 HOH TIP B . J 5 HOH 109 813 235 HOH TIP B . J 5 HOH 110 814 237 HOH TIP B . J 5 HOH 111 815 238 HOH TIP B . J 5 HOH 112 816 242 HOH TIP B . J 5 HOH 113 817 243 HOH TIP B . J 5 HOH 114 818 244 HOH TIP B . J 5 HOH 115 819 245 HOH TIP B . J 5 HOH 116 820 247 HOH TIP B . J 5 HOH 117 821 248 HOH TIP B . J 5 HOH 118 822 250 HOH TIP B . J 5 HOH 119 823 251 HOH TIP B . J 5 HOH 120 824 255 HOH TIP B . J 5 HOH 121 825 256 HOH TIP B . J 5 HOH 122 826 257 HOH TIP B . J 5 HOH 123 827 258 HOH TIP B . J 5 HOH 124 828 260 HOH TIP B . J 5 HOH 125 829 263 HOH TIP B . J 5 HOH 126 830 264 HOH TIP B . J 5 HOH 127 831 265 HOH TIP B . J 5 HOH 128 832 266 HOH TIP B . J 5 HOH 129 833 267 HOH TIP B . J 5 HOH 130 834 269 HOH TIP B . J 5 HOH 131 835 272 HOH TIP B . J 5 HOH 132 836 273 HOH TIP B . J 5 HOH 133 837 274 HOH TIP B . J 5 HOH 134 838 276 HOH TIP B . J 5 HOH 135 839 277 HOH TIP B . J 5 HOH 136 840 280 HOH TIP B . J 5 HOH 137 841 281 HOH TIP B . J 5 HOH 138 842 283 HOH TIP B . J 5 HOH 139 843 287 HOH TIP B . J 5 HOH 140 844 288 HOH TIP B . J 5 HOH 141 845 289 HOH TIP B . J 5 HOH 142 846 290 HOH TIP B . J 5 HOH 143 847 292 HOH TIP B . J 5 HOH 144 848 293 HOH TIP B . J 5 HOH 145 849 295 HOH TIP B . J 5 HOH 146 850 296 HOH TIP B . J 5 HOH 147 851 298 HOH TIP B . J 5 HOH 148 852 305 HOH TIP B . J 5 HOH 149 853 306 HOH TIP B . J 5 HOH 150 854 308 HOH TIP B . J 5 HOH 151 855 309 HOH TIP B . J 5 HOH 152 856 310 HOH TIP B . J 5 HOH 153 857 312 HOH TIP B . J 5 HOH 154 858 313 HOH TIP B . J 5 HOH 155 859 314 HOH TIP B . J 5 HOH 156 860 315 HOH TIP B . J 5 HOH 157 861 317 HOH TIP B . J 5 HOH 158 862 320 HOH TIP B . J 5 HOH 159 863 323 HOH TIP B . J 5 HOH 160 864 329 HOH TIP B . J 5 HOH 161 865 331 HOH TIP B . J 5 HOH 162 866 333 HOH TIP B . J 5 HOH 163 867 336 HOH TIP B . J 5 HOH 164 868 337 HOH TIP B . J 5 HOH 165 869 338 HOH TIP B . J 5 HOH 166 870 343 HOH TIP B . J 5 HOH 167 871 347 HOH TIP B . J 5 HOH 168 872 348 HOH TIP B . J 5 HOH 169 873 349 HOH TIP B . J 5 HOH 170 874 354 HOH TIP B . J 5 HOH 171 875 355 HOH TIP B . J 5 HOH 172 876 357 HOH TIP B . J 5 HOH 173 877 358 HOH TIP B . J 5 HOH 174 878 360 HOH TIP B . J 5 HOH 175 879 362 HOH TIP B . J 5 HOH 176 880 363 HOH TIP B . J 5 HOH 177 881 364 HOH TIP B . J 5 HOH 178 882 365 HOH TIP B . J 5 HOH 179 883 366 HOH TIP B . J 5 HOH 180 884 367 HOH TIP B . J 5 HOH 181 885 368 HOH TIP B . J 5 HOH 182 886 372 HOH TIP B . J 5 HOH 183 887 373 HOH TIP B . J 5 HOH 184 888 374 HOH TIP B . J 5 HOH 185 889 375 HOH TIP B . J 5 HOH 186 890 376 HOH TIP B . J 5 HOH 187 891 377 HOH TIP B . J 5 HOH 188 892 379 HOH TIP B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 24130 ? 1 MORE -314 ? 1 'SSA (A^2)' 33980 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 69.8020000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 34.9010000000 -0.8660254038 -0.5000000000 0.0000000000 60.4503052350 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? I HOH . ? A HOH 760 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 765 ? 1_555 97.5 ? 2 O ? I HOH . ? A HOH 760 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 769 ? 1_555 95.4 ? 3 O ? I HOH . ? A HOH 765 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O ? I HOH . ? A HOH 769 ? 1_555 97.0 ? 4 O ? I HOH . ? A HOH 760 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1B ? F GDP . ? A GDP 501 ? 1_555 111.5 ? 5 O ? I HOH . ? A HOH 765 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1B ? F GDP . ? A GDP 501 ? 1_555 148.9 ? 6 O ? I HOH . ? A HOH 769 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1B ? F GDP . ? A GDP 501 ? 1_555 91.4 ? 7 O ? I HOH . ? A HOH 760 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1A ? F GDP . ? A GDP 501 ? 1_555 94.7 ? 8 O ? I HOH . ? A HOH 765 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1A ? F GDP . ? A GDP 501 ? 1_555 98.3 ? 9 O ? I HOH . ? A HOH 769 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1A ? F GDP . ? A GDP 501 ? 1_555 160.4 ? 10 O1B ? F GDP . ? A GDP 501 ? 1_555 MG ? C MG . ? A MG 601 ? 1_555 O1A ? F GDP . ? A GDP 501 ? 1_555 69.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CrystalClear 'data collection' '(MSC/RIGAKU)' ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 41 ? ? -172.59 140.16 2 1 LEU A 113 ? ? -171.23 -64.66 3 1 SER A 116 ? ? -111.93 -136.33 4 1 ASN A 121 ? ? -140.14 39.30 5 1 VAL A 122 ? ? 64.60 -52.05 6 1 MET B 41 ? ? -170.26 142.69 7 1 LEU B 113 ? ? -169.47 -62.62 8 1 SER B 116 ? ? -110.39 -138.53 9 1 VAL B 122 ? ? 65.29 -56.32 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A PHE 2 ? A PHE 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A MET 4 ? A MET 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A ILE 160 ? A ILE 160 7 1 Y 1 B MET 1 ? B MET 1 8 1 Y 1 B PHE 2 ? B PHE 2 9 1 Y 1 B GLN 3 ? B GLN 3 10 1 Y 1 B MET 4 ? B MET 4 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 "GUANOSINE-5'-DIPHOSPHATE" GDP 5 water HOH #