data_2DYK # _entry.id 2DYK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DYK pdb_00002dyk 10.2210/pdb2dyk/pdb RCSB RCSB026003 ? ? WWPDB D_1000026003 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001388.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DYK _pdbx_database_status.recvd_initial_deposition_date 2006-09-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kawazoe, M.' 1 'Takemoto, C.' 2 'Fusatomi, E.' 3 'Terada, T.' 4 'Shirouzu, M.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kawazoe, M.' 1 ? primary 'Takemoto, C.' 2 ? primary 'Fusatomi, E.' 3 ? primary 'Terada, T.' 4 ? primary 'Shirouzu, M.' 5 ? primary 'Yokoyama, S.' 6 ? # _cell.entry_id 2DYK _cell.length_a 35.421 _cell.length_b 50.539 _cell.length_c 50.453 _cell.angle_alpha 119.88 _cell.angle_beta 90.02 _cell.angle_gamma 88.91 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DYK _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTP-binding protein' 17987.641 2 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 2 ? ? ? ? 3 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL P ; _entity_poly.pdbx_seq_one_letter_code_can ;MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL P ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ttk003001388.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 LYS n 1 4 VAL n 1 5 VAL n 1 6 ILE n 1 7 VAL n 1 8 GLY n 1 9 ARG n 1 10 PRO n 1 11 ASN n 1 12 VAL n 1 13 GLY n 1 14 LYS n 1 15 SER n 1 16 SER n 1 17 LEU n 1 18 PHE n 1 19 ASN n 1 20 ARG n 1 21 LEU n 1 22 LEU n 1 23 LYS n 1 24 LYS n 1 25 ARG n 1 26 SER n 1 27 ALA n 1 28 VAL n 1 29 VAL n 1 30 ALA n 1 31 ASP n 1 32 VAL n 1 33 PRO n 1 34 GLY n 1 35 VAL n 1 36 THR n 1 37 ARG n 1 38 ASP n 1 39 LEU n 1 40 LYS n 1 41 GLU n 1 42 GLY n 1 43 VAL n 1 44 VAL n 1 45 GLU n 1 46 THR n 1 47 ASP n 1 48 ARG n 1 49 GLY n 1 50 ARG n 1 51 PHE n 1 52 LEU n 1 53 LEU n 1 54 VAL n 1 55 ASP n 1 56 THR n 1 57 GLY n 1 58 GLY n 1 59 LEU n 1 60 TRP n 1 61 SER n 1 62 GLY n 1 63 ASP n 1 64 LYS n 1 65 TRP n 1 66 GLU n 1 67 LYS n 1 68 LYS n 1 69 ILE n 1 70 GLN n 1 71 GLU n 1 72 LYS n 1 73 VAL n 1 74 ASP n 1 75 ARG n 1 76 ALA n 1 77 LEU n 1 78 GLU n 1 79 ASP n 1 80 ALA n 1 81 GLU n 1 82 VAL n 1 83 VAL n 1 84 LEU n 1 85 PHE n 1 86 ALA n 1 87 VAL n 1 88 ASP n 1 89 GLY n 1 90 ARG n 1 91 ALA n 1 92 GLU n 1 93 LEU n 1 94 THR n 1 95 GLN n 1 96 ALA n 1 97 ASP n 1 98 TYR n 1 99 GLU n 1 100 VAL n 1 101 ALA n 1 102 GLU n 1 103 TYR n 1 104 LEU n 1 105 ARG n 1 106 ARG n 1 107 LYS n 1 108 GLY n 1 109 LYS n 1 110 PRO n 1 111 VAL n 1 112 ILE n 1 113 LEU n 1 114 VAL n 1 115 ALA n 1 116 THR n 1 117 LYS n 1 118 VAL n 1 119 ASP n 1 120 ASP n 1 121 PRO n 1 122 LYS n 1 123 HIS n 1 124 GLU n 1 125 LEU n 1 126 TYR n 1 127 LEU n 1 128 GLY n 1 129 PRO n 1 130 LEU n 1 131 TYR n 1 132 GLY n 1 133 LEU n 1 134 GLY n 1 135 PHE n 1 136 GLY n 1 137 ASP n 1 138 PRO n 1 139 ILE n 1 140 PRO n 1 141 THR n 1 142 SER n 1 143 SER n 1 144 GLU n 1 145 HIS n 1 146 ALA n 1 147 ARG n 1 148 GLY n 1 149 LEU n 1 150 GLU n 1 151 GLU n 1 152 LEU n 1 153 LEU n 1 154 GLU n 1 155 ALA n 1 156 ILE n 1 157 TRP n 1 158 GLU n 1 159 ARG n 1 160 LEU n 1 161 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene TTHA1391 _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SIH8_THET8 _struct_ref.pdbx_db_accession Q5SIH8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA EVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL PVRQIETEPEVAGIRLAIVGRPNAGKSSLLNAILGEERVIVSEEPGTTRDAIDVEFFFGGQRFVLVDTAGIRKRPENLVE ELAIRRSLRAMDEADVVLLVVDPFQVGDRELKLANEALDRGKPVLLVITKWDLVDKEDAPKMRRLLREKLAHLDHLPRVF TSALTRQNLDRIFREAVRLHELNQTRVPTAELNRWVAVWTSRVQMPNFKGKPLKILYATQPEVAPPTFVFFVNHPEFVTR AFENYLKNRIGEDLGLREVPFRLVFRGRREE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DYK A 1 ? 161 ? Q5SIH8 1 ? 161 ? 1 161 2 1 2DYK B 1 ? 161 ? Q5SIH8 1 ? 161 ? 1 161 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DYK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 43.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '0.1M MES pH 6.0, 1.0M Pottasium sodium tartrate, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-04-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2DYK _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 43.9 _reflns.d_resolution_high 1.96 _reflns.number_obs 20112 _reflns.number_all ? _reflns.percent_possible_obs 92.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.048 _reflns.pdbx_netI_over_sigmaI 14.9 _reflns.B_iso_Wilson_estimate 11.3 _reflns.pdbx_redundancy 1.91 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.96 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 78.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.177 _reflns_shell.meanI_over_sigI_obs 2.56 _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1713 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2DYK _refine.ls_number_reflns_obs 20112 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 576181.42 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.81 _refine.ls_d_res_high 1.96 _refine.ls_percent_reflns_obs 92.4 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.195 _refine.ls_R_factor_R_free 0.225 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 976 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.0 _refine.aniso_B[1][1] -1.58 _refine.aniso_B[2][2] 3.31 _refine.aniso_B[3][3] -1.73 _refine.aniso_B[1][2] -2.02 _refine.aniso_B[1][3] -0.56 _refine.aniso_B[2][3] 2.83 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.376128 _refine.solvent_model_param_bsol 41.9892 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1MKY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DYK _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.14 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2386 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 2586 _refine_hist.d_res_high 1.96 _refine_hist.d_res_low 43.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.37 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.00 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.85 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.32 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 4.90 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.96 _refine_ls_shell.d_res_low 2.08 _refine_ls_shell.number_reflns_R_work 2991 _refine_ls_shell.R_factor_R_work 0.222 _refine_ls_shell.percent_reflns_obs 86.9 _refine_ls_shell.R_factor_R_free 0.268 _refine_ls_shell.R_factor_R_free_error 0.021 _refine_ls_shell.percent_reflns_R_free 5.3 _refine_ls_shell.number_reflns_R_free 166 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 gdp.param gdp.top 'X-RAY DIFFRACTION' # _struct.entry_id 2DYK _struct.title 'Crystal structure of N-terminal GTP-binding domain of EngA from Thermus thermophilus HB8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DYK _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text ;GTPase, ribosome-binding protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RIBOSOME ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 13 ? LYS A 24 ? GLY A 13 LYS A 24 1 ? 12 HELX_P HELX_P2 2 GLY A 57 ? TRP A 60 ? GLY A 57 TRP A 60 5 ? 4 HELX_P HELX_P3 3 GLU A 66 ? LEU A 77 ? GLU A 66 LEU A 77 1 ? 12 HELX_P HELX_P4 4 THR A 94 ? GLY A 108 ? THR A 94 GLY A 108 1 ? 15 HELX_P HELX_P5 5 ASP A 120 ? GLY A 134 ? ASP A 120 GLY A 134 5 ? 15 HELX_P HELX_P6 6 GLY A 148 ? LEU A 160 ? GLY A 148 LEU A 160 1 ? 13 HELX_P HELX_P7 7 GLY B 13 ? LYS B 24 ? GLY B 13 LYS B 24 1 ? 12 HELX_P HELX_P8 8 GLY B 57 ? TRP B 60 ? GLY B 57 TRP B 60 5 ? 4 HELX_P HELX_P9 9 GLU B 66 ? LEU B 77 ? GLU B 66 LEU B 77 1 ? 12 HELX_P HELX_P10 10 THR B 94 ? GLY B 108 ? THR B 94 GLY B 108 1 ? 15 HELX_P HELX_P11 11 ASP B 120 ? LEU B 133 ? ASP B 120 LEU B 133 5 ? 14 HELX_P HELX_P12 12 GLY B 148 ? LEU B 160 ? GLY B 148 LEU B 160 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 40 ? THR A 46 ? LYS A 40 THR A 46 A 2 GLY A 49 ? ASP A 55 ? GLY A 49 ASP A 55 A 3 HIS A 2 ? VAL A 7 ? HIS A 2 VAL A 7 A 4 VAL A 82 ? ASP A 88 ? VAL A 82 ASP A 88 A 5 VAL A 111 ? THR A 116 ? VAL A 111 THR A 116 A 6 ILE A 139 ? PRO A 140 ? ILE A 139 PRO A 140 B 1 LYS B 40 ? THR B 46 ? LYS B 40 THR B 46 B 2 GLY B 49 ? ASP B 55 ? GLY B 49 ASP B 55 B 3 HIS B 2 ? VAL B 7 ? HIS B 2 VAL B 7 B 4 VAL B 82 ? ASP B 88 ? VAL B 82 ASP B 88 B 5 VAL B 111 ? THR B 116 ? VAL B 111 THR B 116 B 6 ILE B 139 ? PRO B 140 ? ILE B 139 PRO B 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 42 ? N GLY A 42 O LEU A 53 ? O LEU A 53 A 2 3 O VAL A 54 ? O VAL A 54 N ILE A 6 ? N ILE A 6 A 3 4 N VAL A 5 ? N VAL A 5 O LEU A 84 ? O LEU A 84 A 4 5 N VAL A 83 ? N VAL A 83 O ILE A 112 ? O ILE A 112 A 5 6 N LEU A 113 ? N LEU A 113 O ILE A 139 ? O ILE A 139 B 1 2 N GLY B 42 ? N GLY B 42 O LEU B 53 ? O LEU B 53 B 2 3 O VAL B 54 ? O VAL B 54 N ILE B 6 ? N ILE B 6 B 3 4 N VAL B 7 ? N VAL B 7 O ALA B 86 ? O ALA B 86 B 4 5 N VAL B 83 ? N VAL B 83 O ILE B 112 ? O ILE B 112 B 5 6 N LEU B 113 ? N LEU B 113 O ILE B 139 ? O ILE B 139 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 501 ? 20 'BINDING SITE FOR RESIDUE GDP A 501' AC2 Software B GDP 502 ? 19 'BINDING SITE FOR RESIDUE GDP B 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 ASN A 11 ? ASN A 11 . ? 1_555 ? 2 AC1 20 VAL A 12 ? VAL A 12 . ? 1_555 ? 3 AC1 20 GLY A 13 ? GLY A 13 . ? 1_555 ? 4 AC1 20 LYS A 14 ? LYS A 14 . ? 1_555 ? 5 AC1 20 SER A 15 ? SER A 15 . ? 1_555 ? 6 AC1 20 SER A 16 ? SER A 16 . ? 1_555 ? 7 AC1 20 ARG A 90 ? ARG A 90 . ? 1_555 ? 8 AC1 20 LYS A 117 ? LYS A 117 . ? 1_555 ? 9 AC1 20 ASP A 119 ? ASP A 119 . ? 1_555 ? 10 AC1 20 SER A 142 ? SER A 142 . ? 1_555 ? 11 AC1 20 SER A 143 ? SER A 143 . ? 1_555 ? 12 AC1 20 GLU A 144 ? GLU A 144 . ? 1_555 ? 13 AC1 20 HOH E . ? HOH A 605 . ? 1_555 ? 14 AC1 20 HOH E . ? HOH A 611 . ? 1_555 ? 15 AC1 20 HOH E . ? HOH A 646 . ? 1_555 ? 16 AC1 20 HOH E . ? HOH A 677 . ? 1_555 ? 17 AC1 20 HOH E . ? HOH A 684 . ? 1_555 ? 18 AC1 20 GLU B 102 ? GLU B 102 . ? 1_555 ? 19 AC1 20 ARG B 105 ? ARG B 105 . ? 1_555 ? 20 AC1 20 ARG B 106 ? ARG B 106 . ? 1_555 ? 21 AC2 19 GLU A 102 ? GLU A 102 . ? 1_554 ? 22 AC2 19 ARG A 105 ? ARG A 105 . ? 1_554 ? 23 AC2 19 ARG A 106 ? ARG A 106 . ? 1_554 ? 24 AC2 19 ASN B 11 ? ASN B 11 . ? 1_555 ? 25 AC2 19 VAL B 12 ? VAL B 12 . ? 1_555 ? 26 AC2 19 GLY B 13 ? GLY B 13 . ? 1_555 ? 27 AC2 19 LYS B 14 ? LYS B 14 . ? 1_555 ? 28 AC2 19 SER B 15 ? SER B 15 . ? 1_555 ? 29 AC2 19 SER B 16 ? SER B 16 . ? 1_555 ? 30 AC2 19 ARG B 90 ? ARG B 90 . ? 1_555 ? 31 AC2 19 LYS B 117 ? LYS B 117 . ? 1_555 ? 32 AC2 19 ASP B 119 ? ASP B 119 . ? 1_555 ? 33 AC2 19 SER B 142 ? SER B 142 . ? 1_555 ? 34 AC2 19 SER B 143 ? SER B 143 . ? 1_555 ? 35 AC2 19 GLU B 144 ? GLU B 144 . ? 1_555 ? 36 AC2 19 HOH F . ? HOH B 606 . ? 1_555 ? 37 AC2 19 HOH F . ? HOH B 608 . ? 1_555 ? 38 AC2 19 HOH F . ? HOH B 617 . ? 1_555 ? 39 AC2 19 HOH F . ? HOH B 687 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DYK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DYK _atom_sites.fract_transf_matrix[1][1] 0.028232 _atom_sites.fract_transf_matrix[1][2] -0.000537 _atom_sites.fract_transf_matrix[1][3] -0.000297 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019790 _atom_sites.fract_transf_matrix[2][3] 0.011373 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022860 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 HIS 2 2 2 HIS HIS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ALA 27 27 ? ? ? A . n A 1 28 VAL 28 28 ? ? ? A . n A 1 29 VAL 29 29 ? ? ? A . n A 1 30 ALA 30 30 ? ? ? A . n A 1 31 ASP 31 31 ? ? ? A . n A 1 32 VAL 32 32 ? ? ? A . n A 1 33 PRO 33 33 ? ? ? A . n A 1 34 GLY 34 34 ? ? ? A . n A 1 35 VAL 35 35 ? ? ? A . n A 1 36 THR 36 36 ? ? ? A . n A 1 37 ARG 37 37 ? ? ? A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 TRP 65 65 65 TRP TRP A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 TYR 98 98 98 TYR TYR A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 HIS 123 123 123 HIS HIS A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TYR 126 126 126 TYR TYR A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 LEU 133 133 133 LEU LEU A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 TRP 157 157 157 TRP TRP A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ARG 159 159 159 ARG ARG A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 PRO 161 161 161 PRO PRO A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 HIS 2 2 2 HIS HIS B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 ASN 11 11 11 ASN ASN B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 PHE 18 18 18 PHE PHE B . n B 1 19 ASN 19 19 19 ASN ASN B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 LYS 23 23 23 LYS LYS B . n B 1 24 LYS 24 24 24 LYS LYS B . n B 1 25 ARG 25 25 25 ARG ARG B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 ALA 27 27 ? ? ? B . n B 1 28 VAL 28 28 ? ? ? B . n B 1 29 VAL 29 29 ? ? ? B . n B 1 30 ALA 30 30 ? ? ? B . n B 1 31 ASP 31 31 ? ? ? B . n B 1 32 VAL 32 32 ? ? ? B . n B 1 33 PRO 33 33 ? ? ? B . n B 1 34 GLY 34 34 ? ? ? B . n B 1 35 VAL 35 35 ? ? ? B . n B 1 36 THR 36 36 ? ? ? B . n B 1 37 ARG 37 37 ? ? ? B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 LYS 40 40 40 LYS LYS B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 GLY 42 42 42 GLY GLY B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 THR 46 46 46 THR THR B . n B 1 47 ASP 47 47 47 ASP ASP B . n B 1 48 ARG 48 48 48 ARG ARG B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ARG 50 50 50 ARG ARG B . n B 1 51 PHE 51 51 51 PHE PHE B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 ASP 55 55 55 ASP ASP B . n B 1 56 THR 56 56 56 THR THR B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 GLY 58 58 58 GLY GLY B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 TRP 60 60 60 TRP TRP B . n B 1 61 SER 61 61 61 SER SER B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 ASP 63 63 63 ASP ASP B . n B 1 64 LYS 64 64 64 LYS LYS B . n B 1 65 TRP 65 65 65 TRP TRP B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 GLN 70 70 70 GLN GLN B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 LYS 72 72 72 LYS LYS B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 ASP 74 74 74 ASP ASP B . n B 1 75 ARG 75 75 75 ARG ARG B . n B 1 76 ALA 76 76 76 ALA ALA B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 ASP 79 79 79 ASP ASP B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 VAL 83 83 83 VAL VAL B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 PHE 85 85 85 PHE PHE B . n B 1 86 ALA 86 86 86 ALA ALA B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 ASP 88 88 88 ASP ASP B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 ARG 90 90 90 ARG ARG B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 THR 94 94 94 THR THR B . n B 1 95 GLN 95 95 95 GLN GLN B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 ASP 97 97 97 ASP ASP B . n B 1 98 TYR 98 98 98 TYR TYR B . n B 1 99 GLU 99 99 99 GLU GLU B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 ALA 101 101 101 ALA ALA B . n B 1 102 GLU 102 102 102 GLU GLU B . n B 1 103 TYR 103 103 103 TYR TYR B . n B 1 104 LEU 104 104 104 LEU LEU B . n B 1 105 ARG 105 105 105 ARG ARG B . n B 1 106 ARG 106 106 106 ARG ARG B . n B 1 107 LYS 107 107 107 LYS LYS B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 LYS 109 109 109 LYS LYS B . n B 1 110 PRO 110 110 110 PRO PRO B . n B 1 111 VAL 111 111 111 VAL VAL B . n B 1 112 ILE 112 112 112 ILE ILE B . n B 1 113 LEU 113 113 113 LEU LEU B . n B 1 114 VAL 114 114 114 VAL VAL B . n B 1 115 ALA 115 115 115 ALA ALA B . n B 1 116 THR 116 116 116 THR THR B . n B 1 117 LYS 117 117 117 LYS LYS B . n B 1 118 VAL 118 118 118 VAL VAL B . n B 1 119 ASP 119 119 119 ASP ASP B . n B 1 120 ASP 120 120 120 ASP ASP B . n B 1 121 PRO 121 121 121 PRO PRO B . n B 1 122 LYS 122 122 122 LYS LYS B . n B 1 123 HIS 123 123 123 HIS HIS B . n B 1 124 GLU 124 124 124 GLU GLU B . n B 1 125 LEU 125 125 125 LEU LEU B . n B 1 126 TYR 126 126 126 TYR TYR B . n B 1 127 LEU 127 127 127 LEU LEU B . n B 1 128 GLY 128 128 128 GLY GLY B . n B 1 129 PRO 129 129 129 PRO PRO B . n B 1 130 LEU 130 130 130 LEU LEU B . n B 1 131 TYR 131 131 131 TYR TYR B . n B 1 132 GLY 132 132 132 GLY GLY B . n B 1 133 LEU 133 133 133 LEU LEU B . n B 1 134 GLY 134 134 134 GLY GLY B . n B 1 135 PHE 135 135 135 PHE PHE B . n B 1 136 GLY 136 136 136 GLY GLY B . n B 1 137 ASP 137 137 137 ASP ASP B . n B 1 138 PRO 138 138 138 PRO PRO B . n B 1 139 ILE 139 139 139 ILE ILE B . n B 1 140 PRO 140 140 140 PRO PRO B . n B 1 141 THR 141 141 141 THR THR B . n B 1 142 SER 142 142 142 SER SER B . n B 1 143 SER 143 143 143 SER SER B . n B 1 144 GLU 144 144 144 GLU GLU B . n B 1 145 HIS 145 145 145 HIS HIS B . n B 1 146 ALA 146 146 146 ALA ALA B . n B 1 147 ARG 147 147 147 ARG ARG B . n B 1 148 GLY 148 148 148 GLY GLY B . n B 1 149 LEU 149 149 149 LEU LEU B . n B 1 150 GLU 150 150 150 GLU GLU B . n B 1 151 GLU 151 151 151 GLU GLU B . n B 1 152 LEU 152 152 152 LEU LEU B . n B 1 153 LEU 153 153 153 LEU LEU B . n B 1 154 GLU 154 154 154 GLU GLU B . n B 1 155 ALA 155 155 155 ALA ALA B . n B 1 156 ILE 156 156 156 ILE ILE B . n B 1 157 TRP 157 157 157 TRP TRP B . n B 1 158 GLU 158 158 158 GLU GLU B . n B 1 159 ARG 159 159 159 ARG ARG B . n B 1 160 LEU 160 160 160 LEU LEU B . n B 1 161 PRO 161 161 161 PRO PRO B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP 1 501 501 GDP GDP A . D 2 GDP 1 502 502 GDP GDP B . E 3 HOH 1 602 602 HOH HOH A . E 3 HOH 2 603 603 HOH HOH A . E 3 HOH 3 604 604 HOH HOH A . E 3 HOH 4 605 605 HOH HOH A . E 3 HOH 5 610 610 HOH HOH A . E 3 HOH 6 611 611 HOH HOH A . E 3 HOH 7 612 612 HOH HOH A . E 3 HOH 8 615 615 HOH HOH A . E 3 HOH 9 616 616 HOH HOH A . E 3 HOH 10 618 618 HOH HOH A . E 3 HOH 11 619 619 HOH HOH A . E 3 HOH 12 620 620 HOH HOH A . E 3 HOH 13 621 621 HOH HOH A . E 3 HOH 14 623 623 HOH HOH A . E 3 HOH 15 624 624 HOH HOH A . E 3 HOH 16 628 628 HOH HOH A . E 3 HOH 17 629 629 HOH HOH A . E 3 HOH 18 630 630 HOH HOH A . E 3 HOH 19 631 631 HOH HOH A . E 3 HOH 20 632 632 HOH HOH A . E 3 HOH 21 635 635 HOH HOH A . E 3 HOH 22 637 637 HOH HOH A . E 3 HOH 23 638 638 HOH HOH A . E 3 HOH 24 641 641 HOH HOH A . E 3 HOH 25 642 642 HOH HOH A . E 3 HOH 26 643 643 HOH HOH A . E 3 HOH 27 645 645 HOH HOH A . E 3 HOH 28 646 646 HOH HOH A . E 3 HOH 29 648 648 HOH HOH A . E 3 HOH 30 651 651 HOH HOH A . E 3 HOH 31 652 652 HOH HOH A . E 3 HOH 32 656 656 HOH HOH A . E 3 HOH 33 658 658 HOH HOH A . E 3 HOH 34 661 661 HOH HOH A . E 3 HOH 35 663 663 HOH HOH A . E 3 HOH 36 664 664 HOH HOH A . E 3 HOH 37 665 665 HOH HOH A . E 3 HOH 38 668 668 HOH HOH A . E 3 HOH 39 671 671 HOH HOH A . E 3 HOH 40 672 672 HOH HOH A . E 3 HOH 41 673 673 HOH HOH A . E 3 HOH 42 676 676 HOH HOH A . E 3 HOH 43 677 677 HOH HOH A . E 3 HOH 44 678 678 HOH HOH A . E 3 HOH 45 682 682 HOH HOH A . E 3 HOH 46 684 684 HOH HOH A . E 3 HOH 47 688 688 HOH HOH A . E 3 HOH 48 689 689 HOH HOH A . E 3 HOH 49 692 692 HOH HOH A . E 3 HOH 50 695 695 HOH HOH A . E 3 HOH 51 698 698 HOH HOH A . E 3 HOH 52 700 700 HOH HOH A . E 3 HOH 53 704 704 HOH HOH A . E 3 HOH 54 705 705 HOH HOH A . E 3 HOH 55 706 706 HOH HOH A . E 3 HOH 56 708 708 HOH HOH A . E 3 HOH 57 709 709 HOH HOH A . E 3 HOH 58 711 711 HOH HOH A . E 3 HOH 59 714 714 HOH HOH A . E 3 HOH 60 717 717 HOH HOH A . E 3 HOH 61 718 718 HOH HOH A . E 3 HOH 62 720 720 HOH HOH A . E 3 HOH 63 723 723 HOH HOH A . E 3 HOH 64 724 724 HOH HOH A . E 3 HOH 65 725 725 HOH HOH A . E 3 HOH 66 726 726 HOH HOH A . E 3 HOH 67 730 730 HOH HOH A . E 3 HOH 68 731 731 HOH HOH A . E 3 HOH 69 733 733 HOH HOH A . E 3 HOH 70 736 736 HOH HOH A . E 3 HOH 71 738 738 HOH HOH A . E 3 HOH 72 739 739 HOH HOH A . E 3 HOH 73 740 740 HOH HOH A . E 3 HOH 74 741 741 HOH HOH A . E 3 HOH 75 743 743 HOH HOH A . F 3 HOH 1 601 601 HOH HOH B . F 3 HOH 2 606 606 HOH HOH B . F 3 HOH 3 607 607 HOH HOH B . F 3 HOH 4 608 608 HOH HOH B . F 3 HOH 5 609 609 HOH HOH B . F 3 HOH 6 613 613 HOH HOH B . F 3 HOH 7 614 614 HOH HOH B . F 3 HOH 8 617 617 HOH HOH B . F 3 HOH 9 622 622 HOH HOH B . F 3 HOH 10 625 625 HOH HOH B . F 3 HOH 11 626 626 HOH HOH B . F 3 HOH 12 627 627 HOH HOH B . F 3 HOH 13 633 633 HOH HOH B . F 3 HOH 14 634 634 HOH HOH B . F 3 HOH 15 636 636 HOH HOH B . F 3 HOH 16 639 639 HOH HOH B . F 3 HOH 17 640 640 HOH HOH B . F 3 HOH 18 644 644 HOH HOH B . F 3 HOH 19 647 647 HOH HOH B . F 3 HOH 20 649 649 HOH HOH B . F 3 HOH 21 650 650 HOH HOH B . F 3 HOH 22 653 653 HOH HOH B . F 3 HOH 23 654 654 HOH HOH B . F 3 HOH 24 655 655 HOH HOH B . F 3 HOH 25 657 657 HOH HOH B . F 3 HOH 26 659 659 HOH HOH B . F 3 HOH 27 660 660 HOH HOH B . F 3 HOH 28 662 662 HOH HOH B . F 3 HOH 29 666 666 HOH HOH B . F 3 HOH 30 667 667 HOH HOH B . F 3 HOH 31 669 669 HOH HOH B . F 3 HOH 32 670 670 HOH HOH B . F 3 HOH 33 674 674 HOH HOH B . F 3 HOH 34 675 675 HOH HOH B . F 3 HOH 35 679 679 HOH HOH B . F 3 HOH 36 680 680 HOH HOH B . F 3 HOH 37 681 681 HOH HOH B . F 3 HOH 38 683 683 HOH HOH B . F 3 HOH 39 685 685 HOH HOH B . F 3 HOH 40 686 686 HOH HOH B . F 3 HOH 41 687 687 HOH HOH B . F 3 HOH 42 690 690 HOH HOH B . F 3 HOH 43 691 691 HOH HOH B . F 3 HOH 44 693 693 HOH HOH B . F 3 HOH 45 694 694 HOH HOH B . F 3 HOH 46 696 696 HOH HOH B . F 3 HOH 47 697 697 HOH HOH B . F 3 HOH 48 699 699 HOH HOH B . F 3 HOH 49 701 701 HOH HOH B . F 3 HOH 50 702 702 HOH HOH B . F 3 HOH 51 703 703 HOH HOH B . F 3 HOH 52 707 707 HOH HOH B . F 3 HOH 53 710 710 HOH HOH B . F 3 HOH 54 712 712 HOH HOH B . F 3 HOH 55 713 713 HOH HOH B . F 3 HOH 56 715 715 HOH HOH B . F 3 HOH 57 716 716 HOH HOH B . F 3 HOH 58 719 719 HOH HOH B . F 3 HOH 59 721 721 HOH HOH B . F 3 HOH 60 722 722 HOH HOH B . F 3 HOH 61 727 727 HOH HOH B . F 3 HOH 62 728 728 HOH HOH B . F 3 HOH 63 729 729 HOH HOH B . F 3 HOH 64 732 732 HOH HOH B . F 3 HOH 65 734 734 HOH HOH B . F 3 HOH 66 735 735 HOH HOH B . F 3 HOH 67 737 737 HOH HOH B . F 3 HOH 68 742 742 HOH HOH B . F 3 HOH 69 744 744 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 PHASER phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 25 ? ? -128.33 -165.34 2 1 GLU B 78 ? ? -27.49 -71.44 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 27 ? A ALA 27 2 1 Y 1 A VAL 28 ? A VAL 28 3 1 Y 1 A VAL 29 ? A VAL 29 4 1 Y 1 A ALA 30 ? A ALA 30 5 1 Y 1 A ASP 31 ? A ASP 31 6 1 Y 1 A VAL 32 ? A VAL 32 7 1 Y 1 A PRO 33 ? A PRO 33 8 1 Y 1 A GLY 34 ? A GLY 34 9 1 Y 1 A VAL 35 ? A VAL 35 10 1 Y 1 A THR 36 ? A THR 36 11 1 Y 1 A ARG 37 ? A ARG 37 12 1 Y 1 B ALA 27 ? B ALA 27 13 1 Y 1 B VAL 28 ? B VAL 28 14 1 Y 1 B VAL 29 ? B VAL 29 15 1 Y 1 B ALA 30 ? B ALA 30 16 1 Y 1 B ASP 31 ? B ASP 31 17 1 Y 1 B VAL 32 ? B VAL 32 18 1 Y 1 B PRO 33 ? B PRO 33 19 1 Y 1 B GLY 34 ? B GLY 34 20 1 Y 1 B VAL 35 ? B VAL 35 21 1 Y 1 B THR 36 ? B THR 36 22 1 Y 1 B ARG 37 ? B ARG 37 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GDP PB P N N 74 GDP O1B O N N 75 GDP O2B O N N 76 GDP O3B O N N 77 GDP O3A O N N 78 GDP PA P N N 79 GDP O1A O N N 80 GDP O2A O N N 81 GDP "O5'" O N N 82 GDP "C5'" C N N 83 GDP "C4'" C N R 84 GDP "O4'" O N N 85 GDP "C3'" C N S 86 GDP "O3'" O N N 87 GDP "C2'" C N R 88 GDP "O2'" O N N 89 GDP "C1'" C N R 90 GDP N9 N Y N 91 GDP C8 C Y N 92 GDP N7 N Y N 93 GDP C5 C Y N 94 GDP C6 C N N 95 GDP O6 O N N 96 GDP N1 N N N 97 GDP C2 C N N 98 GDP N2 N N N 99 GDP N3 N N N 100 GDP C4 C Y N 101 GDP HOB2 H N N 102 GDP HOB3 H N N 103 GDP HOA2 H N N 104 GDP "H5'" H N N 105 GDP "H5''" H N N 106 GDP "H4'" H N N 107 GDP "H3'" H N N 108 GDP "HO3'" H N N 109 GDP "H2'" H N N 110 GDP "HO2'" H N N 111 GDP "H1'" H N N 112 GDP H8 H N N 113 GDP HN1 H N N 114 GDP HN21 H N N 115 GDP HN22 H N N 116 GLN N N N N 117 GLN CA C N S 118 GLN C C N N 119 GLN O O N N 120 GLN CB C N N 121 GLN CG C N N 122 GLN CD C N N 123 GLN OE1 O N N 124 GLN NE2 N N N 125 GLN OXT O N N 126 GLN H H N N 127 GLN H2 H N N 128 GLN HA H N N 129 GLN HB2 H N N 130 GLN HB3 H N N 131 GLN HG2 H N N 132 GLN HG3 H N N 133 GLN HE21 H N N 134 GLN HE22 H N N 135 GLN HXT H N N 136 GLU N N N N 137 GLU CA C N S 138 GLU C C N N 139 GLU O O N N 140 GLU CB C N N 141 GLU CG C N N 142 GLU CD C N N 143 GLU OE1 O N N 144 GLU OE2 O N N 145 GLU OXT O N N 146 GLU H H N N 147 GLU H2 H N N 148 GLU HA H N N 149 GLU HB2 H N N 150 GLU HB3 H N N 151 GLU HG2 H N N 152 GLU HG3 H N N 153 GLU HE2 H N N 154 GLU HXT H N N 155 GLY N N N N 156 GLY CA C N N 157 GLY C C N N 158 GLY O O N N 159 GLY OXT O N N 160 GLY H H N N 161 GLY H2 H N N 162 GLY HA2 H N N 163 GLY HA3 H N N 164 GLY HXT H N N 165 HIS N N N N 166 HIS CA C N S 167 HIS C C N N 168 HIS O O N N 169 HIS CB C N N 170 HIS CG C Y N 171 HIS ND1 N Y N 172 HIS CD2 C Y N 173 HIS CE1 C Y N 174 HIS NE2 N Y N 175 HIS OXT O N N 176 HIS H H N N 177 HIS H2 H N N 178 HIS HA H N N 179 HIS HB2 H N N 180 HIS HB3 H N N 181 HIS HD1 H N N 182 HIS HD2 H N N 183 HIS HE1 H N N 184 HIS HE2 H N N 185 HIS HXT H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 ILE N N N N 190 ILE CA C N S 191 ILE C C N N 192 ILE O O N N 193 ILE CB C N S 194 ILE CG1 C N N 195 ILE CG2 C N N 196 ILE CD1 C N N 197 ILE OXT O N N 198 ILE H H N N 199 ILE H2 H N N 200 ILE HA H N N 201 ILE HB H N N 202 ILE HG12 H N N 203 ILE HG13 H N N 204 ILE HG21 H N N 205 ILE HG22 H N N 206 ILE HG23 H N N 207 ILE HD11 H N N 208 ILE HD12 H N N 209 ILE HD13 H N N 210 ILE HXT H N N 211 LEU N N N N 212 LEU CA C N S 213 LEU C C N N 214 LEU O O N N 215 LEU CB C N N 216 LEU CG C N N 217 LEU CD1 C N N 218 LEU CD2 C N N 219 LEU OXT O N N 220 LEU H H N N 221 LEU H2 H N N 222 LEU HA H N N 223 LEU HB2 H N N 224 LEU HB3 H N N 225 LEU HG H N N 226 LEU HD11 H N N 227 LEU HD12 H N N 228 LEU HD13 H N N 229 LEU HD21 H N N 230 LEU HD22 H N N 231 LEU HD23 H N N 232 LEU HXT H N N 233 LYS N N N N 234 LYS CA C N S 235 LYS C C N N 236 LYS O O N N 237 LYS CB C N N 238 LYS CG C N N 239 LYS CD C N N 240 LYS CE C N N 241 LYS NZ N N N 242 LYS OXT O N N 243 LYS H H N N 244 LYS H2 H N N 245 LYS HA H N N 246 LYS HB2 H N N 247 LYS HB3 H N N 248 LYS HG2 H N N 249 LYS HG3 H N N 250 LYS HD2 H N N 251 LYS HD3 H N N 252 LYS HE2 H N N 253 LYS HE3 H N N 254 LYS HZ1 H N N 255 LYS HZ2 H N N 256 LYS HZ3 H N N 257 LYS HXT H N N 258 MET N N N N 259 MET CA C N S 260 MET C C N N 261 MET O O N N 262 MET CB C N N 263 MET CG C N N 264 MET SD S N N 265 MET CE C N N 266 MET OXT O N N 267 MET H H N N 268 MET H2 H N N 269 MET HA H N N 270 MET HB2 H N N 271 MET HB3 H N N 272 MET HG2 H N N 273 MET HG3 H N N 274 MET HE1 H N N 275 MET HE2 H N N 276 MET HE3 H N N 277 MET HXT H N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GDP PB O1B doub N N 70 GDP PB O2B sing N N 71 GDP PB O3B sing N N 72 GDP PB O3A sing N N 73 GDP O2B HOB2 sing N N 74 GDP O3B HOB3 sing N N 75 GDP O3A PA sing N N 76 GDP PA O1A doub N N 77 GDP PA O2A sing N N 78 GDP PA "O5'" sing N N 79 GDP O2A HOA2 sing N N 80 GDP "O5'" "C5'" sing N N 81 GDP "C5'" "C4'" sing N N 82 GDP "C5'" "H5'" sing N N 83 GDP "C5'" "H5''" sing N N 84 GDP "C4'" "O4'" sing N N 85 GDP "C4'" "C3'" sing N N 86 GDP "C4'" "H4'" sing N N 87 GDP "O4'" "C1'" sing N N 88 GDP "C3'" "O3'" sing N N 89 GDP "C3'" "C2'" sing N N 90 GDP "C3'" "H3'" sing N N 91 GDP "O3'" "HO3'" sing N N 92 GDP "C2'" "O2'" sing N N 93 GDP "C2'" "C1'" sing N N 94 GDP "C2'" "H2'" sing N N 95 GDP "O2'" "HO2'" sing N N 96 GDP "C1'" N9 sing N N 97 GDP "C1'" "H1'" sing N N 98 GDP N9 C8 sing Y N 99 GDP N9 C4 sing Y N 100 GDP C8 N7 doub Y N 101 GDP C8 H8 sing N N 102 GDP N7 C5 sing Y N 103 GDP C5 C6 sing N N 104 GDP C5 C4 doub Y N 105 GDP C6 O6 doub N N 106 GDP C6 N1 sing N N 107 GDP N1 C2 sing N N 108 GDP N1 HN1 sing N N 109 GDP C2 N2 sing N N 110 GDP C2 N3 doub N N 111 GDP N2 HN21 sing N N 112 GDP N2 HN22 sing N N 113 GDP N3 C4 sing N N 114 GLN N CA sing N N 115 GLN N H sing N N 116 GLN N H2 sing N N 117 GLN CA C sing N N 118 GLN CA CB sing N N 119 GLN CA HA sing N N 120 GLN C O doub N N 121 GLN C OXT sing N N 122 GLN CB CG sing N N 123 GLN CB HB2 sing N N 124 GLN CB HB3 sing N N 125 GLN CG CD sing N N 126 GLN CG HG2 sing N N 127 GLN CG HG3 sing N N 128 GLN CD OE1 doub N N 129 GLN CD NE2 sing N N 130 GLN NE2 HE21 sing N N 131 GLN NE2 HE22 sing N N 132 GLN OXT HXT sing N N 133 GLU N CA sing N N 134 GLU N H sing N N 135 GLU N H2 sing N N 136 GLU CA C sing N N 137 GLU CA CB sing N N 138 GLU CA HA sing N N 139 GLU C O doub N N 140 GLU C OXT sing N N 141 GLU CB CG sing N N 142 GLU CB HB2 sing N N 143 GLU CB HB3 sing N N 144 GLU CG CD sing N N 145 GLU CG HG2 sing N N 146 GLU CG HG3 sing N N 147 GLU CD OE1 doub N N 148 GLU CD OE2 sing N N 149 GLU OE2 HE2 sing N N 150 GLU OXT HXT sing N N 151 GLY N CA sing N N 152 GLY N H sing N N 153 GLY N H2 sing N N 154 GLY CA C sing N N 155 GLY CA HA2 sing N N 156 GLY CA HA3 sing N N 157 GLY C O doub N N 158 GLY C OXT sing N N 159 GLY OXT HXT sing N N 160 HIS N CA sing N N 161 HIS N H sing N N 162 HIS N H2 sing N N 163 HIS CA C sing N N 164 HIS CA CB sing N N 165 HIS CA HA sing N N 166 HIS C O doub N N 167 HIS C OXT sing N N 168 HIS CB CG sing N N 169 HIS CB HB2 sing N N 170 HIS CB HB3 sing N N 171 HIS CG ND1 sing Y N 172 HIS CG CD2 doub Y N 173 HIS ND1 CE1 doub Y N 174 HIS ND1 HD1 sing N N 175 HIS CD2 NE2 sing Y N 176 HIS CD2 HD2 sing N N 177 HIS CE1 NE2 sing Y N 178 HIS CE1 HE1 sing N N 179 HIS NE2 HE2 sing N N 180 HIS OXT HXT sing N N 181 HOH O H1 sing N N 182 HOH O H2 sing N N 183 ILE N CA sing N N 184 ILE N H sing N N 185 ILE N H2 sing N N 186 ILE CA C sing N N 187 ILE CA CB sing N N 188 ILE CA HA sing N N 189 ILE C O doub N N 190 ILE C OXT sing N N 191 ILE CB CG1 sing N N 192 ILE CB CG2 sing N N 193 ILE CB HB sing N N 194 ILE CG1 CD1 sing N N 195 ILE CG1 HG12 sing N N 196 ILE CG1 HG13 sing N N 197 ILE CG2 HG21 sing N N 198 ILE CG2 HG22 sing N N 199 ILE CG2 HG23 sing N N 200 ILE CD1 HD11 sing N N 201 ILE CD1 HD12 sing N N 202 ILE CD1 HD13 sing N N 203 ILE OXT HXT sing N N 204 LEU N CA sing N N 205 LEU N H sing N N 206 LEU N H2 sing N N 207 LEU CA C sing N N 208 LEU CA CB sing N N 209 LEU CA HA sing N N 210 LEU C O doub N N 211 LEU C OXT sing N N 212 LEU CB CG sing N N 213 LEU CB HB2 sing N N 214 LEU CB HB3 sing N N 215 LEU CG CD1 sing N N 216 LEU CG CD2 sing N N 217 LEU CG HG sing N N 218 LEU CD1 HD11 sing N N 219 LEU CD1 HD12 sing N N 220 LEU CD1 HD13 sing N N 221 LEU CD2 HD21 sing N N 222 LEU CD2 HD22 sing N N 223 LEU CD2 HD23 sing N N 224 LEU OXT HXT sing N N 225 LYS N CA sing N N 226 LYS N H sing N N 227 LYS N H2 sing N N 228 LYS CA C sing N N 229 LYS CA CB sing N N 230 LYS CA HA sing N N 231 LYS C O doub N N 232 LYS C OXT sing N N 233 LYS CB CG sing N N 234 LYS CB HB2 sing N N 235 LYS CB HB3 sing N N 236 LYS CG CD sing N N 237 LYS CG HG2 sing N N 238 LYS CG HG3 sing N N 239 LYS CD CE sing N N 240 LYS CD HD2 sing N N 241 LYS CD HD3 sing N N 242 LYS CE NZ sing N N 243 LYS CE HE2 sing N N 244 LYS CE HE3 sing N N 245 LYS NZ HZ1 sing N N 246 LYS NZ HZ2 sing N N 247 LYS NZ HZ3 sing N N 248 LYS OXT HXT sing N N 249 MET N CA sing N N 250 MET N H sing N N 251 MET N H2 sing N N 252 MET CA C sing N N 253 MET CA CB sing N N 254 MET CA HA sing N N 255 MET C O doub N N 256 MET C OXT sing N N 257 MET CB CG sing N N 258 MET CB HB2 sing N N 259 MET CB HB3 sing N N 260 MET CG SD sing N N 261 MET CG HG2 sing N N 262 MET CG HG3 sing N N 263 MET SD CE sing N N 264 MET CE HE1 sing N N 265 MET CE HE2 sing N N 266 MET CE HE3 sing N N 267 MET OXT HXT sing N N 268 PHE N CA sing N N 269 PHE N H sing N N 270 PHE N H2 sing N N 271 PHE CA C sing N N 272 PHE CA CB sing N N 273 PHE CA HA sing N N 274 PHE C O doub N N 275 PHE C OXT sing N N 276 PHE CB CG sing N N 277 PHE CB HB2 sing N N 278 PHE CB HB3 sing N N 279 PHE CG CD1 doub Y N 280 PHE CG CD2 sing Y N 281 PHE CD1 CE1 sing Y N 282 PHE CD1 HD1 sing N N 283 PHE CD2 CE2 doub Y N 284 PHE CD2 HD2 sing N N 285 PHE CE1 CZ doub Y N 286 PHE CE1 HE1 sing N N 287 PHE CE2 CZ sing Y N 288 PHE CE2 HE2 sing N N 289 PHE CZ HZ sing N N 290 PHE OXT HXT sing N N 291 PRO N CA sing N N 292 PRO N CD sing N N 293 PRO N H sing N N 294 PRO CA C sing N N 295 PRO CA CB sing N N 296 PRO CA HA sing N N 297 PRO C O doub N N 298 PRO C OXT sing N N 299 PRO CB CG sing N N 300 PRO CB HB2 sing N N 301 PRO CB HB3 sing N N 302 PRO CG CD sing N N 303 PRO CG HG2 sing N N 304 PRO CG HG3 sing N N 305 PRO CD HD2 sing N N 306 PRO CD HD3 sing N N 307 PRO OXT HXT sing N N 308 SER N CA sing N N 309 SER N H sing N N 310 SER N H2 sing N N 311 SER CA C sing N N 312 SER CA CB sing N N 313 SER CA HA sing N N 314 SER C O doub N N 315 SER C OXT sing N N 316 SER CB OG sing N N 317 SER CB HB2 sing N N 318 SER CB HB3 sing N N 319 SER OG HG sing N N 320 SER OXT HXT sing N N 321 THR N CA sing N N 322 THR N H sing N N 323 THR N H2 sing N N 324 THR CA C sing N N 325 THR CA CB sing N N 326 THR CA HA sing N N 327 THR C O doub N N 328 THR C OXT sing N N 329 THR CB OG1 sing N N 330 THR CB CG2 sing N N 331 THR CB HB sing N N 332 THR OG1 HG1 sing N N 333 THR CG2 HG21 sing N N 334 THR CG2 HG22 sing N N 335 THR CG2 HG23 sing N N 336 THR OXT HXT sing N N 337 TRP N CA sing N N 338 TRP N H sing N N 339 TRP N H2 sing N N 340 TRP CA C sing N N 341 TRP CA CB sing N N 342 TRP CA HA sing N N 343 TRP C O doub N N 344 TRP C OXT sing N N 345 TRP CB CG sing N N 346 TRP CB HB2 sing N N 347 TRP CB HB3 sing N N 348 TRP CG CD1 doub Y N 349 TRP CG CD2 sing Y N 350 TRP CD1 NE1 sing Y N 351 TRP CD1 HD1 sing N N 352 TRP CD2 CE2 doub Y N 353 TRP CD2 CE3 sing Y N 354 TRP NE1 CE2 sing Y N 355 TRP NE1 HE1 sing N N 356 TRP CE2 CZ2 sing Y N 357 TRP CE3 CZ3 doub Y N 358 TRP CE3 HE3 sing N N 359 TRP CZ2 CH2 doub Y N 360 TRP CZ2 HZ2 sing N N 361 TRP CZ3 CH2 sing Y N 362 TRP CZ3 HZ3 sing N N 363 TRP CH2 HH2 sing N N 364 TRP OXT HXT sing N N 365 TYR N CA sing N N 366 TYR N H sing N N 367 TYR N H2 sing N N 368 TYR CA C sing N N 369 TYR CA CB sing N N 370 TYR CA HA sing N N 371 TYR C O doub N N 372 TYR C OXT sing N N 373 TYR CB CG sing N N 374 TYR CB HB2 sing N N 375 TYR CB HB3 sing N N 376 TYR CG CD1 doub Y N 377 TYR CG CD2 sing Y N 378 TYR CD1 CE1 sing Y N 379 TYR CD1 HD1 sing N N 380 TYR CD2 CE2 doub Y N 381 TYR CD2 HD2 sing N N 382 TYR CE1 CZ doub Y N 383 TYR CE1 HE1 sing N N 384 TYR CE2 CZ sing Y N 385 TYR CE2 HE2 sing N N 386 TYR CZ OH sing N N 387 TYR OH HH sing N N 388 TYR OXT HXT sing N N 389 VAL N CA sing N N 390 VAL N H sing N N 391 VAL N H2 sing N N 392 VAL CA C sing N N 393 VAL CA CB sing N N 394 VAL CA HA sing N N 395 VAL C O doub N N 396 VAL C OXT sing N N 397 VAL CB CG1 sing N N 398 VAL CB CG2 sing N N 399 VAL CB HB sing N N 400 VAL CG1 HG11 sing N N 401 VAL CG1 HG12 sing N N 402 VAL CG1 HG13 sing N N 403 VAL CG2 HG21 sing N N 404 VAL CG2 HG22 sing N N 405 VAL CG2 HG23 sing N N 406 VAL OXT HXT sing N N 407 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MKY _pdbx_initial_refinement_model.details 'PDB ENTRY 1MKY' #