HEADER PROTEIN BINDING 29-SEP-06 2DZN TITLE CRYSTAL STRUCTURE ANALYSIS OF YEAST NAS6P COMPLEXED WITH THE TITLE 2 PROTEASOME SUBUNIT, RPT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 26S PROTEASOME REGULATORY SUBUNIT P28; COMPND 3 CHAIN: A, C, E; COMPND 4 SYNONYM: NAS6P, PROTEASOME NON-ATPASE SUBUNIT 6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG; COMPND 8 CHAIN: B, D, F; COMPND 9 FRAGMENT: C-TERMINAL DOMAIN; COMPND 10 SYNONYM: RPT3, PROTEIN YNT1, TAT-BINDING HOMOLOG 2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETDUET1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PETDUET1 KEYWDS ANKYRIN REPEATS, A-HELICAL DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 4 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.YOKOYAMA,B.PADMANABHAN,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 03-APR-24 2DZN 1 REMARK REVDAT 3 13-MAR-24 2DZN 1 SEQADV REVDAT 2 24-FEB-09 2DZN 1 VERSN REVDAT 1 17-JUL-07 2DZN 0 JRNL AUTH Y.NAKAMURA,T.UMEHARA,A.TANAKA,M.HORIKOSHI,B.PADMANABHAN, JRNL AUTH 2 S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION BETWEEN THE REGULATORY JRNL TITL 2 PARTICLES NAS6 AND RPT3 OF THE YEAST 26S PROTEASOME JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 359 503 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17555716 JRNL DOI 10.1016/J.BBRC.2007.05.138 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 42627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4296 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 321 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.20300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: GANKYRIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6K, MES, PH 6.50, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.11000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 347 REMARK 465 GLU B 348 REMARK 465 ARG B 349 REMARK 465 ARG B 350 REMARK 465 LEU B 351 REMARK 465 ILE B 352 REMARK 465 PHE B 353 REMARK 465 GLY B 354 REMARK 465 THR B 355 REMARK 465 ILE B 356 REMARK 465 ALA B 357 REMARK 465 SER B 358 REMARK 465 LYS B 359 REMARK 465 THR B 417 REMARK 465 ASP B 418 REMARK 465 ASN B 419 REMARK 465 THR B 420 REMARK 465 VAL B 421 REMARK 465 ASP B 422 REMARK 465 LYS B 423 REMARK 465 PHE B 424 REMARK 465 ASP B 425 REMARK 465 PHE B 426 REMARK 465 TYR B 427 REMARK 465 LYS B 428 REMARK 465 MET C 1 REMARK 465 MET D 347 REMARK 465 VAL D 415 REMARK 465 LYS D 416 REMARK 465 THR D 417 REMARK 465 ASP D 418 REMARK 465 ASN D 419 REMARK 465 THR D 420 REMARK 465 VAL D 421 REMARK 465 ASP D 422 REMARK 465 LYS D 423 REMARK 465 PHE D 424 REMARK 465 ASP D 425 REMARK 465 PHE D 426 REMARK 465 TYR D 427 REMARK 465 LYS D 428 REMARK 465 MET E 1 REMARK 465 MET F 347 REMARK 465 THR F 417 REMARK 465 ASP F 418 REMARK 465 ASN F 419 REMARK 465 THR F 420 REMARK 465 VAL F 421 REMARK 465 ASP F 422 REMARK 465 LYS F 423 REMARK 465 PHE F 424 REMARK 465 ASP F 425 REMARK 465 PHE F 426 REMARK 465 TYR F 427 REMARK 465 LYS F 428 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG F 349 OG SER F 377 1.66 REMARK 500 OE1 GLU A 121 O HOH A 344 2.06 REMARK 500 NH1 ARG C 146 O HOH C 356 2.17 REMARK 500 OE2 GLU E 121 O HOH E 328 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 134 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 ASP D 376 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 14 73.85 -102.98 REMARK 500 SER A 27 3.13 -69.86 REMARK 500 GLN A 219 -48.26 -156.93 REMARK 500 SER B 370 -35.77 -143.18 REMARK 500 ASP B 376 143.42 -29.88 REMARK 500 SER B 377 52.37 103.61 REMARK 500 GLN B 414 -20.73 -149.05 REMARK 500 VAL B 415 -74.46 -81.32 REMARK 500 GLU C 12 38.24 -85.75 REMARK 500 ASN C 13 73.15 21.92 REMARK 500 LYS C 17 -41.43 124.19 REMARK 500 HIS C 49 -32.63 -35.04 REMARK 500 LEU D 351 -71.17 -12.27 REMARK 500 ARG D 374 -82.61 -62.51 REMARK 500 SER D 377 83.71 84.90 REMARK 500 ASN E 3 -47.43 64.39 REMARK 500 ASN E 13 21.41 48.73 REMARK 500 PRO E 26 9.06 -67.88 REMARK 500 GLN E 34 3.18 -68.60 REMARK 500 GLN E 47 64.23 31.79 REMARK 500 ALA E 48 73.93 -100.11 REMARK 500 ASN E 61 62.53 -116.81 REMARK 500 ASP E 70 -27.11 -38.64 REMARK 500 HIS E 186 78.38 -101.90 REMARK 500 ARG F 349 -39.14 64.90 REMARK 500 ASP F 367 76.28 -102.63 REMARK 500 ARG F 374 -88.72 -46.75 REMARK 500 SER F 379 160.32 22.37 REMARK 500 ARG F 396 31.54 -76.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DZO RELATED DB: PDB REMARK 900 RELATED ID: AR_001000295.2 RELATED DB: TARGETDB DBREF 2DZN A 1 228 UNP P50086 PSDA_YEAST 1 228 DBREF 2DZN C 1 228 UNP P50086 PSDA_YEAST 1 228 DBREF 2DZN E 1 228 UNP P50086 PSDA_YEAST 1 228 DBREF 2DZN B 348 428 UNP P33298 PRS6B_YEAST 348 428 DBREF 2DZN D 348 428 UNP P33298 PRS6B_YEAST 348 428 DBREF 2DZN F 348 428 UNP P33298 PRS6B_YEAST 348 428 SEQADV 2DZN MET B 347 UNP P33298 INITIATING METHIONINE SEQADV 2DZN MET D 347 UNP P33298 INITIATING METHIONINE SEQADV 2DZN MET F 347 UNP P33298 INITIATING METHIONINE SEQRES 1 A 228 MET SER ASN TYR PRO LEU HIS GLN ALA CYS MET GLU ASN SEQRES 2 A 228 GLU PHE PHE LYS VAL GLN GLU LEU LEU HIS SER LYS PRO SEQRES 3 A 228 SER LEU LEU LEU GLN LYS ASP GLN ASP GLY ARG ILE PRO SEQRES 4 A 228 LEU HIS TRP SER VAL SER PHE GLN ALA HIS GLU ILE THR SEQRES 5 A 228 SER PHE LEU LEU SER LYS MET GLU ASN VAL ASN LEU ASP SEQRES 6 A 228 ASP TYR PRO ASP ASP SER GLY TRP THR PRO PHE HIS ILE SEQRES 7 A 228 ALA CYS SER VAL GLY ASN LEU GLU VAL VAL LYS SER LEU SEQRES 8 A 228 TYR ASP ARG PRO LEU LYS PRO ASP LEU ASN LYS ILE THR SEQRES 9 A 228 ASN GLN GLY VAL THR CYS LEU HIS LEU ALA VAL GLY LYS SEQRES 10 A 228 LYS TRP PHE GLU VAL SER GLN PHE LEU ILE GLU ASN GLY SEQRES 11 A 228 ALA SER VAL ARG ILE LYS ASP LYS PHE ASN GLN ILE PRO SEQRES 12 A 228 LEU HIS ARG ALA ALA SER VAL GLY SER LEU LYS LEU ILE SEQRES 13 A 228 GLU LEU LEU CYS GLY LEU GLY LYS SER ALA VAL ASN TRP SEQRES 14 A 228 GLN ASP LYS GLN GLY TRP THR PRO LEU PHE HIS ALA LEU SEQRES 15 A 228 ALA GLU GLY HIS GLY ASP ALA ALA VAL LEU LEU VAL GLU SEQRES 16 A 228 LYS TYR GLY ALA GLU TYR ASP LEU VAL ASP ASN LYS GLY SEQRES 17 A 228 ALA LYS ALA GLU ASP VAL ALA LEU ASN GLU GLN VAL LYS SEQRES 18 A 228 LYS PHE PHE LEU ASN ASN VAL SEQRES 1 B 82 MET GLU ARG ARG LEU ILE PHE GLY THR ILE ALA SER LYS SEQRES 2 B 82 MET SER LEU ALA PRO GLU ALA ASP LEU ASP SER LEU ILE SEQRES 3 B 82 ILE ARG ASN ASP SER LEU SER GLY ALA VAL ILE ALA ALA SEQRES 4 B 82 ILE MET GLN GLU ALA GLY LEU ARG ALA VAL ARG LYS ASN SEQRES 5 B 82 ARG TYR VAL ILE LEU GLN SER ASP LEU GLU GLU ALA TYR SEQRES 6 B 82 ALA THR GLN VAL LYS THR ASP ASN THR VAL ASP LYS PHE SEQRES 7 B 82 ASP PHE TYR LYS SEQRES 1 C 228 MET SER ASN TYR PRO LEU HIS GLN ALA CYS MET GLU ASN SEQRES 2 C 228 GLU PHE PHE LYS VAL GLN GLU LEU LEU HIS SER LYS PRO SEQRES 3 C 228 SER LEU LEU LEU GLN LYS ASP GLN ASP GLY ARG ILE PRO SEQRES 4 C 228 LEU HIS TRP SER VAL SER PHE GLN ALA HIS GLU ILE THR SEQRES 5 C 228 SER PHE LEU LEU SER LYS MET GLU ASN VAL ASN LEU ASP SEQRES 6 C 228 ASP TYR PRO ASP ASP SER GLY TRP THR PRO PHE HIS ILE SEQRES 7 C 228 ALA CYS SER VAL GLY ASN LEU GLU VAL VAL LYS SER LEU SEQRES 8 C 228 TYR ASP ARG PRO LEU LYS PRO ASP LEU ASN LYS ILE THR SEQRES 9 C 228 ASN GLN GLY VAL THR CYS LEU HIS LEU ALA VAL GLY LYS SEQRES 10 C 228 LYS TRP PHE GLU VAL SER GLN PHE LEU ILE GLU ASN GLY SEQRES 11 C 228 ALA SER VAL ARG ILE LYS ASP LYS PHE ASN GLN ILE PRO SEQRES 12 C 228 LEU HIS ARG ALA ALA SER VAL GLY SER LEU LYS LEU ILE SEQRES 13 C 228 GLU LEU LEU CYS GLY LEU GLY LYS SER ALA VAL ASN TRP SEQRES 14 C 228 GLN ASP LYS GLN GLY TRP THR PRO LEU PHE HIS ALA LEU SEQRES 15 C 228 ALA GLU GLY HIS GLY ASP ALA ALA VAL LEU LEU VAL GLU SEQRES 16 C 228 LYS TYR GLY ALA GLU TYR ASP LEU VAL ASP ASN LYS GLY SEQRES 17 C 228 ALA LYS ALA GLU ASP VAL ALA LEU ASN GLU GLN VAL LYS SEQRES 18 C 228 LYS PHE PHE LEU ASN ASN VAL SEQRES 1 D 82 MET GLU ARG ARG LEU ILE PHE GLY THR ILE ALA SER LYS SEQRES 2 D 82 MET SER LEU ALA PRO GLU ALA ASP LEU ASP SER LEU ILE SEQRES 3 D 82 ILE ARG ASN ASP SER LEU SER GLY ALA VAL ILE ALA ALA SEQRES 4 D 82 ILE MET GLN GLU ALA GLY LEU ARG ALA VAL ARG LYS ASN SEQRES 5 D 82 ARG TYR VAL ILE LEU GLN SER ASP LEU GLU GLU ALA TYR SEQRES 6 D 82 ALA THR GLN VAL LYS THR ASP ASN THR VAL ASP LYS PHE SEQRES 7 D 82 ASP PHE TYR LYS SEQRES 1 E 228 MET SER ASN TYR PRO LEU HIS GLN ALA CYS MET GLU ASN SEQRES 2 E 228 GLU PHE PHE LYS VAL GLN GLU LEU LEU HIS SER LYS PRO SEQRES 3 E 228 SER LEU LEU LEU GLN LYS ASP GLN ASP GLY ARG ILE PRO SEQRES 4 E 228 LEU HIS TRP SER VAL SER PHE GLN ALA HIS GLU ILE THR SEQRES 5 E 228 SER PHE LEU LEU SER LYS MET GLU ASN VAL ASN LEU ASP SEQRES 6 E 228 ASP TYR PRO ASP ASP SER GLY TRP THR PRO PHE HIS ILE SEQRES 7 E 228 ALA CYS SER VAL GLY ASN LEU GLU VAL VAL LYS SER LEU SEQRES 8 E 228 TYR ASP ARG PRO LEU LYS PRO ASP LEU ASN LYS ILE THR SEQRES 9 E 228 ASN GLN GLY VAL THR CYS LEU HIS LEU ALA VAL GLY LYS SEQRES 10 E 228 LYS TRP PHE GLU VAL SER GLN PHE LEU ILE GLU ASN GLY SEQRES 11 E 228 ALA SER VAL ARG ILE LYS ASP LYS PHE ASN GLN ILE PRO SEQRES 12 E 228 LEU HIS ARG ALA ALA SER VAL GLY SER LEU LYS LEU ILE SEQRES 13 E 228 GLU LEU LEU CYS GLY LEU GLY LYS SER ALA VAL ASN TRP SEQRES 14 E 228 GLN ASP LYS GLN GLY TRP THR PRO LEU PHE HIS ALA LEU SEQRES 15 E 228 ALA GLU GLY HIS GLY ASP ALA ALA VAL LEU LEU VAL GLU SEQRES 16 E 228 LYS TYR GLY ALA GLU TYR ASP LEU VAL ASP ASN LYS GLY SEQRES 17 E 228 ALA LYS ALA GLU ASP VAL ALA LEU ASN GLU GLN VAL LYS SEQRES 18 E 228 LYS PHE PHE LEU ASN ASN VAL SEQRES 1 F 82 MET GLU ARG ARG LEU ILE PHE GLY THR ILE ALA SER LYS SEQRES 2 F 82 MET SER LEU ALA PRO GLU ALA ASP LEU ASP SER LEU ILE SEQRES 3 F 82 ILE ARG ASN ASP SER LEU SER GLY ALA VAL ILE ALA ALA SEQRES 4 F 82 ILE MET GLN GLU ALA GLY LEU ARG ALA VAL ARG LYS ASN SEQRES 5 F 82 ARG TYR VAL ILE LEU GLN SER ASP LEU GLU GLU ALA TYR SEQRES 6 F 82 ALA THR GLN VAL LYS THR ASP ASN THR VAL ASP LYS PHE SEQRES 7 F 82 ASP PHE TYR LYS FORMUL 7 HOH *472(H2 O) HELIX 1 1 TYR A 4 GLU A 12 1 9 HELIX 2 2 GLU A 14 LYS A 25 1 12 HELIX 3 3 PRO A 26 LEU A 29 5 4 HELIX 4 4 ILE A 38 PHE A 46 1 9 HELIX 5 5 ALA A 48 LYS A 58 1 11 HELIX 6 6 ASN A 63 TYR A 67 5 5 HELIX 7 7 THR A 74 GLY A 83 1 10 HELIX 8 8 ASN A 84 ASP A 93 1 10 HELIX 9 9 THR A 109 LYS A 117 1 9 HELIX 10 10 TRP A 119 ASN A 129 1 11 HELIX 11 11 ILE A 142 VAL A 150 1 9 HELIX 12 12 SER A 152 GLY A 161 1 10 HELIX 13 13 THR A 176 GLU A 184 1 9 HELIX 14 14 HIS A 186 GLY A 198 1 13 HELIX 15 15 LYS A 210 ALA A 215 5 6 HELIX 16 16 GLN A 219 ASN A 226 1 8 HELIX 17 17 SER B 379 LYS B 397 1 19 HELIX 18 18 LEU B 403 THR B 413 1 11 HELIX 19 19 TYR C 4 GLU C 12 1 9 HELIX 20 20 GLU C 14 LYS C 25 1 12 HELIX 21 21 PRO C 26 GLN C 31 5 6 HELIX 22 22 ILE C 38 PHE C 46 1 9 HELIX 23 23 ALA C 48 LYS C 58 1 11 HELIX 24 24 ASN C 63 TYR C 67 5 5 HELIX 25 25 THR C 74 GLY C 83 1 10 HELIX 26 26 ASN C 84 ASP C 93 1 10 HELIX 27 27 THR C 109 LYS C 117 1 9 HELIX 28 28 TRP C 119 ASN C 129 1 11 HELIX 29 29 ILE C 142 GLY C 151 1 10 HELIX 30 30 SER C 152 LYS C 164 1 13 HELIX 31 31 SER C 165 VAL C 167 5 3 HELIX 32 32 THR C 176 GLU C 184 1 9 HELIX 33 33 HIS C 186 LYS C 196 1 11 HELIX 34 34 LYS C 210 ALA C 215 5 6 HELIX 35 35 ASN C 217 ASN C 226 1 10 HELIX 36 36 ARG D 350 MET D 360 1 11 HELIX 37 37 ASP D 367 ILE D 373 1 7 HELIX 38 38 SER D 379 LYS D 397 1 19 HELIX 39 39 LEU D 403 GLN D 414 1 12 HELIX 40 40 TYR E 4 GLU E 12 1 9 HELIX 41 41 GLU E 14 LYS E 25 1 12 HELIX 42 42 ILE E 38 PHE E 46 1 9 HELIX 43 43 ALA E 48 MET E 59 1 12 HELIX 44 44 ASN E 63 TYR E 67 5 5 HELIX 45 45 THR E 74 GLY E 83 1 10 HELIX 46 46 ASN E 84 ASP E 93 1 10 HELIX 47 47 THR E 109 LYS E 117 1 9 HELIX 48 48 TRP E 119 ASN E 129 1 11 HELIX 49 49 ILE E 142 VAL E 150 1 9 HELIX 50 50 SER E 152 GLY E 161 1 10 HELIX 51 51 THR E 176 GLU E 184 1 9 HELIX 52 52 HIS E 186 GLY E 198 1 13 HELIX 53 53 LYS E 210 ALA E 215 5 6 HELIX 54 54 ASN E 217 VAL E 228 1 12 HELIX 55 55 ARG F 349 SER F 358 1 10 HELIX 56 56 LEU F 368 ASN F 375 1 8 HELIX 57 57 SER F 379 ARG F 396 1 18 HELIX 58 58 LEU F 403 LYS F 416 1 14 SHEET 1 A 2 SER B 361 LEU B 362 0 SHEET 2 A 2 VAL B 401 ILE B 402 1 O ILE B 402 N SER B 361 CRYST1 60.376 100.220 72.203 90.00 94.70 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016563 0.000000 0.001362 0.00000 SCALE2 0.000000 0.009978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013897 0.00000