HEADER HYDROLASE 18-SEP-06 2DYU TITLE HELICOBACTER PYLORI FORMAMIDASE AMIF CONTAINS A FINE-TUNED CYSTEINE- TITLE 2 GLUTAMATE-LYSINE CATALYTIC TRIAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMAMIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FORMAMIDE AMIDOHYDROLASE; COMPND 5 EC: 3.5.1.49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: AMIF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS FORMAMIDASE, AMIF, CEK, CATALYTIC TRIAD, HELICOBACTER PYLORI, KEYWDS 2 ALIPHATIC AMIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.C.WANG,C.L.HUNG REVDAT 4 13-MAR-24 2DYU 1 REMARK REVDAT 3 13-JUL-11 2DYU 1 VERSN REVDAT 2 03-JUN-08 2DYU 1 JRNL REMARK VERSN REVDAT 1 13-FEB-07 2DYU 0 JRNL AUTH C.-L.HUNG,J.-H.LIU,W.-C.CHIU,S.-W.HUANG,J.-K.HWANG,W.-C.WANG JRNL TITL CRYSTAL STRUCTURE OF HELICOBACTER PYLORI FORMAMIDASE AMIF JRNL TITL 2 REVEALS A CYSTEINE-GLUTAMATE-LYSINE CATALYTIC TRIAD JRNL REF J.BIOL.CHEM. V. 282 12220 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17307742 JRNL DOI 10.1074/JBC.M609134200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 55500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4016 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5098 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 713 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.552 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5246 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7134 ; 1.037 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 5.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;31.514 ;24.298 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 838 ;13.278 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4074 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2866 ; 0.205 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3568 ; 0.321 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1010 ; 0.191 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.146 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 66 ; 0.189 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3270 ; 0.611 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5144 ; 1.068 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2313 ; 1.257 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1990 ; 2.020 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000026012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-04; 11-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 113; 113 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL12B2; BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800; 0.9791 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 0.15M REMARK 280 POTASSIUM THIOCYANATE, 20% POLYETHYLENE GLYCOL 550 MME, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.60750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.49731 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.09100 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 73.60750 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.49731 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.09100 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 73.60750 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.49731 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.09100 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.99462 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 48.18200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 84.99462 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 48.18200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 84.99462 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 48.18200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 ILE A 11 REMARK 465 GLU A 12 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ILE B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 MET B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 10 REMARK 465 ILE B 11 REMARK 465 GLU B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 349 O HOH B 627 1.80 REMARK 500 SD MET A 170 O HOH A 733 1.96 REMARK 500 O HOH B 619 O HOH B 621 1.98 REMARK 500 O HOH A 493 O HOH A 681 2.05 REMARK 500 O HOH A 388 O HOH A 723 2.08 REMARK 500 OE1 GLU A 232 O HOH A 728 2.09 REMARK 500 O PRO B 136 O HOH B 623 2.10 REMARK 500 N GLY A 13 O HOH A 721 2.10 REMARK 500 SD MET B 170 O HOH B 628 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 166 -116.83 52.98 REMARK 500 TYR A 192 58.15 -146.46 REMARK 500 GLN A 195 -11.89 76.23 REMARK 500 TYR A 223 -0.78 -155.72 REMARK 500 ASN A 225 -0.48 69.03 REMARK 500 TRP A 251 -2.73 73.16 REMARK 500 PRO A 288 109.08 -57.87 REMARK 500 TRP B 137 73.85 -38.55 REMARK 500 CYS B 166 -114.86 50.65 REMARK 500 TYR B 192 71.11 -176.72 REMARK 500 GLN B 195 -20.46 71.78 REMARK 500 TYR B 223 -5.52 -150.77 REMARK 500 VAL B 226 -65.22 -121.79 REMARK 500 HIS B 281 50.89 -142.44 REMARK 500 LYS B 316 -71.02 -96.79 REMARK 500 LYS B 318 -6.18 -143.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DYV RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT 2.0 A RESOLUTION REMARK 900 RELATED ID: 2E2K RELATED DB: PDB REMARK 900 THE MUTANT C166S OF THE SAME PROTEIN REMARK 900 RELATED ID: 2E2L RELATED DB: PDB REMARK 900 THE MUTANT C166S OF THE SAME PROTEIN COMPLEXED WITH LIGANDS DBREF 2DYU A 1 334 UNP O25836 AMIF_HELPY 1 334 DBREF 2DYU B 1 334 UNP O25836 AMIF_HELPY 1 334 SEQRES 1 A 334 MET GLY SER ILE GLY SER MET GLY LYS PRO ILE GLU GLY SEQRES 2 A 334 PHE LEU VAL ALA ALA ILE GLN PHE PRO VAL PRO ILE VAL SEQRES 3 A 334 ASN SER ARG LYS ASP ILE ASP HIS ASN ILE GLU SER ILE SEQRES 4 A 334 ILE ARG THR LEU HIS ALA THR LYS ALA GLY TYR PRO GLY SEQRES 5 A 334 VAL GLU LEU ILE ILE PHE PRO GLU TYR SER THR GLN GLY SEQRES 6 A 334 LEU ASN THR ALA LYS TRP LEU SER GLU GLU PHE LEU LEU SEQRES 7 A 334 ASP VAL PRO GLY LYS GLU THR GLU LEU TYR ALA LYS ALA SEQRES 8 A 334 CYS LYS GLU ALA LYS VAL TYR GLY VAL PHE SER ILE MET SEQRES 9 A 334 GLU ARG ASN PRO ASP SER ASN LYS ASN PRO TYR ASN THR SEQRES 10 A 334 ALA ILE ILE ILE ASP PRO GLN GLY GLU ILE ILE LEU LYS SEQRES 11 A 334 TYR ARG LYS LEU PHE PRO TRP ASN PRO ILE GLU PRO TRP SEQRES 12 A 334 TYR PRO GLY ASP LEU GLY MET PRO VAL CYS GLU GLY PRO SEQRES 13 A 334 GLY GLY SER LYS LEU ALA VAL CYS ILE CYS HIS ASP GLY SEQRES 14 A 334 MET ILE PRO GLU LEU ALA ARG GLU ALA ALA TYR LYS GLY SEQRES 15 A 334 CYS ASN VAL TYR ILE ARG ILE SER GLY TYR SER THR GLN SEQRES 16 A 334 VAL ASN ASP GLN TRP ILE LEU THR ASN ARG SER ASN ALA SEQRES 17 A 334 TRP HIS ASN LEU MET TYR THR VAL SER VAL ASN LEU ALA SEQRES 18 A 334 GLY TYR ASP ASN VAL PHE TYR TYR PHE GLY GLU GLY GLN SEQRES 19 A 334 ILE CYS ASN PHE ASP GLY THR THR LEU VAL GLN GLY HIS SEQRES 20 A 334 ARG ASN PRO TRP GLU ILE VAL THR GLY GLU ILE TYR PRO SEQRES 21 A 334 LYS MET ALA ASP ASN ALA ARG LEU SER TRP GLY LEU GLU SEQRES 22 A 334 ASN ASN ILE TYR ASN LEU GLY HIS ARG GLY TYR VAL ALA SEQRES 23 A 334 LYS PRO GLY GLY GLU HIS ASP ALA GLY LEU THR TYR ILE SEQRES 24 A 334 LYS ASP LEU ALA ALA GLY LYS TYR LYS LEU PRO TRP GLU SEQRES 25 A 334 ASP HIS MET LYS ILE LYS ASP GLY SER ILE TYR GLY TYR SEQRES 26 A 334 PRO THR THR GLY GLY ARG PHE GLY LYS SEQRES 1 B 334 MET GLY SER ILE GLY SER MET GLY LYS PRO ILE GLU GLY SEQRES 2 B 334 PHE LEU VAL ALA ALA ILE GLN PHE PRO VAL PRO ILE VAL SEQRES 3 B 334 ASN SER ARG LYS ASP ILE ASP HIS ASN ILE GLU SER ILE SEQRES 4 B 334 ILE ARG THR LEU HIS ALA THR LYS ALA GLY TYR PRO GLY SEQRES 5 B 334 VAL GLU LEU ILE ILE PHE PRO GLU TYR SER THR GLN GLY SEQRES 6 B 334 LEU ASN THR ALA LYS TRP LEU SER GLU GLU PHE LEU LEU SEQRES 7 B 334 ASP VAL PRO GLY LYS GLU THR GLU LEU TYR ALA LYS ALA SEQRES 8 B 334 CYS LYS GLU ALA LYS VAL TYR GLY VAL PHE SER ILE MET SEQRES 9 B 334 GLU ARG ASN PRO ASP SER ASN LYS ASN PRO TYR ASN THR SEQRES 10 B 334 ALA ILE ILE ILE ASP PRO GLN GLY GLU ILE ILE LEU LYS SEQRES 11 B 334 TYR ARG LYS LEU PHE PRO TRP ASN PRO ILE GLU PRO TRP SEQRES 12 B 334 TYR PRO GLY ASP LEU GLY MET PRO VAL CYS GLU GLY PRO SEQRES 13 B 334 GLY GLY SER LYS LEU ALA VAL CYS ILE CYS HIS ASP GLY SEQRES 14 B 334 MET ILE PRO GLU LEU ALA ARG GLU ALA ALA TYR LYS GLY SEQRES 15 B 334 CYS ASN VAL TYR ILE ARG ILE SER GLY TYR SER THR GLN SEQRES 16 B 334 VAL ASN ASP GLN TRP ILE LEU THR ASN ARG SER ASN ALA SEQRES 17 B 334 TRP HIS ASN LEU MET TYR THR VAL SER VAL ASN LEU ALA SEQRES 18 B 334 GLY TYR ASP ASN VAL PHE TYR TYR PHE GLY GLU GLY GLN SEQRES 19 B 334 ILE CYS ASN PHE ASP GLY THR THR LEU VAL GLN GLY HIS SEQRES 20 B 334 ARG ASN PRO TRP GLU ILE VAL THR GLY GLU ILE TYR PRO SEQRES 21 B 334 LYS MET ALA ASP ASN ALA ARG LEU SER TRP GLY LEU GLU SEQRES 22 B 334 ASN ASN ILE TYR ASN LEU GLY HIS ARG GLY TYR VAL ALA SEQRES 23 B 334 LYS PRO GLY GLY GLU HIS ASP ALA GLY LEU THR TYR ILE SEQRES 24 B 334 LYS ASP LEU ALA ALA GLY LYS TYR LYS LEU PRO TRP GLU SEQRES 25 B 334 ASP HIS MET LYS ILE LYS ASP GLY SER ILE TYR GLY TYR SEQRES 26 B 334 PRO THR THR GLY GLY ARG PHE GLY LYS FORMUL 3 HOH *713(H2 O) HELIX 1 1 SER A 28 TYR A 50 1 23 HELIX 2 2 SER A 73 LEU A 77 5 5 HELIX 3 3 GLY A 82 LYS A 96 1 15 HELIX 4 4 PRO A 156 GLY A 158 5 3 HELIX 5 5 HIS A 167 MET A 170 5 4 HELIX 6 6 ILE A 171 LYS A 181 1 11 HELIX 7 7 VAL A 196 LEU A 212 1 17 HELIX 8 8 TYR A 259 TRP A 270 1 12 HELIX 9 9 ASN A 274 LEU A 279 1 6 HELIX 10 10 LEU A 296 ALA A 304 1 9 HELIX 11 11 TRP A 311 MET A 315 5 5 HELIX 12 12 GLY A 320 GLY A 324 5 5 HELIX 13 13 SER B 28 TYR B 50 1 23 HELIX 14 14 SER B 73 LEU B 77 5 5 HELIX 15 15 GLY B 82 LYS B 96 1 15 HELIX 16 16 PRO B 156 GLY B 158 5 3 HELIX 17 17 HIS B 167 MET B 170 5 4 HELIX 18 18 ILE B 171 LYS B 181 1 11 HELIX 19 19 VAL B 196 LEU B 212 1 17 HELIX 20 20 TYR B 259 TRP B 270 1 12 HELIX 21 21 ASN B 274 LEU B 279 1 6 HELIX 22 22 LEU B 296 ALA B 304 1 9 HELIX 23 23 TRP B 311 MET B 315 5 5 SHEET 1 A 6 ILE A 127 ARG A 132 0 SHEET 2 A 6 TYR A 115 ILE A 121 -1 N ALA A 118 O TYR A 131 SHEET 3 A 6 TYR A 98 GLU A 105 -1 N ILE A 103 O THR A 117 SHEET 4 A 6 VAL A 53 ILE A 57 1 N ILE A 56 O TYR A 98 SHEET 5 A 6 PHE A 14 ILE A 19 1 N ILE A 19 O ILE A 57 SHEET 6 A 6 ILE A 253 ILE A 258 -1 O ILE A 258 N PHE A 14 SHEET 1 B 6 CYS A 153 GLU A 154 0 SHEET 2 B 6 LYS A 160 ILE A 165 -1 O LEU A 161 N CYS A 153 SHEET 3 B 6 VAL A 185 SER A 190 1 O ILE A 187 N ALA A 162 SHEET 4 B 6 TYR A 214 ASN A 219 1 O TYR A 214 N TYR A 186 SHEET 5 B 6 GLU A 232 CYS A 236 -1 O CYS A 236 N THR A 215 SHEET 6 B 6 THR A 242 GLN A 245 -1 O VAL A 244 N ILE A 235 SHEET 1 C 6 ILE B 127 ARG B 132 0 SHEET 2 C 6 TYR B 115 ILE B 121 -1 N ALA B 118 O TYR B 131 SHEET 3 C 6 TYR B 98 GLU B 105 -1 N ILE B 103 O THR B 117 SHEET 4 C 6 VAL B 53 ILE B 57 1 N GLU B 54 O TYR B 98 SHEET 5 C 6 PHE B 14 ILE B 19 1 N ALA B 17 O ILE B 57 SHEET 6 C 6 ILE B 253 ILE B 258 -1 O ILE B 258 N PHE B 14 SHEET 1 D 6 CYS B 153 GLU B 154 0 SHEET 2 D 6 LYS B 160 ILE B 165 -1 O LEU B 161 N CYS B 153 SHEET 3 D 6 VAL B 185 SER B 190 1 O ILE B 187 N ALA B 162 SHEET 4 D 6 TYR B 214 ASN B 219 1 O TYR B 214 N TYR B 186 SHEET 5 D 6 GLU B 232 CYS B 236 -1 O CYS B 236 N THR B 215 SHEET 6 D 6 THR B 242 GLN B 245 -1 O VAL B 244 N ILE B 235 CISPEP 1 VAL A 80 PRO A 81 0 1.91 CISPEP 2 ASN A 138 PRO A 139 0 7.02 CISPEP 3 VAL B 80 PRO B 81 0 0.40 CISPEP 4 ASN B 138 PRO B 139 0 10.78 CRYST1 147.215 147.215 72.273 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006780 0.003914 0.000000 0.00000 SCALE2 0.000000 0.007828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013841 0.00000