HEADER PROTEIN TURNOVER/PROTEIN TURNOVER 15-SEP-06 2DYO TITLE THE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ATG5- ATG16(1-57) TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AUTOPHAGY PROTEIN 16; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 1-57; COMPND 9 SYNONYM: CYTOPLASM TO VACUOLE TARGETING PROTEIN 11, SAP18 HOMOLOG; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: ATG5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: ATG16; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS UBIQUITIN-FOLD, HERIX-BUNDLE, PROTEIN TURNOVER-PROTEIN TURNOVER KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.MATSUSHITA,N.N.SUZUKI,F.INAGAKI REVDAT 4 13-MAR-24 2DYO 1 SEQADV REVDAT 3 24-FEB-09 2DYO 1 VERSN REVDAT 2 03-JUL-07 2DYO 1 JRNL REMARK REVDAT 1 26-DEC-06 2DYO 0 JRNL AUTH M.MATSUSHITA,N.N.SUZUKI,K.OBARA,Y.FUJIOKA,Y.OHSUMI,F.INAGAKI JRNL TITL STRUCTURE OF ATG5.ATG16, A COMPLEX ESSENTIAL FOR AUTOPHAGY JRNL REF J.BIOL.CHEM. V. 282 6763 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17192262 JRNL DOI 10.1074/JBC.M609876200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.MATSUSHITA,N.N.SUZUKI,Y.FUJIOKA,Y.OHSUMI,F.INAGAKI REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF THE REMARK 1 TITL 2 ATG5-ATG16 COMPLEX ESSENTIAL FOR AUTOPHAGY REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 1021 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17012802 REMARK 1 DOI 10.1107/S1744309106036232 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 324199.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 28960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2879 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4190 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 473 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.19000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -2.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.600 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.620 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.110 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 47.27 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000026006. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR, MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1M HEPES, PH 6.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.62650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.62650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.03750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.62650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.62650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.03750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.62650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.62650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.03750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.62650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.62650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.03750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERO-DIMER CONSISTING OF REMARK 300 CHAIN A AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 148.07500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 84 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 LEU A 65 REMARK 465 THR A 66 REMARK 465 ASP A 67 REMARK 465 SER A 68 REMARK 465 THR A 100 REMARK 465 PHE A 101 REMARK 465 THR A 102 REMARK 465 THR A 103 REMARK 465 SER A 104 REMARK 465 PHE A 105 REMARK 465 GLU A 106 REMARK 465 ASN A 107 REMARK 465 GLN A 108 REMARK 465 ILE A 243 REMARK 465 ASN A 244 REMARK 465 GLY A 245 REMARK 465 ASN A 246 REMARK 465 GLY A 286 REMARK 465 GLY A 287 REMARK 465 ASP A 288 REMARK 465 LYS A 289 REMARK 465 ALA A 290 REMARK 465 SER A 291 REMARK 465 SER A 292 REMARK 465 GLU A 293 REMARK 465 LEU A 294 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 PHE B 4 REMARK 465 ILE B 5 REMARK 465 ILE B 6 REMARK 465 THR B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 11 REMARK 465 ALA B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 ARG B 16 REMARK 465 SER B 17 REMARK 465 ASN B 18 REMARK 465 PRO B 19 REMARK 465 GLN B 20 REMARK 465 THR B 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 VAL A 112 CG1 CG2 REMARK 470 THR A 209 OG1 CG2 REMARK 470 SER A 210 OG REMARK 470 THR A 212 OG1 CG2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 ASP B 22 CG OD1 OD2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 ILE B 57 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 233 O HOH A 449 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 27.53 -79.53 REMARK 500 SER A 98 -11.05 -49.14 REMARK 500 THR A 129 -4.82 73.92 REMARK 500 LYS A 137 5.32 -67.78 REMARK 500 ARG A 180 37.06 70.63 REMARK 500 SER A 193 123.39 -171.46 REMARK 500 THR A 206 -145.60 -108.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DYM RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE DIFFERENT LENGTH DBREF 2DYO A 1 294 UNP Q12380 ATG5_YEAST 1 294 DBREF 2DYO B 1 57 UNP Q03818 ATG16_YEAST 1 57 SEQADV 2DYO GLY A -2 UNP Q12380 CLONING ARTIFACT SEQADV 2DYO ALA A -1 UNP Q12380 CLONING ARTIFACT SEQADV 2DYO HIS A 0 UNP Q12380 CLONING ARTIFACT SEQRES 1 A 297 GLY ALA HIS MET ASN ASP ILE LYS GLN LEU LEU TRP ASN SEQRES 2 A 297 GLY GLU LEU ASN VAL LEU VAL SER ILE ASP PRO SER PHE SEQRES 3 A 297 LEU MET LYS GLY SER PRO ARG GLU ILE ALA VAL LEU ARG SEQRES 4 A 297 ILE ARG VAL PRO ARG GLU THR TYR LEU VAL ASN TYR MET SEQRES 5 A 297 PRO LEU ILE TRP ASN LYS ILE LYS SER PHE LEU SER PHE SEQRES 6 A 297 ASP PRO LEU THR ASP SER GLU LYS TYR PHE TRP PHE GLU SEQRES 7 A 297 HIS ASN LYS THR PRO ILE PRO TRP ASN TYR PRO VAL GLY SEQRES 8 A 297 VAL LEU PHE ASP CYS LEU ALA GLY LYS SER ALA THR PHE SEQRES 9 A 297 THR THR SER PHE GLU ASN GLN VAL LYS ASP VAL LEU THR SEQRES 10 A 297 PHE LEU ARG ILE HIS LEU VAL MET GLY ASP SER LEU PRO SEQRES 11 A 297 PRO THR ILE ILE PRO ILE ALA SER SER LYS THR GLN ALA SEQRES 12 A 297 GLU LYS PHE TRP PHE HIS GLN TRP LYS GLN VAL CYS PHE SEQRES 13 A 297 ILE LEU ASN GLY SER SER LYS ALA ILE MET SER LEU SER SEQRES 14 A 297 VAL ASN GLU ALA ARG LYS PHE TRP GLY SER VAL ILE THR SEQRES 15 A 297 ARG ASN PHE GLN ASP PHE ILE GLU ILE SER ASN LYS ILE SEQRES 16 A 297 SER SER SER ARG PRO ARG HIS ILE PRO LEU ILE ILE GLN SEQRES 17 A 297 THR SER ARG THR SER GLY THR PHE ARG ILE SER GLN PRO SEQRES 18 A 297 THR ILE SER MET THR GLY VAL ASN PRO THR LEU LYS ASP SEQRES 19 A 297 ILE GLU GLY ASP ILE LEU ASP VAL LYS GLU GLY ILE ASN SEQRES 20 A 297 GLY ASN ASP VAL MET VAL ILE CYS GLN GLY ILE GLU ILE SEQRES 21 A 297 PRO TRP HIS MET LEU LEU TYR ASP LEU TYR SER LYS LEU SEQRES 22 A 297 ARG SER PHE ASP GLY PHE LEU TYR ILE THR LEU VAL PRO SEQRES 23 A 297 ILE LYS GLY GLY ASP LYS ALA SER SER GLU LEU SEQRES 1 B 57 MET GLY ASN PHE ILE ILE THR GLU ARG LYS LYS ALA LYS SEQRES 2 B 57 GLU GLU ARG SER ASN PRO GLN THR ASP SER MET ASP ASP SEQRES 3 B 57 LEU LEU ILE ARG ARG LEU THR ASP ARG ASN ASP LYS GLU SEQRES 4 B 57 ALA HIS LEU ASN GLU LEU PHE GLN ASP ASN SER GLY ALA SEQRES 5 B 57 ILE GLY GLY ASN ILE FORMUL 3 HOH *244(H2 O) HELIX 1 1 HIS A 0 ASN A 10 1 11 HELIX 2 2 PRO A 21 LEU A 24 5 4 HELIX 3 3 PRO A 29 ILE A 32 5 4 HELIX 4 4 TYR A 44 ASN A 47 5 4 HELIX 5 5 TYR A 48 LYS A 57 1 10 HELIX 6 6 SER A 58 LEU A 60 5 3 HELIX 7 7 PRO A 86 GLY A 96 1 11 HELIX 8 8 LYS A 97 ALA A 99 5 3 HELIX 9 9 THR A 138 GLY A 157 1 20 HELIX 10 10 SER A 159 SER A 164 1 6 HELIX 11 11 SER A 166 ARG A 180 1 15 HELIX 12 12 ASN A 181 SER A 193 1 13 HELIX 13 13 LEU A 229 ASP A 231 5 3 HELIX 14 14 ILE A 232 LEU A 237 1 6 HELIX 15 15 LEU A 262 ARG A 271 1 10 HELIX 16 16 ASP B 22 HIS B 41 1 20 HELIX 17 17 LEU B 42 PHE B 46 5 5 SHEET 1 A 5 VAL A 34 PRO A 40 0 SHEET 2 A 5 GLU A 12 ILE A 19 -1 N LEU A 13 O VAL A 39 SHEET 3 A 5 PHE A 115 GLY A 123 1 O ILE A 118 N SER A 18 SHEET 4 A 5 TYR A 71 HIS A 76 -1 N TYR A 71 O GLY A 123 SHEET 5 A 5 THR A 79 ILE A 81 -1 O ILE A 81 N PHE A 74 SHEET 1 B 5 ILE A 215 SER A 216 0 SHEET 2 B 5 LEU A 202 GLN A 205 -1 N ILE A 204 O SER A 216 SHEET 3 B 5 LEU A 277 PRO A 283 1 O LEU A 281 N GLN A 205 SHEET 4 B 5 VAL A 248 CYS A 252 -1 N ILE A 251 O THR A 280 SHEET 5 B 5 ILE A 255 ILE A 257 -1 O ILE A 257 N VAL A 250 CRYST1 73.253 73.253 148.075 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013651 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006753 0.00000