HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-SEP-06 2DZK TITLE STRUCTURE OF THE UBX DOMAIN IN MOUSE UBX DOMAIN-CONTAINING PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBX DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBX DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UBXD2, UBXDC1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060227-20; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS UBX DOMAIN, UBX DOMAIN-CONTAINING PROTEIN 2, UBIQUITIN-LIKE FOLD, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ZHAO,M.YONEYAMA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DZK 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DZK 1 VERSN REVDAT 1 29-MAR-07 2DZK 0 JRNL AUTH C.ZHAO,M.YONEYAMA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL STRUCTURE OF THE UBX DOMAIN IN MOUSE UBX DOMAIN-CONTAINING JRNL TITL 2 PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DZK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026038. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM UBX DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9748, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 49 43.49 -101.27 REMARK 500 1 ASN A 53 46.10 -81.72 REMARK 500 1 PHE A 54 175.63 -55.93 REMARK 500 1 ARG A 62 54.78 37.26 REMARK 500 1 PHE A 65 162.47 -46.27 REMARK 500 1 PRO A 81 -91.10 -69.80 REMARK 500 1 LEU A 106 40.50 39.87 REMARK 500 2 SER A 32 -26.29 -38.66 REMARK 500 2 LEU A 36 -39.71 -38.17 REMARK 500 2 ARG A 62 49.44 34.95 REMARK 500 2 PHE A 65 162.29 -48.16 REMARK 500 2 ARG A 73 163.22 -48.05 REMARK 500 2 PRO A 81 -90.91 -69.78 REMARK 500 2 PRO A 93 -172.78 -69.80 REMARK 500 3 SER A 24 156.80 -39.95 REMARK 500 3 SER A 32 -26.23 -38.95 REMARK 500 3 ASN A 49 45.40 -83.88 REMARK 500 3 ARG A 62 54.45 35.95 REMARK 500 3 PHE A 65 161.57 -41.05 REMARK 500 3 PRO A 81 -90.98 -69.74 REMARK 500 3 PRO A 93 98.40 -69.78 REMARK 500 3 ALA A 94 76.86 -114.73 REMARK 500 3 SER A 101 128.96 -171.25 REMARK 500 4 ARG A 8 102.27 -43.44 REMARK 500 4 PRO A 21 3.32 -69.72 REMARK 500 4 SER A 24 158.58 -41.57 REMARK 500 4 ASN A 49 38.56 -98.76 REMARK 500 4 ASN A 53 49.34 33.82 REMARK 500 4 ARG A 62 54.90 33.94 REMARK 500 4 PHE A 65 150.73 -45.65 REMARK 500 4 ARG A 73 163.17 -45.43 REMARK 500 4 PRO A 81 -90.91 -69.76 REMARK 500 5 SER A 2 -50.70 -124.72 REMARK 500 5 ARG A 8 43.24 -87.84 REMARK 500 5 ASP A 9 145.63 -35.03 REMARK 500 5 SER A 24 161.54 -44.07 REMARK 500 5 SER A 32 -26.61 -38.67 REMARK 500 5 ARG A 62 53.26 36.10 REMARK 500 5 PRO A 81 -90.31 -69.71 REMARK 500 5 PRO A 93 3.72 -69.70 REMARK 500 5 SER A 102 137.32 -174.22 REMARK 500 6 SER A 32 -39.70 -34.10 REMARK 500 6 ALA A 34 115.92 -34.37 REMARK 500 6 ASN A 53 42.08 -89.05 REMARK 500 6 THR A 58 -178.07 -69.97 REMARK 500 6 ARG A 62 54.89 34.51 REMARK 500 6 ARG A 73 151.78 -49.78 REMARK 500 6 PRO A 81 -90.94 -69.79 REMARK 500 6 PRO A 93 91.49 -69.74 REMARK 500 6 ILE A 108 140.91 -34.10 REMARK 500 REMARK 500 THIS ENTRY HAS 175 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMK001007089.1 RELATED DB: TARGETDB DBREF 2DZK A 8 105 UNP Q8VCH8 UBXD2_MOUSE 312 409 SEQADV 2DZK GLY A 1 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK SER A 2 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK SER A 3 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK GLY A 4 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK SER A 5 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK SER A 6 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK GLY A 7 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK LEU A 106 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK MET A 107 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK ILE A 108 UNP Q8VCH8 CLONING ARTIFACT SEQADV 2DZK ASP A 109 UNP Q8VCH8 CLONING ARTIFACT SEQRES 1 A 109 GLY SER SER GLY SER SER GLY ARG ASP ARG SER THR ILE SEQRES 2 A 109 ALA ARG ILE GLN PHE ARG LEU PRO ASP GLY SER SER PHE SEQRES 3 A 109 THR ASN GLN PHE PRO SER ASP ALA PRO LEU GLU GLU ALA SEQRES 4 A 109 ARG GLN PHE ALA ALA GLN THR VAL GLY ASN THR TYR GLY SEQRES 5 A 109 ASN PHE SER LEU ALA THR MET PHE PRO ARG ARG GLU PHE SEQRES 6 A 109 THR ARG GLU ASP TYR LYS ARG ARG LEU LEU ASP LEU GLU SEQRES 7 A 109 LEU ALA PRO SER ALA SER VAL VAL LEU LEU PRO ALA GLY SEQRES 8 A 109 ARG PRO ALA THR SER ILE VAL HIS SER SER SER GLY ASP SEQRES 9 A 109 ILE LEU MET ILE ASP HELIX 1 1 PRO A 35 GLY A 48 1 14 HELIX 2 2 LEU A 74 GLU A 78 5 5 SHEET 1 A 4 SER A 25 PHE A 30 0 SHEET 2 A 4 ALA A 14 ARG A 19 -1 N PHE A 18 O PHE A 26 SHEET 3 A 4 SER A 82 LEU A 88 1 O ALA A 83 N GLN A 17 SHEET 4 A 4 SER A 55 ALA A 57 -1 N ALA A 57 O VAL A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1