data_2DYQ # _entry.id 2DYQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2DYQ RCSB RCSB026008 WWPDB D_1000026008 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002009772.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DYQ _pdbx_database_status.recvd_initial_deposition_date 2006-09-16 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nishino, A.' 1 'Saijo, S.' 2 'Kishishita, S.' 3 'Shirouzu, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Saijo, S.' 1 primary 'Nishino, A.' 2 primary 'Kishishita, S.' 3 primary 'Shirouzu, M.' 4 primary 'Yokoyama, S.' 5 # _cell.entry_id 2DYQ _cell.length_a 82.292 _cell.length_b 82.292 _cell.length_c 104.871 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DYQ _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Amyloid beta A4 precursor protein-binding family B member 3' _entity.formula_weight 15584.754 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'C-terminal Phosphotyrosine interaction domain (PTB/PID)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Fe65-like protein 2, Fe65L2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGLDAVSQAAQKYEALY(MSE)GTLPVTKA(MSE)G(MSE)DVLNEAIGTLTARGDRNAWVPT(MSE)LSVSDSL (MSE)TAHPIQAEASTEEEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAAC(MSE)V QYQKCLVA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGLDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEP LWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002009772.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 ASP n 1 10 ALA n 1 11 VAL n 1 12 SER n 1 13 GLN n 1 14 ALA n 1 15 ALA n 1 16 GLN n 1 17 LYS n 1 18 TYR n 1 19 GLU n 1 20 ALA n 1 21 LEU n 1 22 TYR n 1 23 MSE n 1 24 GLY n 1 25 THR n 1 26 LEU n 1 27 PRO n 1 28 VAL n 1 29 THR n 1 30 LYS n 1 31 ALA n 1 32 MSE n 1 33 GLY n 1 34 MSE n 1 35 ASP n 1 36 VAL n 1 37 LEU n 1 38 ASN n 1 39 GLU n 1 40 ALA n 1 41 ILE n 1 42 GLY n 1 43 THR n 1 44 LEU n 1 45 THR n 1 46 ALA n 1 47 ARG n 1 48 GLY n 1 49 ASP n 1 50 ARG n 1 51 ASN n 1 52 ALA n 1 53 TRP n 1 54 VAL n 1 55 PRO n 1 56 THR n 1 57 MSE n 1 58 LEU n 1 59 SER n 1 60 VAL n 1 61 SER n 1 62 ASP n 1 63 SER n 1 64 LEU n 1 65 MSE n 1 66 THR n 1 67 ALA n 1 68 HIS n 1 69 PRO n 1 70 ILE n 1 71 GLN n 1 72 ALA n 1 73 GLU n 1 74 ALA n 1 75 SER n 1 76 THR n 1 77 GLU n 1 78 GLU n 1 79 GLU n 1 80 PRO n 1 81 LEU n 1 82 TRP n 1 83 GLN n 1 84 CYS n 1 85 PRO n 1 86 VAL n 1 87 ARG n 1 88 LEU n 1 89 VAL n 1 90 THR n 1 91 PHE n 1 92 ILE n 1 93 GLY n 1 94 VAL n 1 95 GLY n 1 96 ARG n 1 97 ASP n 1 98 PRO n 1 99 HIS n 1 100 THR n 1 101 PHE n 1 102 GLY n 1 103 LEU n 1 104 ILE n 1 105 ALA n 1 106 ASP n 1 107 LEU n 1 108 GLY n 1 109 ARG n 1 110 GLN n 1 111 SER n 1 112 PHE n 1 113 GLN n 1 114 CYS n 1 115 ALA n 1 116 ALA n 1 117 PHE n 1 118 TRP n 1 119 CYS n 1 120 GLN n 1 121 PRO n 1 122 HIS n 1 123 ALA n 1 124 GLY n 1 125 GLY n 1 126 LEU n 1 127 SER n 1 128 GLU n 1 129 ALA n 1 130 VAL n 1 131 GLN n 1 132 ALA n 1 133 ALA n 1 134 CYS n 1 135 MSE n 1 136 VAL n 1 137 GLN n 1 138 TYR n 1 139 GLN n 1 140 LYS n 1 141 CYS n 1 142 LEU n 1 143 VAL n 1 144 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'APBB3, FE65L2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PK060110-10 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code APBB3_HUMAN _struct_ref.pdbx_db_accession O95704 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEEEPLWQCPVR LVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVA ; _struct_ref.pdbx_align_begin 281 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DYQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O95704 _struct_ref_seq.db_align_beg 281 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 417 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 281 _struct_ref_seq.pdbx_auth_seq_align_end 417 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DYQ GLY A 1 ? UNP O95704 ? ? 'EXPRESSION TAG' 274 1 1 2DYQ SER A 2 ? UNP O95704 ? ? 'EXPRESSION TAG' 275 2 1 2DYQ SER A 3 ? UNP O95704 ? ? 'EXPRESSION TAG' 276 3 1 2DYQ GLY A 4 ? UNP O95704 ? ? 'EXPRESSION TAG' 277 4 1 2DYQ SER A 5 ? UNP O95704 ? ? 'EXPRESSION TAG' 278 5 1 2DYQ SER A 6 ? UNP O95704 ? ? 'EXPRESSION TAG' 279 6 1 2DYQ GLY A 7 ? UNP O95704 ? ? 'EXPRESSION TAG' 280 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2DYQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.29 _exptl_crystal.density_percent_sol 62.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.pdbx_details '25% PEG 3350, 0.2M Ammonium Acetate, 0.1M Tris-HCl, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2006-04-19 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97895 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97895 # _reflns.entry_id 2DYQ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 3.10 _reflns.d_resolution_low 71.25 _reflns.number_all ? _reflns.number_obs 4171 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.08 _reflns.pdbx_netI_over_sigmaI 51.3 _reflns.B_iso_Wilson_estimate 45.2 _reflns.pdbx_redundancy 18.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low 3.15 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.407 _reflns_shell.meanI_over_sigI_obs 8.6 _reflns_shell.pdbx_redundancy 20.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 202 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2DYQ _refine.ls_number_reflns_obs 3946 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 3.10 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.256 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.254 _refine.ls_R_factor_R_free 0.298 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 190 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.901 _refine.correlation_coeff_Fo_to_Fc_free 0.852 _refine.B_iso_mean 46.3 _refine.aniso_B[1][1] -0.37 _refine.aniso_B[2][2] -0.37 _refine.aniso_B[3][3] 0.56 _refine.aniso_B[1][2] -0.19 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.370 _refine.pdbx_overall_ESU_R_Free 0.452 _refine.overall_SU_ML 0.387 _refine.overall_SU_B 50.292 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 909 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 909 _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 930 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.593 1.945 ? 1272 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 2.525 5.000 ? 122 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26.623 25.000 ? 34 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.280 15.000 ? 132 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9.341 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.109 0.200 ? 148 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 706 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.224 0.200 ? 433 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.306 0.200 ? 661 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.140 0.200 ? 21 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.212 0.200 ? 41 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.376 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.565 1.500 ? 629 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.896 2.000 ? 979 'X-RAY DIFFRACTION' ? r_scbond_it 1.370 3.000 ? 349 'X-RAY DIFFRACTION' ? r_scangle_it 2.137 4.500 ? 293 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.105 _refine_ls_shell.d_res_low 3.185 _refine_ls_shell.number_reflns_R_work 281 _refine_ls_shell.R_factor_R_work 0.289 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.194 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 7 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 281 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2DYQ _struct.title 'Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3' _struct.pdbx_descriptor 'Amyloid beta A4 precursor protein-binding family B member 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DYQ _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;Protein binding, Phosphotyrosine-interaction domain (PTB/PID), Alzheimer's disease, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 33 ? ALA A 46 ? GLY A 306 ALA A 319 1 ? 14 HELX_P HELX_P2 2 ALA A 123 ? VAL A 143 ? ALA A 396 VAL A 416 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A TYR 22 C ? ? ? 1_555 A MSE 23 N ? ? A TYR 295 A MSE 296 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A MSE 23 C ? ? ? 1_555 A GLY 24 N ? ? A MSE 296 A GLY 297 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A ALA 31 C ? ? ? 1_555 A MSE 32 N ? ? A ALA 304 A MSE 305 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 32 C ? ? ? 1_555 A GLY 33 N ? ? A MSE 305 A GLY 306 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? A GLY 33 C ? ? ? 1_555 A MSE 34 N ? ? A GLY 306 A MSE 307 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale ? ? A MSE 34 C ? ? ? 1_555 A ASP 35 N ? ? A MSE 307 A ASP 308 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A THR 56 C ? ? ? 1_555 A MSE 57 N ? ? A THR 329 A MSE 330 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A MSE 57 C ? ? ? 1_555 A LEU 58 N ? ? A MSE 330 A LEU 331 1_555 ? ? ? ? ? ? ? 1.333 ? covale9 covale ? ? A LEU 64 C ? ? ? 1_555 A MSE 65 N ? ? A LEU 337 A MSE 338 1_555 ? ? ? ? ? ? ? 1.332 ? covale10 covale ? ? A MSE 65 C ? ? ? 1_555 A THR 66 N ? ? A MSE 338 A THR 339 1_555 ? ? ? ? ? ? ? 1.326 ? covale11 covale ? ? A CYS 134 C ? ? ? 1_555 A MSE 135 N ? ? A CYS 407 A MSE 408 1_555 ? ? ? ? ? ? ? 1.334 ? covale12 covale ? ? A MSE 135 C ? ? ? 1_555 A VAL 136 N ? ? A MSE 408 A VAL 409 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 83 ? PRO A 85 ? GLN A 356 PRO A 358 A 2 LEU A 64 ? PRO A 69 ? LEU A 337 PRO A 342 A 3 VAL A 54 ? VAL A 60 ? VAL A 327 VAL A 333 A 4 GLU A 19 ? VAL A 28 ? GLU A 292 VAL A 301 A 5 PHE A 112 ? TRP A 118 ? PHE A 385 TRP A 391 A 6 THR A 100 ? ASP A 106 ? THR A 373 ASP A 379 A 7 VAL A 89 ? VAL A 94 ? VAL A 362 VAL A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O CYS A 84 ? O CYS A 357 N MSE A 65 ? N MSE A 338 A 2 3 O THR A 66 ? O THR A 339 N SER A 59 ? N SER A 332 A 3 4 O THR A 56 ? O THR A 329 N ALA A 20 ? N ALA A 293 A 4 5 N VAL A 28 ? N VAL A 301 O PHE A 112 ? O PHE A 385 A 5 6 O ALA A 115 ? O ALA A 388 N LEU A 103 ? N LEU A 376 A 6 7 O ILE A 104 ? O ILE A 377 N THR A 90 ? N THR A 363 # _database_PDB_matrix.entry_id 2DYQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DYQ _atom_sites.fract_transf_matrix[1][1] 0.012152 _atom_sites.fract_transf_matrix[1][2] 0.007016 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014032 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009536 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 274 ? ? ? A . n A 1 2 SER 2 275 ? ? ? A . n A 1 3 SER 3 276 ? ? ? A . n A 1 4 GLY 4 277 ? ? ? A . n A 1 5 SER 5 278 ? ? ? A . n A 1 6 SER 6 279 ? ? ? A . n A 1 7 GLY 7 280 ? ? ? A . n A 1 8 LEU 8 281 ? ? ? A . n A 1 9 ASP 9 282 ? ? ? A . n A 1 10 ALA 10 283 ? ? ? A . n A 1 11 VAL 11 284 ? ? ? A . n A 1 12 SER 12 285 ? ? ? A . n A 1 13 GLN 13 286 ? ? ? A . n A 1 14 ALA 14 287 ? ? ? A . n A 1 15 ALA 15 288 288 ALA ALA A . n A 1 16 GLN 16 289 289 GLN GLN A . n A 1 17 LYS 17 290 290 LYS LYS A . n A 1 18 TYR 18 291 291 TYR TYR A . n A 1 19 GLU 19 292 292 GLU GLU A . n A 1 20 ALA 20 293 293 ALA ALA A . n A 1 21 LEU 21 294 294 LEU LEU A . n A 1 22 TYR 22 295 295 TYR TYR A . n A 1 23 MSE 23 296 296 MSE MSE A . n A 1 24 GLY 24 297 297 GLY GLY A . n A 1 25 THR 25 298 298 THR THR A . n A 1 26 LEU 26 299 299 LEU LEU A . n A 1 27 PRO 27 300 300 PRO PRO A . n A 1 28 VAL 28 301 301 VAL VAL A . n A 1 29 THR 29 302 302 THR THR A . n A 1 30 LYS 30 303 303 LYS ALA A . n A 1 31 ALA 31 304 304 ALA ALA A . n A 1 32 MSE 32 305 305 MSE MSE A . n A 1 33 GLY 33 306 306 GLY GLY A . n A 1 34 MSE 34 307 307 MSE MSE A . n A 1 35 ASP 35 308 308 ASP ASP A . n A 1 36 VAL 36 309 309 VAL VAL A . n A 1 37 LEU 37 310 310 LEU LEU A . n A 1 38 ASN 38 311 311 ASN ASN A . n A 1 39 GLU 39 312 312 GLU GLU A . n A 1 40 ALA 40 313 313 ALA ALA A . n A 1 41 ILE 41 314 314 ILE ILE A . n A 1 42 GLY 42 315 315 GLY GLY A . n A 1 43 THR 43 316 316 THR THR A . n A 1 44 LEU 44 317 317 LEU LEU A . n A 1 45 THR 45 318 318 THR THR A . n A 1 46 ALA 46 319 319 ALA ALA A . n A 1 47 ARG 47 320 320 ARG ARG A . n A 1 48 GLY 48 321 321 GLY GLY A . n A 1 49 ASP 49 322 322 ASP ASP A . n A 1 50 ARG 50 323 323 ARG ALA A . n A 1 51 ASN 51 324 324 ASN ASN A . n A 1 52 ALA 52 325 325 ALA ALA A . n A 1 53 TRP 53 326 326 TRP TRP A . n A 1 54 VAL 54 327 327 VAL VAL A . n A 1 55 PRO 55 328 328 PRO PRO A . n A 1 56 THR 56 329 329 THR THR A . n A 1 57 MSE 57 330 330 MSE MSE A . n A 1 58 LEU 58 331 331 LEU LEU A . n A 1 59 SER 59 332 332 SER SER A . n A 1 60 VAL 60 333 333 VAL VAL A . n A 1 61 SER 61 334 334 SER SER A . n A 1 62 ASP 62 335 335 ASP ASP A . n A 1 63 SER 63 336 336 SER SER A . n A 1 64 LEU 64 337 337 LEU LEU A . n A 1 65 MSE 65 338 338 MSE MSE A . n A 1 66 THR 66 339 339 THR THR A . n A 1 67 ALA 67 340 340 ALA ALA A . n A 1 68 HIS 68 341 341 HIS HIS A . n A 1 69 PRO 69 342 342 PRO PRO A . n A 1 70 ILE 70 343 343 ILE ILE A . n A 1 71 GLN 71 344 344 GLN GLN A . n A 1 72 ALA 72 345 ? ? ? A . n A 1 73 GLU 73 346 ? ? ? A . n A 1 74 ALA 74 347 ? ? ? A . n A 1 75 SER 75 348 ? ? ? A . n A 1 76 THR 76 349 ? ? ? A . n A 1 77 GLU 77 350 ? ? ? A . n A 1 78 GLU 78 351 351 GLU ALA A . n A 1 79 GLU 79 352 352 GLU GLU A . n A 1 80 PRO 80 353 353 PRO PRO A . n A 1 81 LEU 81 354 354 LEU LEU A . n A 1 82 TRP 82 355 355 TRP TRP A . n A 1 83 GLN 83 356 356 GLN GLN A . n A 1 84 CYS 84 357 357 CYS CYS A . n A 1 85 PRO 85 358 358 PRO PRO A . n A 1 86 VAL 86 359 359 VAL VAL A . n A 1 87 ARG 87 360 360 ARG ARG A . n A 1 88 LEU 88 361 361 LEU LEU A . n A 1 89 VAL 89 362 362 VAL VAL A . n A 1 90 THR 90 363 363 THR THR A . n A 1 91 PHE 91 364 364 PHE PHE A . n A 1 92 ILE 92 365 365 ILE ILE A . n A 1 93 GLY 93 366 366 GLY GLY A . n A 1 94 VAL 94 367 367 VAL VAL A . n A 1 95 GLY 95 368 368 GLY GLY A . n A 1 96 ARG 96 369 369 ARG ALA A . n A 1 97 ASP 97 370 370 ASP ASP A . n A 1 98 PRO 98 371 371 PRO PRO A . n A 1 99 HIS 99 372 372 HIS HIS A . n A 1 100 THR 100 373 373 THR THR A . n A 1 101 PHE 101 374 374 PHE PHE A . n A 1 102 GLY 102 375 375 GLY GLY A . n A 1 103 LEU 103 376 376 LEU LEU A . n A 1 104 ILE 104 377 377 ILE ILE A . n A 1 105 ALA 105 378 378 ALA ALA A . n A 1 106 ASP 106 379 379 ASP ASP A . n A 1 107 LEU 107 380 380 LEU LEU A . n A 1 108 GLY 108 381 381 GLY GLY A . n A 1 109 ARG 109 382 382 ARG ALA A . n A 1 110 GLN 110 383 383 GLN ALA A . n A 1 111 SER 111 384 384 SER SER A . n A 1 112 PHE 112 385 385 PHE PHE A . n A 1 113 GLN 113 386 386 GLN GLN A . n A 1 114 CYS 114 387 387 CYS CYS A . n A 1 115 ALA 115 388 388 ALA ALA A . n A 1 116 ALA 116 389 389 ALA ALA A . n A 1 117 PHE 117 390 390 PHE PHE A . n A 1 118 TRP 118 391 391 TRP TRP A . n A 1 119 CYS 119 392 392 CYS CYS A . n A 1 120 GLN 120 393 393 GLN GLN A . n A 1 121 PRO 121 394 394 PRO PRO A . n A 1 122 HIS 122 395 395 HIS HIS A . n A 1 123 ALA 123 396 396 ALA ALA A . n A 1 124 GLY 124 397 397 GLY GLY A . n A 1 125 GLY 125 398 398 GLY GLY A . n A 1 126 LEU 126 399 399 LEU LEU A . n A 1 127 SER 127 400 400 SER SER A . n A 1 128 GLU 128 401 401 GLU GLU A . n A 1 129 ALA 129 402 402 ALA ALA A . n A 1 130 VAL 130 403 403 VAL VAL A . n A 1 131 GLN 131 404 404 GLN GLN A . n A 1 132 ALA 132 405 405 ALA ALA A . n A 1 133 ALA 133 406 406 ALA ALA A . n A 1 134 CYS 134 407 407 CYS CYS A . n A 1 135 MSE 135 408 408 MSE MSE A . n A 1 136 VAL 136 409 409 VAL VAL A . n A 1 137 GLN 137 410 410 GLN GLN A . n A 1 138 TYR 138 411 411 TYR TYR A . n A 1 139 GLN 139 412 412 GLN GLN A . n A 1 140 LYS 140 413 413 LYS ALA A . n A 1 141 CYS 141 414 414 CYS CYS A . n A 1 142 LEU 142 415 415 LEU LEU A . n A 1 143 VAL 143 416 416 VAL VAL A . n A 1 144 ALA 144 417 417 ALA ALA A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 296 ? MET SELENOMETHIONINE 2 A MSE 32 A MSE 305 ? MET SELENOMETHIONINE 3 A MSE 34 A MSE 307 ? MET SELENOMETHIONINE 4 A MSE 57 A MSE 330 ? MET SELENOMETHIONINE 5 A MSE 65 A MSE 338 ? MET SELENOMETHIONINE 6 A MSE 135 A MSE 408 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-18 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 32.0120 _pdbx_refine_tls.origin_y 36.5360 _pdbx_refine_tls.origin_z 11.3520 _pdbx_refine_tls.T[1][1] 0.3211 _pdbx_refine_tls.T[2][2] 0.3020 _pdbx_refine_tls.T[3][3] 0.0870 _pdbx_refine_tls.T[1][2] -0.0185 _pdbx_refine_tls.T[1][3] 0.1146 _pdbx_refine_tls.T[2][3] -0.0946 _pdbx_refine_tls.L[1][1] 14.5348 _pdbx_refine_tls.L[2][2] 4.1423 _pdbx_refine_tls.L[3][3] 4.1592 _pdbx_refine_tls.L[1][2] -2.5729 _pdbx_refine_tls.L[1][3] 2.9767 _pdbx_refine_tls.L[2][3] -1.5259 _pdbx_refine_tls.S[1][1] 0.3498 _pdbx_refine_tls.S[1][2] 0.9209 _pdbx_refine_tls.S[1][3] 0.2079 _pdbx_refine_tls.S[2][1] 0.2345 _pdbx_refine_tls.S[2][2] 0.1052 _pdbx_refine_tls.S[2][3] 0.1194 _pdbx_refine_tls.S[3][1] -0.0761 _pdbx_refine_tls.S[3][2] 0.2860 _pdbx_refine_tls.S[3][3] -0.4550 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 288 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 15 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 417 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 144 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 289 ? ? -116.52 -169.13 2 1 LYS A 290 ? ? -168.48 105.26 3 1 THR A 302 ? ? -63.65 -81.80 4 1 ALA A 319 ? ? -59.77 75.65 5 1 ALA A 325 ? ? -83.35 36.51 6 1 PRO A 353 ? ? -42.15 159.10 7 1 TRP A 355 ? ? -176.84 128.97 8 1 PRO A 371 ? ? -45.45 -16.31 9 1 LEU A 380 ? ? -98.30 -77.56 10 1 ARG A 382 ? ? 75.29 -56.04 11 1 HIS A 395 ? ? 118.76 155.30 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 303 ? CG ? A LYS 30 CG 2 1 Y 1 A LYS 303 ? CD ? A LYS 30 CD 3 1 Y 1 A LYS 303 ? CE ? A LYS 30 CE 4 1 Y 1 A LYS 303 ? NZ ? A LYS 30 NZ 5 1 Y 1 A ARG 323 ? CG ? A ARG 50 CG 6 1 Y 1 A ARG 323 ? CD ? A ARG 50 CD 7 1 Y 1 A ARG 323 ? NE ? A ARG 50 NE 8 1 Y 1 A ARG 323 ? CZ ? A ARG 50 CZ 9 1 Y 1 A ARG 323 ? NH1 ? A ARG 50 NH1 10 1 Y 1 A ARG 323 ? NH2 ? A ARG 50 NH2 11 1 Y 1 A GLU 351 ? CG ? A GLU 78 CG 12 1 Y 1 A GLU 351 ? CD ? A GLU 78 CD 13 1 Y 1 A GLU 351 ? OE1 ? A GLU 78 OE1 14 1 Y 1 A GLU 351 ? OE2 ? A GLU 78 OE2 15 1 Y 1 A ARG 369 ? CG ? A ARG 96 CG 16 1 Y 1 A ARG 369 ? CD ? A ARG 96 CD 17 1 Y 1 A ARG 369 ? NE ? A ARG 96 NE 18 1 Y 1 A ARG 369 ? CZ ? A ARG 96 CZ 19 1 Y 1 A ARG 369 ? NH1 ? A ARG 96 NH1 20 1 Y 1 A ARG 369 ? NH2 ? A ARG 96 NH2 21 1 Y 1 A ARG 382 ? CG ? A ARG 109 CG 22 1 Y 1 A ARG 382 ? CD ? A ARG 109 CD 23 1 Y 1 A ARG 382 ? NE ? A ARG 109 NE 24 1 Y 1 A ARG 382 ? CZ ? A ARG 109 CZ 25 1 Y 1 A ARG 382 ? NH1 ? A ARG 109 NH1 26 1 Y 1 A ARG 382 ? NH2 ? A ARG 109 NH2 27 1 Y 1 A GLN 383 ? CG ? A GLN 110 CG 28 1 Y 1 A GLN 383 ? CD ? A GLN 110 CD 29 1 Y 1 A GLN 383 ? OE1 ? A GLN 110 OE1 30 1 Y 1 A GLN 383 ? NE2 ? A GLN 110 NE2 31 1 Y 1 A LYS 413 ? CG ? A LYS 140 CG 32 1 Y 1 A LYS 413 ? CD ? A LYS 140 CD 33 1 Y 1 A LYS 413 ? CE ? A LYS 140 CE 34 1 Y 1 A LYS 413 ? NZ ? A LYS 140 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 274 ? A GLY 1 2 1 Y 1 A SER 275 ? A SER 2 3 1 Y 1 A SER 276 ? A SER 3 4 1 Y 1 A GLY 277 ? A GLY 4 5 1 Y 1 A SER 278 ? A SER 5 6 1 Y 1 A SER 279 ? A SER 6 7 1 Y 1 A GLY 280 ? A GLY 7 8 1 Y 1 A LEU 281 ? A LEU 8 9 1 Y 1 A ASP 282 ? A ASP 9 10 1 Y 1 A ALA 283 ? A ALA 10 11 1 Y 1 A VAL 284 ? A VAL 11 12 1 Y 1 A SER 285 ? A SER 12 13 1 Y 1 A GLN 286 ? A GLN 13 14 1 Y 1 A ALA 287 ? A ALA 14 15 1 Y 1 A ALA 345 ? A ALA 72 16 1 Y 1 A GLU 346 ? A GLU 73 17 1 Y 1 A ALA 347 ? A ALA 74 18 1 Y 1 A SER 348 ? A SER 75 19 1 Y 1 A THR 349 ? A THR 76 20 1 Y 1 A GLU 350 ? A GLU 77 #