data_2DZK # _entry.id 2DZK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DZK pdb_00002dzk 10.2210/pdb2dzk/pdb RCSB RCSB026038 ? ? WWPDB D_1000026038 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmk001007089.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DZK _pdbx_database_status.recvd_initial_deposition_date 2006-09-29 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, C.' 1 'Yoneyama, M.' 2 'Koshiba, S.' 3 'Watanabe, S.' 4 'Harada, T.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, C.' 1 ? primary 'Yoneyama, M.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Watanabe, S.' 4 ? primary 'Harada, T.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'UBX domain-containing protein 2' _entity.formula_weight 11894.212 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBX domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELA PSASVVLLPAGRPATSIVHSSSGDILMID ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGRDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELA PSASVVLLPAGRPATSIVHSSSGDILMID ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmk001007089.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 ASP n 1 10 ARG n 1 11 SER n 1 12 THR n 1 13 ILE n 1 14 ALA n 1 15 ARG n 1 16 ILE n 1 17 GLN n 1 18 PHE n 1 19 ARG n 1 20 LEU n 1 21 PRO n 1 22 ASP n 1 23 GLY n 1 24 SER n 1 25 SER n 1 26 PHE n 1 27 THR n 1 28 ASN n 1 29 GLN n 1 30 PHE n 1 31 PRO n 1 32 SER n 1 33 ASP n 1 34 ALA n 1 35 PRO n 1 36 LEU n 1 37 GLU n 1 38 GLU n 1 39 ALA n 1 40 ARG n 1 41 GLN n 1 42 PHE n 1 43 ALA n 1 44 ALA n 1 45 GLN n 1 46 THR n 1 47 VAL n 1 48 GLY n 1 49 ASN n 1 50 THR n 1 51 TYR n 1 52 GLY n 1 53 ASN n 1 54 PHE n 1 55 SER n 1 56 LEU n 1 57 ALA n 1 58 THR n 1 59 MET n 1 60 PHE n 1 61 PRO n 1 62 ARG n 1 63 ARG n 1 64 GLU n 1 65 PHE n 1 66 THR n 1 67 ARG n 1 68 GLU n 1 69 ASP n 1 70 TYR n 1 71 LYS n 1 72 ARG n 1 73 ARG n 1 74 LEU n 1 75 LEU n 1 76 ASP n 1 77 LEU n 1 78 GLU n 1 79 LEU n 1 80 ALA n 1 81 PRO n 1 82 SER n 1 83 ALA n 1 84 SER n 1 85 VAL n 1 86 VAL n 1 87 LEU n 1 88 LEU n 1 89 PRO n 1 90 ALA n 1 91 GLY n 1 92 ARG n 1 93 PRO n 1 94 ALA n 1 95 THR n 1 96 SER n 1 97 ILE n 1 98 VAL n 1 99 HIS n 1 100 SER n 1 101 SER n 1 102 SER n 1 103 GLY n 1 104 ASP n 1 105 ILE n 1 106 LEU n 1 107 MET n 1 108 ILE n 1 109 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Ubxd2, Ubxdc1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P060227-20 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBXD2_MOUSE _struct_ref.pdbx_db_accession Q8VCH8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVL LPAGRPATSIVHSSSGDI ; _struct_ref.pdbx_align_begin 312 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DZK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 105 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8VCH8 _struct_ref_seq.db_align_beg 312 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 409 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 105 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DZK GLY A 1 ? UNP Q8VCH8 ? ? 'cloning artifact' 1 1 1 2DZK SER A 2 ? UNP Q8VCH8 ? ? 'cloning artifact' 2 2 1 2DZK SER A 3 ? UNP Q8VCH8 ? ? 'cloning artifact' 3 3 1 2DZK GLY A 4 ? UNP Q8VCH8 ? ? 'cloning artifact' 4 4 1 2DZK SER A 5 ? UNP Q8VCH8 ? ? 'cloning artifact' 5 5 1 2DZK SER A 6 ? UNP Q8VCH8 ? ? 'cloning artifact' 6 6 1 2DZK GLY A 7 ? UNP Q8VCH8 ? ? 'cloning artifact' 7 7 1 2DZK LEU A 106 ? UNP Q8VCH8 ? ? 'cloning artifact' 106 8 1 2DZK MET A 107 ? UNP Q8VCH8 ? ? 'cloning artifact' 107 9 1 2DZK ILE A 108 ? UNP Q8VCH8 ? ? 'cloning artifact' 108 10 1 2DZK ASP A 109 ? UNP Q8VCH8 ? ? 'cloning artifact' 109 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.18mM UBX domain U-15N, 13C; 20mM d-Tris-HCl (pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DZK _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DZK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations,target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DZK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9748 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DZK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DZK _struct.title 'Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DZK _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;UBX domain, UBX domain-containing protein 2, ubiquitin-like fold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 35 ? GLY A 48 ? PRO A 35 GLY A 48 1 ? 14 HELX_P HELX_P2 2 LEU A 74 ? GLU A 78 ? LEU A 74 GLU A 78 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 25 ? PHE A 30 ? SER A 25 PHE A 30 A 2 ALA A 14 ? ARG A 19 ? ALA A 14 ARG A 19 A 3 SER A 82 ? LEU A 88 ? SER A 82 LEU A 88 A 4 SER A 55 ? ALA A 57 ? SER A 55 ALA A 57 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 26 ? O PHE A 26 N PHE A 18 ? N PHE A 18 A 2 3 N GLN A 17 ? N GLN A 17 O ALA A 83 ? O ALA A 83 A 3 4 O VAL A 86 ? O VAL A 86 N ALA A 57 ? N ALA A 57 # _database_PDB_matrix.entry_id 2DZK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DZK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 HIS 99 99 99 HIS HIS A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 ILE 105 105 105 ILE ILE A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ASP 109 109 109 ASP ASP A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-03-29 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 49 ? ? -101.27 43.49 2 1 ASN A 53 ? ? -81.72 46.10 3 1 PHE A 54 ? ? -55.93 175.63 4 1 ARG A 62 ? ? 37.26 54.78 5 1 PHE A 65 ? ? -46.27 162.47 6 1 PRO A 81 ? ? -69.80 -91.10 7 1 LEU A 106 ? ? 39.87 40.50 8 2 SER A 32 ? ? -38.66 -26.29 9 2 LEU A 36 ? ? -38.17 -39.71 10 2 ARG A 62 ? ? 34.95 49.44 11 2 PHE A 65 ? ? -48.16 162.29 12 2 ARG A 73 ? ? -48.05 163.22 13 2 PRO A 81 ? ? -69.78 -90.91 14 2 PRO A 93 ? ? -69.80 -172.78 15 3 SER A 24 ? ? -39.95 156.80 16 3 SER A 32 ? ? -38.95 -26.23 17 3 ASN A 49 ? ? -83.88 45.40 18 3 ARG A 62 ? ? 35.95 54.45 19 3 PHE A 65 ? ? -41.05 161.57 20 3 PRO A 81 ? ? -69.74 -90.98 21 3 PRO A 93 ? ? -69.78 98.40 22 3 ALA A 94 ? ? -114.73 76.86 23 3 SER A 101 ? ? -171.25 128.96 24 4 ARG A 8 ? ? -43.44 102.27 25 4 PRO A 21 ? ? -69.72 3.32 26 4 SER A 24 ? ? -41.57 158.58 27 4 ASN A 49 ? ? -98.76 38.56 28 4 ASN A 53 ? ? 33.82 49.34 29 4 ARG A 62 ? ? 33.94 54.90 30 4 PHE A 65 ? ? -45.65 150.73 31 4 ARG A 73 ? ? -45.43 163.17 32 4 PRO A 81 ? ? -69.76 -90.91 33 5 SER A 2 ? ? -124.72 -50.70 34 5 ARG A 8 ? ? -87.84 43.24 35 5 ASP A 9 ? ? -35.03 145.63 36 5 SER A 24 ? ? -44.07 161.54 37 5 SER A 32 ? ? -38.67 -26.61 38 5 ARG A 62 ? ? 36.10 53.26 39 5 PRO A 81 ? ? -69.71 -90.31 40 5 PRO A 93 ? ? -69.70 3.72 41 5 SER A 102 ? ? -174.22 137.32 42 6 SER A 32 ? ? -34.10 -39.70 43 6 ALA A 34 ? ? -34.37 115.92 44 6 ASN A 53 ? ? -89.05 42.08 45 6 THR A 58 ? ? -69.97 -178.07 46 6 ARG A 62 ? ? 34.51 54.89 47 6 ARG A 73 ? ? -49.78 151.78 48 6 PRO A 81 ? ? -69.79 -90.94 49 6 PRO A 93 ? ? -69.74 91.49 50 6 ILE A 108 ? ? -34.10 140.91 51 7 SER A 32 ? ? -38.31 -27.04 52 7 ASN A 49 ? ? -86.28 42.88 53 7 ASN A 53 ? ? -85.61 39.16 54 7 PHE A 54 ? ? -42.68 151.05 55 7 ARG A 62 ? ? 38.43 52.53 56 7 PHE A 65 ? ? -48.07 156.23 57 7 PRO A 81 ? ? -69.75 -91.21 58 7 ILE A 105 ? ? -68.51 -175.64 59 8 SER A 3 ? ? 34.72 41.78 60 8 SER A 32 ? ? -35.93 -36.41 61 8 LEU A 36 ? ? -34.41 -39.59 62 8 ASN A 49 ? ? -94.08 46.26 63 8 ARG A 62 ? ? 37.28 55.07 64 8 PHE A 65 ? ? -45.48 155.96 65 8 PRO A 81 ? ? -69.69 -91.01 66 8 ALA A 94 ? ? -174.16 119.12 67 8 VAL A 98 ? ? -125.70 -57.83 68 8 SER A 102 ? ? -97.68 -62.12 69 9 SER A 32 ? ? -35.58 -35.42 70 9 ASN A 49 ? ? -81.41 46.41 71 9 ASN A 53 ? ? -82.84 44.02 72 9 PHE A 54 ? ? -48.45 171.67 73 9 ARG A 62 ? ? 36.79 52.25 74 9 ARG A 73 ? ? -46.71 150.27 75 9 PRO A 81 ? ? -69.78 -90.94 76 10 ARG A 8 ? ? -109.56 40.63 77 10 SER A 32 ? ? -36.38 -31.65 78 10 ASN A 49 ? ? -85.96 43.73 79 10 ARG A 62 ? ? 34.35 53.45 80 10 PHE A 65 ? ? -45.57 164.99 81 10 PRO A 81 ? ? -69.75 -90.49 82 10 ALA A 90 ? ? -95.34 40.08 83 10 LEU A 106 ? ? -39.25 119.78 84 11 ARG A 10 ? ? -46.17 97.40 85 11 PRO A 21 ? ? -69.79 2.77 86 11 SER A 24 ? ? -40.50 155.91 87 11 SER A 32 ? ? -37.04 -31.91 88 11 ARG A 62 ? ? 32.90 54.97 89 11 PHE A 65 ? ? -49.97 170.20 90 11 PRO A 81 ? ? -69.82 -90.96 91 12 SER A 5 ? ? -35.89 133.82 92 12 SER A 32 ? ? -34.51 -39.31 93 12 ALA A 34 ? ? -34.07 117.48 94 12 ASN A 49 ? ? -103.84 44.02 95 12 ASN A 53 ? ? -79.04 45.86 96 12 PHE A 54 ? ? -52.01 172.34 97 12 ARG A 62 ? ? 38.30 55.02 98 12 PHE A 65 ? ? -45.20 157.90 99 12 PRO A 81 ? ? -69.85 -90.79 100 12 ARG A 92 ? ? 35.71 54.72 101 12 SER A 101 ? ? -95.01 42.46 102 12 SER A 102 ? ? -171.10 148.13 103 13 SER A 32 ? ? -36.73 -29.99 104 13 ALA A 34 ? ? -38.78 125.07 105 13 ASN A 53 ? ? -79.93 46.56 106 13 ARG A 62 ? ? 37.20 54.94 107 13 PHE A 65 ? ? -43.05 155.29 108 13 PRO A 81 ? ? -69.77 -90.80 109 13 ALA A 90 ? ? -117.67 74.05 110 13 ALA A 94 ? ? 39.72 39.18 111 14 PRO A 21 ? ? -69.75 2.07 112 14 SER A 32 ? ? -39.34 -25.72 113 14 ALA A 34 ? ? -38.61 127.04 114 14 ASN A 53 ? ? -114.30 73.42 115 14 PRO A 81 ? ? -69.80 -90.85 116 14 THR A 95 ? ? 34.03 40.75 117 14 HIS A 99 ? ? -171.21 106.11 118 14 ILE A 108 ? ? 26.54 49.76 119 15 SER A 24 ? ? -36.17 152.50 120 15 SER A 32 ? ? -36.28 -30.94 121 15 ARG A 62 ? ? 34.62 54.68 122 15 GLU A 64 ? ? -59.52 104.71 123 15 ARG A 67 ? ? -39.93 -39.65 124 15 ARG A 73 ? ? -47.87 165.29 125 15 LEU A 77 ? ? -94.34 31.31 126 15 PRO A 81 ? ? -69.76 -90.46 127 15 MET A 107 ? ? 37.84 44.56 128 16 SER A 5 ? ? -170.97 116.13 129 16 ARG A 8 ? ? -34.50 125.51 130 16 ASP A 9 ? ? -87.68 42.53 131 16 THR A 12 ? ? -39.95 158.83 132 16 SER A 32 ? ? -37.91 -27.75 133 16 LEU A 36 ? ? -36.32 -38.91 134 16 ASN A 49 ? ? -99.79 40.75 135 16 ASN A 53 ? ? -83.26 44.90 136 16 ARG A 62 ? ? 35.50 52.31 137 16 ARG A 73 ? ? -49.33 151.10 138 16 LEU A 77 ? ? -96.66 35.12 139 16 PRO A 81 ? ? -69.71 -90.79 140 17 ARG A 10 ? ? -61.72 -175.87 141 17 SER A 32 ? ? -38.83 -27.15 142 17 ARG A 62 ? ? 35.52 54.63 143 17 PHE A 65 ? ? -49.57 168.99 144 17 PRO A 81 ? ? -69.76 -90.93 145 18 SER A 6 ? ? -53.70 171.52 146 18 THR A 12 ? ? -42.77 150.26 147 18 SER A 32 ? ? -37.26 -31.09 148 18 ASN A 49 ? ? -89.23 44.70 149 18 ASN A 53 ? ? -84.76 40.99 150 18 PRO A 81 ? ? -69.75 -90.92 151 18 ALA A 90 ? ? -90.53 -63.73 152 18 PRO A 93 ? ? -69.70 -176.89 153 19 SER A 2 ? ? -60.94 91.95 154 19 SER A 3 ? ? -52.54 102.75 155 19 SER A 6 ? ? -173.55 -176.71 156 19 ARG A 10 ? ? -61.63 93.73 157 19 SER A 32 ? ? -37.71 -30.35 158 19 ASN A 49 ? ? -93.49 43.11 159 19 ASN A 53 ? ? -100.30 40.37 160 19 PHE A 54 ? ? -50.06 174.75 161 19 THR A 58 ? ? -68.86 -176.10 162 19 ARG A 62 ? ? 33.74 51.39 163 19 ARG A 67 ? ? -37.47 -39.57 164 19 PRO A 81 ? ? -69.76 -90.91 165 19 PRO A 93 ? ? -69.83 5.02 166 19 HIS A 99 ? ? -48.52 157.18 167 20 SER A 6 ? ? -41.37 151.71 168 20 ASP A 9 ? ? -122.70 -55.84 169 20 SER A 11 ? ? -37.03 126.70 170 20 SER A 32 ? ? -37.67 -27.53 171 20 THR A 50 ? ? -120.31 -61.76 172 20 ASN A 53 ? ? -106.08 48.65 173 20 ARG A 62 ? ? 34.19 46.11 174 20 PRO A 81 ? ? -69.77 -90.77 175 20 SER A 102 ? ? -160.91 115.10 #