HEADER TRANSFERASE 08-SEP-06 2DY9 TITLE CRYSTAL STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDK, NDP KINASE, NUCLEOSIDE-2-P KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: NDK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS NUCLEOSIDE BINDING, KINASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KATO-MURAYAMA,K.MURAYAMA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2DY9 1 REMARK LINK REVDAT 3 13-JUL-11 2DY9 1 VERSN REVDAT 2 24-FEB-09 2DY9 1 VERSN REVDAT 1 08-MAR-07 2DY9 0 JRNL AUTH M.KATO-MURAYAMA,K.MURAYAMA,T.TERADA,M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE IN JRNL TITL 2 COMPLEX WITH ADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1475359.530 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 918 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2342 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 106 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2493 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28900 REMARK 3 B22 (A**2) : 0.28900 REMARK 3 B33 (A**2) : -0.57700 REMARK 3 B12 (A**2) : -0.39100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.170 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.870 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.860 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.720 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 49.04 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ADP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ADP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS IS A TWINNED STRUCTURE. THE REMARK 3 TWINNING OPERATOR IS (H,K,L) -> (H,-H-K,-L) AND THE TWINNING REMARK 3 FRACTION IS 0.404. REMARK 4 REMARK 4 2DY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000025992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFORCAL MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 34.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CWK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CITRATE, BICINE, 1MM ADP, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.44850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.44850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.44850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 23970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -295.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 69.83500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 34.91750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 60.47888 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 GLN A 3 REMARK 465 MET A 4 REMARK 465 GLY A 159 REMARK 465 ILE A 160 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 GLN B 3 REMARK 465 MET B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 41 138.70 -179.99 REMARK 500 LEU A 113 -64.89 -172.25 REMARK 500 SER A 116 -138.44 -124.58 REMARK 500 VAL A 122 -55.01 66.00 REMARK 500 MET B 41 146.18 -172.10 REMARK 500 LYS B 42 149.99 -174.35 REMARK 500 GLU B 60 35.52 -96.24 REMARK 500 LEU B 113 -68.23 -172.72 REMARK 500 SER B 116 -136.88 -108.89 REMARK 500 VAL B 122 -62.57 62.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O1A REMARK 620 2 ADP A 501 O1B 65.3 REMARK 620 3 HOH A 732 O 96.0 149.6 REMARK 620 4 HOH A 735 O 95.6 110.2 94.7 REMARK 620 5 HOH A 774 O 156.5 92.9 99.6 100.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DYA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH TWO ADP MOLECULES REMARK 900 RELATED ID: PHO001000698.3 RELATED DB: TARGETDB DBREF 2DY9 A 4 160 UNP O58429 NDK_PYRHO 1 157 DBREF 2DY9 B 4 160 UNP O58429 NDK_PYRHO 1 157 SEQADV 2DY9 MET A 1 UNP O58429 SEE REMARK 999 SEQADV 2DY9 PHE A 2 UNP O58429 SEE REMARK 999 SEQADV 2DY9 GLN A 3 UNP O58429 SEE REMARK 999 SEQADV 2DY9 MET B 1 UNP O58429 SEE REMARK 999 SEQADV 2DY9 PHE B 2 UNP O58429 SEE REMARK 999 SEQADV 2DY9 GLN B 3 UNP O58429 SEE REMARK 999 SEQRES 1 A 160 MET PHE GLN MET SER GLU THR GLU ARG THR LEU VAL ILE SEQRES 2 A 160 ILE LYS PRO ASP ALA VAL VAL ARG GLY LEU ILE GLY GLU SEQRES 3 A 160 ILE ILE SER ARG PHE GLU LYS LYS GLY LEU LYS ILE VAL SEQRES 4 A 160 GLY MET LYS MET ILE TRP ILE ASP ARG GLU LEU ALA GLU SEQRES 5 A 160 LYS HIS TYR GLU GLU HIS ARG GLU LYS PRO PHE PHE LYS SEQRES 6 A 160 ALA LEU ILE ASP TYR ILE THR LYS THR PRO VAL VAL VAL SEQRES 7 A 160 MET VAL LEU GLU GLY ARG TYR ALA VAL GLU VAL VAL ARG SEQRES 8 A 160 LYS MET ALA GLY ALA THR ASP PRO LYS ASP ALA ALA PRO SEQRES 9 A 160 GLY THR ILE ARG GLY ASP PHE GLY LEU GLU VAL SER ASP SEQRES 10 A 160 ALA ILE CYS ASN VAL ILE HIS ALA SER ASP SER LYS GLU SEQRES 11 A 160 SER ALA GLU ARG GLU ILE SER LEU PHE PHE LYS PRO GLU SEQRES 12 A 160 GLU LEU PHE GLU TYR PRO ARG ALA ALA ASP TRP PHE TYR SEQRES 13 A 160 LYS LYS GLY ILE SEQRES 1 B 160 MET PHE GLN MET SER GLU THR GLU ARG THR LEU VAL ILE SEQRES 2 B 160 ILE LYS PRO ASP ALA VAL VAL ARG GLY LEU ILE GLY GLU SEQRES 3 B 160 ILE ILE SER ARG PHE GLU LYS LYS GLY LEU LYS ILE VAL SEQRES 4 B 160 GLY MET LYS MET ILE TRP ILE ASP ARG GLU LEU ALA GLU SEQRES 5 B 160 LYS HIS TYR GLU GLU HIS ARG GLU LYS PRO PHE PHE LYS SEQRES 6 B 160 ALA LEU ILE ASP TYR ILE THR LYS THR PRO VAL VAL VAL SEQRES 7 B 160 MET VAL LEU GLU GLY ARG TYR ALA VAL GLU VAL VAL ARG SEQRES 8 B 160 LYS MET ALA GLY ALA THR ASP PRO LYS ASP ALA ALA PRO SEQRES 9 B 160 GLY THR ILE ARG GLY ASP PHE GLY LEU GLU VAL SER ASP SEQRES 10 B 160 ALA ILE CYS ASN VAL ILE HIS ALA SER ASP SER LYS GLU SEQRES 11 B 160 SER ALA GLU ARG GLU ILE SER LEU PHE PHE LYS PRO GLU SEQRES 12 B 160 GLU LEU PHE GLU TYR PRO ARG ALA ALA ASP TRP PHE TYR SEQRES 13 B 160 LYS LYS GLY ILE HET MG A 601 1 HET CL A 701 1 HET CL A 702 1 HET ADP A 501 27 HET CL B 703 1 HET CL B 704 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 CL 4(CL 1-) FORMUL 6 ADP C10 H15 N5 O10 P2 FORMUL 9 HOH *221(H2 O) HELIX 1 1 LYS A 15 GLY A 22 1 8 HELIX 2 2 LEU A 23 GLY A 35 1 13 HELIX 3 3 ASP A 47 TYR A 55 1 9 HELIX 4 4 GLU A 56 ARG A 59 5 4 HELIX 5 5 PHE A 63 THR A 72 1 10 HELIX 6 6 TYR A 85 GLY A 95 1 11 HELIX 7 7 THR A 106 GLY A 112 1 7 HELIX 8 8 SER A 128 PHE A 140 1 13 HELIX 9 9 LYS A 141 LEU A 145 5 5 HELIX 10 10 ALA A 152 LYS A 157 1 6 HELIX 11 11 LYS B 15 ARG B 21 1 7 HELIX 12 12 LEU B 23 GLY B 35 1 13 HELIX 13 13 ASP B 47 TYR B 55 1 9 HELIX 14 14 GLU B 56 ARG B 59 5 4 HELIX 15 15 PHE B 63 THR B 72 1 10 HELIX 16 16 TYR B 85 GLY B 95 1 11 HELIX 17 17 THR B 106 GLY B 112 1 7 HELIX 18 18 SER B 128 PHE B 140 1 13 HELIX 19 19 LYS B 141 LEU B 145 5 5 HELIX 20 20 ARG B 150 LYS B 157 5 8 SHEET 1 A 4 LYS A 37 ILE A 44 0 SHEET 2 A 4 VAL A 76 ARG A 84 -1 O GLU A 82 N LYS A 37 SHEET 3 A 4 THR A 7 ILE A 14 -1 N VAL A 12 O MET A 79 SHEET 4 A 4 ILE A 123 ALA A 125 -1 O HIS A 124 N ILE A 13 SHEET 1 B 4 LYS B 37 ILE B 44 0 SHEET 2 B 4 VAL B 76 ARG B 84 -1 O GLU B 82 N LYS B 37 SHEET 3 B 4 THR B 7 ILE B 14 -1 N ILE B 14 O VAL B 77 SHEET 4 B 4 ILE B 123 ALA B 125 -1 O HIS B 124 N ILE B 13 LINK O1A ADP A 501 MG MG A 601 1555 1555 2.29 LINK O1B ADP A 501 MG MG A 601 1555 1555 2.48 LINK MG MG A 601 O HOH A 732 1555 1555 2.61 LINK MG MG A 601 O HOH A 735 1555 1555 2.26 LINK MG MG A 601 O HOH A 774 1555 1555 2.39 SITE 1 AC1 4 ADP A 501 HOH A 732 HOH A 735 HOH A 774 SITE 1 AC2 3 ALA A 96 ALA A 102 ALA A 103 SITE 1 AC3 3 ARG A 150 ALA A 151 ALA A 152 SITE 1 AC4 3 GLY B 95 ALA B 96 ALA B 103 SITE 1 AC5 3 ARG B 150 ALA B 151 ALA B 152 SITE 1 AC6 14 LYS A 15 HIS A 58 PHE A 63 LEU A 67 SITE 2 AC6 14 ARG A 91 THR A 97 ARG A 108 ILE A 119 SITE 3 AC6 14 ASN A 121 MG A 601 HOH A 714 HOH A 730 SITE 4 AC6 14 HOH A 754 HOH A 764 CRYST1 69.835 69.835 106.897 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014319 0.008267 0.000000 0.00000 SCALE2 0.000000 0.016535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009355 0.00000