HEADER HYDROLASE 30-SEP-06 2DZZ TITLE CRYSTAL STRUCTURE OF N392V MUTANT OF YEAST BLEOMYCIN HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PROTEINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: Y3, BLEOMYCIN HYDROLASE, BLM HYDROLASE; COMPND 5 EC: 3.4.22.40; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BLEOMYCIN HYDROLASE, THIOL PROTEASE, C1 PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.O'FARRELL,L.JOSHUA-TOR REVDAT 4 10-NOV-21 2DZZ 1 SEQADV REVDAT 3 13-JUL-11 2DZZ 1 VERSN REVDAT 2 24-FEB-09 2DZZ 1 VERSN REVDAT 1 14-AUG-07 2DZZ 0 JRNL AUTH P.A.O'FARRELL,L.JOSHUA-TOR JRNL TITL MUTAGENESIS AND CRYSTALLOGRAPHIC STUDIES OF THE CATALYTIC JRNL TITL 2 RESIDUES OF THE PAPAIN FAMILY PROTEASE BLEOMYCIN HYDROLASE: JRNL TITL 3 NEW INSIGHTS INTO ACTIVE-SITE STRUCTURE JRNL REF BIOCHEM.J. V. 401 421 2007 JRNL REFN ISSN 0264-6021 JRNL PMID 17007609 JRNL DOI 10.1042/BJ20060641 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 241719.540 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 28754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2791 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 145 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3617 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : 1.11000 REMARK 3 B33 (A**2) : -2.22000 REMARK 3 B12 (A**2) : 1.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.130 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.970 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.950 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.960 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.290 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 58.16 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026053. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29770 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-20% PEG 4K, 100MM TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.71700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.71700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.71700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.71700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.71700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.71700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 33500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 104610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 152.48000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 76.24000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 132.05155 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 76.24000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 132.05155 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 44.71700 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 152.48000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 44.71700 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 44.71700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 61 REMARK 465 THR A 62 REMARK 465 PRO A 63 REMARK 465 VAL A 64 REMARK 465 THR A 65 REMARK 465 ASN A 66 REMARK 465 GLN A 67 REMARK 465 LYS A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 21 CD1 CD2 REMARK 480 ARG A 174 NE CZ NH1 NH2 REMARK 480 LYS A 196 CE NZ REMARK 480 GLU A 197 CB CG CD OE1 OE2 REMARK 480 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 480 SER A 203 OG REMARK 480 LYS A 245 CG CD CE NZ REMARK 480 LYS A 309 CE NZ REMARK 480 LYS A 313 CG CD CE NZ REMARK 480 GLU A 380 CB CG CD OE1 OE2 REMARK 480 LYS A 383 CB CG CD CE NZ REMARK 480 LYS A 427 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 379 O THR A 381 2.17 REMARK 500 N PHE A -3 O HOH A 630 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 359 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 95 138.93 -175.60 REMARK 500 ALA A 137 67.23 -152.22 REMARK 500 TYR A 163 93.99 -166.02 REMARK 500 ASP A 165 34.98 -85.82 REMARK 500 ALA A 172 73.31 -156.44 REMARK 500 GLU A 197 -79.41 -82.27 REMARK 500 SER A 203 -39.00 -39.68 REMARK 500 PRO A 227 153.19 -48.95 REMARK 500 LYS A 244 15.59 80.08 REMARK 500 PRO A 275 -5.78 -59.45 REMARK 500 PRO A 275 -5.47 -59.45 REMARK 500 ARG A 287 -17.06 60.94 REMARK 500 ASN A 290 -53.74 -139.29 REMARK 500 PRO A 328 42.04 -107.81 REMARK 500 THR A 381 172.15 -47.61 REMARK 500 SER A 382 -61.83 64.60 REMARK 500 LYS A 383 29.43 89.98 REMARK 500 SER A 393 54.56 -109.36 REMARK 500 PHE A 416 -55.35 -137.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 33 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DZY RELATED DB: PDB REMARK 900 RELATED ID: 2E00 RELATED DB: PDB REMARK 900 RELATED ID: 2E01 RELATED DB: PDB REMARK 900 RELATED ID: 2E02 RELATED DB: PDB REMARK 900 RELATED ID: 2E03 RELATED DB: PDB DBREF 2DZZ A 1 453 UNP Q01532 BLH1_YEAST 1 454 SEQADV 2DZZ PHE A -3 UNP Q01532 EXPRESSION TAG SEQADV 2DZZ GLN A -2 UNP Q01532 EXPRESSION TAG SEQADV 2DZZ GLY A -1 UNP Q01532 EXPRESSION TAG SEQADV 2DZZ ALA A 0 UNP Q01532 EXPRESSION TAG SEQADV 2DZZ VAL A 392 UNP Q01532 ASN 392 ENGINEERED MUTATION SEQADV 2DZZ A UNP Q01532 LYS 454 DELETION SEQRES 1 A 457 PHE GLN GLY ALA MET SER SER SER ILE ASP ILE SER LYS SEQRES 2 A 457 ILE ASN SER TRP ASN LYS GLU PHE GLN SER ASP LEU THR SEQRES 3 A 457 HIS GLN LEU ALA THR THR VAL LEU LYS ASN TYR ASN ALA SEQRES 4 A 457 ASP ASP ALA LEU LEU ASN LYS THR ARG LEU GLN LYS GLN SEQRES 5 A 457 ASP ASN ARG VAL PHE ASN THR VAL VAL SER THR ASP SER SEQRES 6 A 457 THR PRO VAL THR ASN GLN LYS SER SER GLY ARG CYS TRP SEQRES 7 A 457 LEU PHE ALA ALA THR ASN GLN LEU ARG LEU ASN VAL LEU SEQRES 8 A 457 SER GLU LEU ASN LEU LYS GLU PHE GLU LEU SER GLN ALA SEQRES 9 A 457 TYR LEU PHE PHE TYR ASP LYS LEU GLU LYS ALA ASN TYR SEQRES 10 A 457 PHE LEU ASP GLN ILE VAL SER SER ALA ASP GLN ASP ILE SEQRES 11 A 457 ASP SER ARG LEU VAL GLN TYR LEU LEU ALA ALA PRO THR SEQRES 12 A 457 GLU ASP GLY GLY GLN TYR SER MET PHE LEU ASN LEU VAL SEQRES 13 A 457 LYS LYS TYR GLY LEU ILE PRO LYS ASP LEU TYR GLY ASP SEQRES 14 A 457 LEU PRO TYR SER THR THR ALA SER ARG LYS TRP ASN SER SEQRES 15 A 457 LEU LEU THR THR LYS LEU ARG GLU PHE ALA GLU THR LEU SEQRES 16 A 457 ARG THR ALA LEU LYS GLU ARG SER ALA ASP ASP SER ILE SEQRES 17 A 457 ILE VAL THR LEU ARG GLU GLN MET GLN ARG GLU ILE PHE SEQRES 18 A 457 ARG LEU MET SER LEU PHE MET ASP ILE PRO PRO VAL GLN SEQRES 19 A 457 PRO ASN GLU GLN PHE THR TRP GLU TYR VAL ASP LYS ASP SEQRES 20 A 457 LYS LYS ILE HIS THR ILE LYS SER THR PRO LEU GLU PHE SEQRES 21 A 457 ALA SER LYS TYR ALA LYS LEU ASP PRO SER THR PRO VAL SEQRES 22 A 457 SER LEU ILE ASN ASP PRO ARG HIS PRO TYR GLY LYS LEU SEQRES 23 A 457 ILE LYS ILE ASP ARG LEU GLY ASN VAL LEU GLY GLY ASP SEQRES 24 A 457 ALA VAL ILE TYR LEU ASN VAL ASP ASN GLU THR LEU SER SEQRES 25 A 457 LYS LEU VAL VAL LYS ARG LEU GLN ASN ASN LYS ALA VAL SEQRES 26 A 457 PHE PHE GLY SER HIS THR PRO LYS PHE MET ASP LYS LYS SEQRES 27 A 457 THR GLY VAL MET ASP ILE GLU LEU TRP ASN TYR PRO ALA SEQRES 28 A 457 ILE GLY TYR ASN LEU PRO GLN GLN LYS ALA SER ARG ILE SEQRES 29 A 457 ARG TYR HIS GLU SER LEU MET THR HIS ALA MET LEU ILE SEQRES 30 A 457 THR GLY CYS HIS VAL ASP GLU THR SER LYS LEU PRO LEU SEQRES 31 A 457 ARG TYR ARG VAL GLU VAL SER TRP GLY LYS ASP SER GLY SEQRES 32 A 457 LYS ASP GLY LEU TYR VAL MET THR GLN LYS TYR PHE GLU SEQRES 33 A 457 GLU TYR CYS PHE GLN ILE VAL VAL ASP ILE ASN GLU LEU SEQRES 34 A 457 PRO LYS GLU LEU ALA SER LYS PHE THR SER GLY LYS GLU SEQRES 35 A 457 GLU PRO ILE VAL LEU PRO ILE TRP ASP PRO MET GLY ALA SEQRES 36 A 457 LEU ALA FORMUL 2 HOH *258(H2 O) HELIX 1 1 PHE A -3 SER A 3 1 7 HELIX 2 2 ASP A 6 SER A 19 1 14 HELIX 3 3 ASP A 20 TYR A 33 1 14 HELIX 4 4 ASN A 34 LEU A 40 1 7 HELIX 5 5 ASN A 41 ASP A 49 1 9 HELIX 6 6 ARG A 72 LEU A 90 1 19 HELIX 7 7 SER A 98 SER A 121 1 24 HELIX 8 8 SER A 128 ALA A 137 1 10 HELIX 9 9 GLN A 144 GLY A 156 1 13 HELIX 10 10 PRO A 159 TYR A 163 5 5 HELIX 11 11 PRO A 167 ALA A 172 1 6 HELIX 12 12 SER A 173 ARG A 198 1 26 HELIX 13 13 ASP A 202 MET A 224 1 23 HELIX 14 14 THR A 252 TYR A 260 1 9 HELIX 15 15 ASP A 303 ASN A 317 1 15 HELIX 16 16 ASN A 344 GLY A 349 5 6 HELIX 17 17 GLN A 355 TYR A 362 1 8 HELIX 18 18 GLN A 408 TYR A 414 1 7 HELIX 19 19 ASN A 423 LEU A 425 5 3 HELIX 20 20 PRO A 426 SER A 435 1 10 SHEET 1 A 6 THR A 55 VAL A 56 0 SHEET 2 A 6 HIS A 369 VAL A 378 -1 O CYS A 376 N THR A 55 SHEET 3 A 6 PRO A 385 GLU A 391 -1 O LEU A 386 N HIS A 377 SHEET 4 A 6 LEU A 403 THR A 407 -1 O TYR A 404 N VAL A 390 SHEET 5 A 6 VAL A 337 MET A 338 1 N MET A 338 O VAL A 405 SHEET 6 A 6 MET A 331 ASP A 332 -1 N ASP A 332 O VAL A 337 SHEET 1 B 8 THR A 55 VAL A 56 0 SHEET 2 B 8 HIS A 369 VAL A 378 -1 O CYS A 376 N THR A 55 SHEET 3 B 8 VAL A 321 SER A 325 -1 N VAL A 321 O ILE A 373 SHEET 4 B 8 CYS A 415 ASP A 421 -1 O GLN A 417 N GLY A 324 SHEET 5 B 8 PRO A 268 ILE A 272 -1 N VAL A 269 O VAL A 420 SHEET 6 B 8 VAL A 297 ASN A 301 1 O LEU A 300 N ILE A 272 SHEET 7 B 8 LEU A 282 ILE A 285 -1 N ILE A 283 O TYR A 299 SHEET 8 B 8 ILE A 441 LEU A 443 1 O ILE A 441 N LEU A 282 SHEET 1 C 2 PHE A 235 VAL A 240 0 SHEET 2 C 2 ILE A 246 SER A 251 -1 O SER A 251 N PHE A 235 CISPEP 1 THR A 327 PRO A 328 0 0.24 CRYST1 152.480 152.480 89.434 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006558 0.003786 0.000000 0.00000 SCALE2 0.000000 0.007573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011181 0.00000