HEADER HYDROLASE 27-OCT-06 2E1P TITLE CRYSTAL STRUCTURE OF PRO-TK-SUBTILISIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRO-TK-SUBTILISIN; COMPND 5 EC: 3.4.21.62; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SUBTILISIN, SERINE PROTEASE, PRECURSOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,K.SAITO,H.CHON,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA REVDAT 6 25-OCT-23 2E1P 1 REMARK REVDAT 5 10-NOV-21 2E1P 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2E1P 1 VERSN REVDAT 3 24-FEB-09 2E1P 1 VERSN REVDAT 2 01-MAY-07 2E1P 1 JRNL REVDAT 1 16-JAN-07 2E1P 0 JRNL AUTH S.TANAKA,K.SAITO,H.CHON,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA JRNL TITL CRYSTAL STRUCTURE OF UNAUTOPROCESSED PRECURSOR OF SUBTILISIN JRNL TITL 2 FROM A HYPERTHERMOPHILIC ARCHAEON: EVIDENCE FOR CA2+-INDUCED JRNL TITL 3 FOLDING JRNL REF J.BIOL.CHEM. V. 282 8246 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17237225 JRNL DOI 10.1074/JBC.M610137200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2494673.810 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 18696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 908 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2487 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 118 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.12000 REMARK 3 B22 (A**2) : -10.02000 REMARK 3 B33 (A**2) : 23.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.19 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.810 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.360 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.910 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 37.32 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000026115. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18765 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.09600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.47 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1SCJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0M SODIUM FORMATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.89000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.76500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.34500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.89000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.76500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.34500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.89000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.76500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.34500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.89000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 352 O HOH A 1269 2.17 REMARK 500 O HOH A 1208 O HOH A 1274 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1268 O HOH A 1268 4566 1.02 REMARK 500 O HOH A 1265 O HOH A 1265 3556 1.34 REMARK 500 O HOH A 1276 O HOH A 1276 4566 1.65 REMARK 500 O HOH A 1123 O HOH A 1123 4566 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 81 68.68 -153.72 REMARK 500 SER A 105 33.83 -81.30 REMARK 500 ASP A 115 -154.64 -152.59 REMARK 500 LEU A 125 -37.60 -137.80 REMARK 500 ASN A 166 -137.51 -148.32 REMARK 500 VAL A 170 -161.95 -122.19 REMARK 500 PRO A 175 -8.86 -57.81 REMARK 500 ASP A 212 78.83 -117.51 REMARK 500 ILE A 219 -77.70 -113.35 REMARK 500 SER A 234 49.22 -85.34 REMARK 500 ASP A 314 50.70 72.07 REMARK 500 ASP A 315 48.56 39.44 REMARK 500 SER A 316 -169.99 -123.33 REMARK 500 ILE A 357 30.13 -146.14 REMARK 500 ASP A 381 -64.53 -92.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 84 OE1 REMARK 620 2 ASP A 124 OD1 150.1 REMARK 620 3 ASP A 124 OD2 159.0 50.7 REMARK 620 4 LEU A 164 O 79.3 87.2 105.5 REMARK 620 5 ASN A 166 OD1 79.2 74.2 120.7 90.1 REMARK 620 6 ILE A 168 O 94.4 95.2 82.8 170.8 82.0 REMARK 620 7 VAL A 170 O 82.3 123.1 78.0 84.3 161.4 101.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 GLN A 110 OE1 83.4 REMARK 620 3 ALA A 227 O 157.6 81.4 REMARK 620 4 GLU A 229 OE1 83.1 127.9 93.4 REMARK 620 5 GLU A 229 OE2 75.6 76.3 84.8 51.7 REMARK 620 6 HOH A1007 O 122.5 140.2 79.3 87.9 135.4 REMARK 620 7 HOH A1092 O 81.6 80.4 111.8 145.7 148.9 75.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 205 O REMARK 620 2 ASP A 208 OD1 81.4 REMARK 620 3 ASP A 208 OD2 120.6 41.2 REMARK 620 4 VAL A 210 O 84.6 82.9 98.8 REMARK 620 5 ASP A 226 OD2 94.8 91.7 76.9 174.6 REMARK 620 6 HOH A1267 O 167.1 85.7 46.8 94.3 85.1 REMARK 620 7 HOH A1275 O 93.2 165.7 146.2 83.5 101.9 99.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 OD1 REMARK 620 2 ASP A 214 OD2 71.4 REMARK 620 3 ASP A 216 OD1 82.8 78.7 REMARK 620 4 ILE A 218 O 98.2 160.6 83.9 REMARK 620 5 ASP A 222 OD1 169.8 99.3 91.7 89.7 REMARK 620 6 ASP A 225 OD2 95.2 105.4 174.7 91.5 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD1 REMARK 620 2 ASP A 216 OD2 82.2 REMARK 620 3 ASP A 222 OD1 85.5 77.7 REMARK 620 4 ASP A 222 OD2 119.6 117.4 50.6 REMARK 620 5 ASP A 224 OD2 87.2 159.1 119.5 83.5 REMARK 620 6 HOH A1058 O 160.5 78.9 95.1 74.1 109.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD1 REMARK 620 2 LEU A 373 O 92.8 REMARK 620 3 PRO A 375 O 108.9 98.2 REMARK 620 4 GLY A 377 O 88.9 178.3 81.3 REMARK 620 5 ASP A 379 OD1 150.1 86.4 100.8 92.1 REMARK 620 6 HOH A1023 O 76.4 92.6 167.6 87.8 73.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1006 DBREF 2E1P A 1 398 UNP P58502 TKSU_PYRKO 25 422 SEQADV 2E1P ALA A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQRES 1 A 398 GLY GLU GLN ASN THR ILE ARG VAL ILE VAL SER VAL ASP SEQRES 2 A 398 LYS ALA LYS PHE ASN PRO HIS GLU VAL LEU GLY ILE GLY SEQRES 3 A 398 GLY HIS ILE VAL TYR GLN PHE LYS LEU ILE PRO ALA VAL SEQRES 4 A 398 VAL VAL ASP VAL PRO ALA ASN ALA VAL GLY LYS LEU LYS SEQRES 5 A 398 LYS MET PRO GLY VAL GLU LYS VAL GLU PHE ASP HIS GLN SEQRES 6 A 398 ALA VAL LEU LEU GLY LYS PRO SER TRP LEU GLY GLY GLY SEQRES 7 A 398 SER THR GLN PRO ALA GLN THR ILE PRO TRP GLY ILE GLU SEQRES 8 A 398 ARG VAL LYS ALA PRO SER VAL TRP SER ILE THR ASP GLY SEQRES 9 A 398 SER VAL SER VAL ILE GLN VAL ALA VAL LEU ASP THR GLY SEQRES 10 A 398 VAL ASP TYR ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA SEQRES 11 A 398 TRP CYS VAL SER THR LEU ARG GLY LYS VAL SER THR LYS SEQRES 12 A 398 LEU ARG ASP CYS ALA ASP GLN ASN GLY HIS GLY THR HIS SEQRES 13 A 398 VAL ILE GLY THR ILE ALA ALA LEU ASN ASN ASP ILE GLY SEQRES 14 A 398 VAL VAL GLY VAL ALA PRO GLY VAL GLN ILE TYR SER VAL SEQRES 15 A 398 ARG VAL LEU ASP ALA ARG GLY SER GLY SER TYR SER ASP SEQRES 16 A 398 ILE ALA ILE GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP SEQRES 17 A 398 GLY VAL ALA ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY SEQRES 18 A 398 ASP PRO ASP ASP ASP ALA ALA GLU VAL ILE SER MET SER SEQRES 19 A 398 LEU GLY GLY PRO ALA ASP ASP SER TYR LEU TYR ASP MET SEQRES 20 A 398 ILE ILE GLN ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA SEQRES 21 A 398 ALA SER GLY ASN GLU GLY ALA PRO SER PRO SER TYR PRO SEQRES 22 A 398 ALA ALA TYR PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SEQRES 23 A 398 SER ASN ASP ASN ILE ALA SER PHE SER ASN ARG GLN PRO SEQRES 24 A 398 GLU VAL SER ALA PRO GLY VAL ASP ILE LEU SER THR TYR SEQRES 25 A 398 PRO ASP ASP SER TYR GLU THR LEU MET GLY THR ALA MET SEQRES 26 A 398 ALA THR PRO HIS VAL SER GLY VAL VAL ALA LEU ILE GLN SEQRES 27 A 398 ALA ALA TYR TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL SEQRES 28 A 398 GLY THR PHE ASP ASP ILE SER LYS ASN THR VAL ARG GLY SEQRES 29 A 398 ILE LEU HIS ILE THR ALA ASP ASP LEU GLY PRO THR GLY SEQRES 30 A 398 TRP ASP ALA ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA SEQRES 31 A 398 LEU ALA VAL GLN ALA ALA LEU GLY HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CA A1006 1 HETNAM CA CALCIUM ION FORMUL 2 CA 6(CA 2+) FORMUL 8 HOH *270(H2 O) HELIX 1 1 ASN A 18 ILE A 25 1 8 HELIX 2 2 ALA A 47 LYS A 53 1 7 HELIX 3 3 PRO A 87 VAL A 93 1 7 HELIX 4 4 ALA A 95 ILE A 101 5 7 HELIX 5 5 LEU A 125 ALA A 127 5 3 HELIX 6 6 LEU A 136 LYS A 139 5 4 HELIX 7 7 LYS A 143 ALA A 148 1 6 HELIX 8 8 GLY A 152 ALA A 163 1 12 HELIX 9 9 TYR A 193 GLY A 206 1 14 HELIX 10 10 ASP A 241 ALA A 254 1 14 HELIX 11 11 GLY A 322 TYR A 345 1 24 HELIX 12 12 THR A 361 ALA A 370 1 10 HELIX 13 13 ARG A 388 GLY A 398 1 11 SHEET 1 A 4 HIS A 28 GLN A 32 0 SHEET 2 A 4 ALA A 38 VAL A 43 -1 O VAL A 40 N TYR A 31 SHEET 3 A 4 ILE A 6 VAL A 12 -1 N VAL A 8 O VAL A 41 SHEET 4 A 4 VAL A 57 PHE A 62 -1 O GLU A 61 N ILE A 9 SHEET 1 B 3 SER A 190 SER A 192 0 SHEET 2 B 3 GLN A 65 LEU A 68 -1 N ALA A 66 O GLY A 191 SHEET 3 B 3 LEU A 235 GLY A 236 -1 O GLY A 236 N VAL A 67 SHEET 1 C 3 LYS A 71 PRO A 72 0 SHEET 2 C 3 SER A 316 MET A 321 -1 O MET A 321 N LYS A 71 SHEET 3 C 3 ILE A 308 TYR A 312 -1 N ILE A 308 O LEU A 320 SHEET 1 D 7 ILE A 129 SER A 134 0 SHEET 2 D 7 GLN A 178 ARG A 183 1 O ARG A 183 N VAL A 133 SHEET 3 D 7 GLN A 110 ASP A 115 1 N VAL A 113 O TYR A 180 SHEET 4 D 7 VAL A 230 MET A 233 1 O VAL A 230 N ALA A 112 SHEET 5 D 7 VAL A 257 ALA A 261 1 O VAL A 259 N MET A 233 SHEET 6 D 7 VAL A 279 ILE A 285 1 O ILE A 280 N ALA A 260 SHEET 7 D 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 SSBOND 1 CYS A 132 CYS A 147 1555 1555 2.04 LINK OE1 GLN A 84 CA CA A1001 1555 1555 2.45 LINK O VAL A 108 CA CA A1005 1555 1555 2.32 LINK OE1 GLN A 110 CA CA A1005 1555 1555 2.24 LINK OD1 ASP A 124 CA CA A1001 1555 1555 2.54 LINK OD2 ASP A 124 CA CA A1001 1555 1555 2.58 LINK O LEU A 164 CA CA A1001 1555 1555 2.29 LINK OD1 ASN A 166 CA CA A1001 1555 1555 2.48 LINK O ILE A 168 CA CA A1001 1555 1555 2.32 LINK O VAL A 170 CA CA A1001 1555 1555 2.21 LINK O LEU A 205 CA CA A1002 1555 1555 2.38 LINK OD1 ASP A 208 CA CA A1002 1555 1555 2.41 LINK OD2 ASP A 208 CA CA A1002 1555 1555 3.32 LINK O VAL A 210 CA CA A1002 1555 1555 2.14 LINK OD1 ASP A 212 CA CA A1003 1555 1555 2.44 LINK OD2 ASP A 214 CA CA A1003 1555 1555 2.41 LINK OD1 ASP A 214 CA CA A1004 1555 1555 2.42 LINK OD1 ASP A 216 CA CA A1003 1555 1555 2.41 LINK OD2 ASP A 216 CA CA A1004 1555 1555 2.57 LINK O ILE A 218 CA CA A1003 1555 1555 2.24 LINK OD1 ASP A 222 CA CA A1003 1555 1555 2.26 LINK OD1 ASP A 222 CA CA A1004 1555 1555 2.59 LINK OD2 ASP A 222 CA CA A1004 1555 1555 2.59 LINK OD2 ASP A 224 CA CA A1004 1555 1555 2.41 LINK OD2 ASP A 225 CA CA A1003 1555 1555 2.20 LINK OD2 ASP A 226 CA CA A1002 1555 1555 2.23 LINK O ALA A 227 CA CA A1005 1555 1555 2.26 LINK OE1 GLU A 229 CA CA A1005 1555 1555 2.71 LINK OE2 GLU A 229 CA CA A1005 1555 1555 2.21 LINK OD1 ASP A 372 CA CA A1006 1555 1555 2.17 LINK O LEU A 373 CA CA A1006 1555 1555 2.32 LINK O PRO A 375 CA CA A1006 1555 1555 2.36 LINK O GLY A 377 CA CA A1006 1555 1555 2.30 LINK OD1 ASP A 379 CA CA A1006 1555 1555 2.48 LINK CA CA A1002 O HOH A1267 1555 1555 2.36 LINK CA CA A1002 O HOH A1275 1555 1555 2.32 LINK CA CA A1004 O HOH A1058 1555 1555 2.65 LINK CA CA A1005 O HOH A1007 1555 1555 2.64 LINK CA CA A1005 O HOH A1092 1555 1555 2.38 LINK CA CA A1006 O HOH A1023 1555 1555 2.45 CISPEP 1 TYR A 272 PRO A 273 0 0.12 SITE 1 AC1 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC1 6 ILE A 168 VAL A 170 SITE 1 AC2 6 LEU A 205 ASP A 208 VAL A 210 ASP A 226 SITE 2 AC2 6 HOH A1267 HOH A1275 SITE 1 AC3 6 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC3 6 ASP A 222 ASP A 225 SITE 1 AC4 5 ASP A 214 ASP A 216 ASP A 222 ASP A 224 SITE 2 AC4 5 HOH A1058 SITE 1 AC5 6 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC5 6 HOH A1007 HOH A1092 SITE 1 AC6 6 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC6 6 ASP A 379 HOH A1023 CRYST1 92.690 121.780 77.530 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010789 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012898 0.00000